Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0021847

Physical Location & Seq

Genomic Coordinates Reverse (-)

67500692 .. 67500928

Gene Structure 237 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG466200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGGAGCTCTGCACCGGCGGCGAGCTTTTTGATCGGATTATTGCCAAGGGAAGCTACACCGAGCGTGAAGCGGCCAAGATTTTCCGGCAGATTGTGAATGTGGTGCATGTGTGTCATTTTATGGGAGTGATGCATAGGGATTTGAAGCCTGAGAATTTCTTGCTTGTAAGTAAGGATGAGGATGCACCCATAAAGGCCATTGATTTTGGTCTCTCTGTCTTCATCGAGCAAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0047484 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0080134 GO:0097305 GO:0097306 GO:0098542 GO:0140096 GO:1901000 GO:1901002 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7 Pkinase

Protein Analysis

78

Amino Acids

8.83

Weight (kDa)

5.49

Isoelectric Point (pI)

34.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	1 - 77	8.2e-22	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0021847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17890
rosa_chinensis	RchiOBHm_Chr3g0481601
rosa_multiflora	Rmu_ssc0000188.1_g000001
rosa_samantha	Rh6BG466200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	18, 71
AcoI	YGGCCR	1 cut(s)	72
AcsI	RAATTY	1 cut(s)	154
AgsI	TTSAA	1 cut(s)	145
AluBI	AGCT	3 cut(s)	7, 25, 54
AluI	AGCT	3 cut(s)	7, 25, 54
Alw21I	GWGCWC	1 cut(s)	9
Alw26I	GTCTC	1 cut(s)	215
AoxI	GGCC	2 cut(s)	72, 195
ApoI	RAATTY	1 cut(s)	154
BanII	GRGCYC	1 cut(s)	9
BbsI	GAAGAC	1 cut(s)	211
Bbv12I	GWGCWC	1 cut(s)	9
BcoDI	GTCTC	1 cut(s)	215
BisI	GCNGC	2 cut(s)	19, 72
BlsI	GCNGC	2 cut(s)	20, 73
BmsI	GCATC	2 cut(s)	120, 172
BpiI	GAAGAC	1 cut(s)	211
BsaI	GGTCTC	1 cut(s)	215
BsaJI	CCNNGG	1 cut(s)	45
Bse118I	RCCGGY	1 cut(s)	14
BseDI	CCNNGG	1 cut(s)	45
BseGI	GGATG	2 cut(s)	181, 187
BseMII	CTCAG	1 cut(s)	141
BshFI	GGCC	2 cut(s)	74, 197
BsiHKAI	GWGCWC	1 cut(s)	9
BsiSI	CCGG	2 cut(s)	15, 85
BsmAI	GTCTC	1 cut(s)	215
BsnI	GGCC	2 cut(s)	74, 197
Bso31I	GGTCTC	1 cut(s)	215
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	1 cut(s)	31
BspACI	CCGC	2 cut(s)	18, 71
BspANI	GGCC	2 cut(s)	74, 197
BspCNI	CTCAG	1 cut(s)	142
BspTNI	GGTCTC	1 cut(s)	215
BsrFI	RCCGGY	1 cut(s)	14
BssAI	RCCGGY	1 cut(s)	14
BssECI	CCNNGG	1 cut(s)	45
BssMI	GATC	1 cut(s)	31
BssT1I	CCWWGG	1 cut(s)	45
BstC8I	GCNNGC	1 cut(s)	23
BstDEI	CTNAG	1 cut(s)	150
BstF5I	GGATG	2 cut(s)	181, 187
BstKTI	GATC	1 cut(s)	34
BstMAI	GTCTC	1 cut(s)	215
BstMBI	GATC	1 cut(s)	31
BstMWI	GCNNNNNNNGC	1 cut(s)	18
BstNSI	RCATGY	1 cut(s)	110
BstV2I	GAAGAC	1 cut(s)	211
BsuRI	GGCC	2 cut(s)	74, 197
BtsCI	GGATG	2 cut(s)	181, 187
Cac8I	GCNNGC	1 cut(s)	23
Cfr10I	RCCGGY	1 cut(s)	14
CviAII	CATG	1 cut(s)	107
CviJI	RGCY	6 cut(s)	7, 25, 54, 74, 148, 197
CviKI_1	RGCY	6 cut(s)	7, 25, 54, 74, 148, 197
DdeI	CTNAG	1 cut(s)	150
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
EaeI	YGGCCR	1 cut(s)	72
Ecl136II	GAGCTC	1 cut(s)	7
Eco130I	CCWWGG	1 cut(s)	45
Eco24I	GRGCYC	1 cut(s)	9
Eco31I	GGTCTC	1 cut(s)	215
Eco53kI	GAGCTC	1 cut(s)	7
EcoICRI	GAGCTC	1 cut(s)	7
EcoT14I	CCWWGG	1 cut(s)	45
EcoT22I	ATGCAT	1 cut(s)	135
EcoT38I	GRGCYC	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	1 cut(s)	110
FaiI	YATR	4 cut(s)	108, 122, 135, 191
FatI	CATG	1 cut(s)	106
Fnu4HI	GCNGC	2 cut(s)	19, 72
FokI	GGATG	2 cut(s)	188, 194
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	2 cut(s)	19, 72
GluI	GCNGC	2 cut(s)	19, 72
HaeIII	GGCC	2 cut(s)	74, 197
HapII	CCGG	2 cut(s)	15, 85
Hin1II	CATG	1 cut(s)	110
HpaII	CCGG	2 cut(s)	15, 85
Hpy188I	TCNGA	1 cut(s)	36
HpyCH4V	TGCA	4 cut(s)	12, 106, 133, 185
HpyF10VI	GCNNNNNNNGC	1 cut(s)	18
HpyF3I	CTNAG	1 cut(s)	150
Hsp92II	CATG	1 cut(s)	110
Kzo9I	GATC	1 cut(s)	31
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	3 cut(s)	28, 98, 162
LweI	GCATC	2 cut(s)	120, 172
MalI	GATC	1 cut(s)	33
MboI	GATC	1 cut(s)	31
MboII	GAAGA	1 cut(s)	211
MhlI	GDGCHC	1 cut(s)	9
MluCI	AATT	1 cut(s)	154
MnlI	CCTC	1 cut(s)	172
Mph1103I	ATGCAT	1 cut(s)	135
MspI	CCGG	2 cut(s)	15, 85
MwoI	GCNNNNNNNGC	1 cut(s)	18
NdeII	GATC	1 cut(s)	31
NlaIII	CATG	1 cut(s)	110
NsiI	ATGCAT	1 cut(s)	135
NspI	RCATGY	1 cut(s)	110
PkrI	GCNGC	2 cut(s)	20, 73
Psp124BI	GAGCTC	1 cut(s)	9
SacI	GAGCTC	1 cut(s)	9
SatI	GCNGC	2 cut(s)	19, 72
Sau3AI	GATC	1 cut(s)	31
SduI	GDGCHC	1 cut(s)	9
SetI	ASST	4 cut(s)	9, 27, 56, 235
SfaNI	GCATC	2 cut(s)	120, 172
SgrAI	CRCCGGYG	1 cut(s)	14
Sse9I	AATT	1 cut(s)	154
SsiI	CCGC	2 cut(s)	18, 71
SstI	GAGCTC	1 cut(s)	9
StyI	CCWWGG	1 cut(s)	45
TaqI	TCGA	1 cut(s)	225
TasI	AATT	1 cut(s)	154
TauI	GCSGC	2 cut(s)	21, 74
TspDTI	ATGAA	1 cut(s)	211
XapI	RAATTY	1 cut(s)	154
XceI	RCATGY	1 cut(s)	110
Zsp2I	ATGCAT	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.