Rmu_ssc0000190.1_g000011

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000190.1
OG0023023
Physical Location & Seq
Reverse (-)
37766 .. 38545
780 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 540 bp
atggctgatgccatagctagtctctcgactgctttccaactcttttatttcgcacatataggtctcgaagtggcaatcgcgactgcaattcaagatgattacttctatttggtgggtcagttgcttatacccaaatccaaattcctcagtttcatgggtaccattttgtctatctggaggatcaagatgggactgtttatgagtgaggagggagacaattatatttttcaatttgatcttgagaatgaaaggaatcaaattttgcatggaggtccttggtattgtaagaataatatggttgccttaggagaatatgatggcgtggtagatgccgaggttgtgcctttgtgcctttgggtttcggtgatgaggttagctcttgcgttattaggttgtgacacattcctggccaaggaaagtgaggagctgttgtctcagccactatcggcggcactggccaacctctctctggttgcatccctggctgcaagtcatctcaggggtgcatcttgggcaacttggttggaccgtcgtcattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2 Jacalin

Protein Analysis

179

Amino Acids

19.93

Weight (kDa)

4.83

Isoelectric Point (pI)

37.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 37 - 105 5e-06 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023023)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002829.1_g000014 Rmu_ssc0000190.1_g000011
rosa_rugosa Rorug05G0574500 Rorug07G0108300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 158
AccB1I GGYRCC 1 cut(s) 158
AccII CGCG 1 cut(s) 80
AciI CCGC 1 cut(s) 449
AclWI GGATC 1 cut(s) 188
AcoI YGGCCR 2 cut(s) 408, 456
AcsI RAATTY 2 cut(s) 140, 258
AfaI GTAC 1 cut(s) 160
AfiI CCNNNNNNNGG 2 cut(s) 412, 469
AgsI TTSAA 2 cut(s) 92, 230
AjnI CCWGG 2 cut(s) 405, 480
AjuI GAANNNNNNNTTGG 2 cut(s) 125, 157
AluBI AGCT 3 cut(s) 17, 377, 427
AluI AGCT 3 cut(s) 17, 377, 427
Alw26I GTCTC 4 cut(s) 26, 68, 207, 438
AlwI GGATC 1 cut(s) 188
AoxI GGCC 2 cut(s) 408, 456
ApeKI GCWGC 1 cut(s) 485
ApoI RAATTY 2 cut(s) 140, 258
Asp718I GGTACC 1 cut(s) 158
AspS9I GGNCC 2 cut(s) 272, 526
AsuHPI GGTGA 1 cut(s) 376
AvaII GGWCC 2 cut(s) 272, 526
AxyI CCTNAGG 1 cut(s) 304
BalI TGGCCA 2 cut(s) 410, 458
BanI GGYRCC 1 cut(s) 158
BbvI GCAGC 1 cut(s) 472
BccI CCATC 2 cut(s) 181, 311
BciT130I CCWGG 2 cut(s) 407, 482
BcoDI GTCTC 4 cut(s) 26, 68, 207, 438
BfaI CTAG 1 cut(s) 18
BisI GCNGC 2 cut(s) 450, 486
BlsI GCNGC 2 cut(s) 451, 487
Bme1390I CCNGG 2 cut(s) 407, 482
Bme18I GGWCC 2 cut(s) 272, 526
BmgT120I GGNCC 2 cut(s) 272, 526
BmiI GGNNCC 1 cut(s) 160
BmrFI CCNGG 2 cut(s) 407, 482
BmsI GCATC 3 cut(s) 319, 485, 515
BoxI GACNNNNGTC 1 cut(s) 531
BplI GAGNNNNNCTC 2 cut(s) 361, 393
BpmI CTGGAG 1 cut(s) 196
BpuEI CTTGAG 1 cut(s) 260
BsaI GGTCTC 1 cut(s) 68
BsaJI CCNNGG 4 cut(s) 275, 333, 411, 480
BsaXI ACNNNNNCTCC 2 cut(s) 416, 446
Bsc4I CCNNNNNNNGG 2 cut(s) 412, 469
Bse1I ACTGG 1 cut(s) 459
Bse21I CCTNAGG 1 cut(s) 304
BseBI CCWGG 2 cut(s) 407, 482
BseDI CCNNGG 4 cut(s) 275, 333, 411, 480
BseGI GGATG 1 cut(s) 476
BseLI CCNNNNNNNGG 2 cut(s) 412, 469
BseMII CTCAG 3 cut(s) 160, 449, 511
BseNI ACTGG 1 cut(s) 459
BseRI GAGGAG 2 cut(s) 221, 437
BseXI GCAGC 1 cut(s) 472
Bsh1236I CGCG 1 cut(s) 80
BshFI GGCC 2 cut(s) 410, 458
BshNI GGYRCC 1 cut(s) 158
BslFI GGGAC 1 cut(s) 204
BslI CCNNNNNNNGG 2 cut(s) 412, 469
BsmAI GTCTC 4 cut(s) 26, 68, 207, 438
BsmFI GGGAC 1 cut(s) 204
BsnI GGCC 2 cut(s) 410, 458
Bso31I GGTCTC 1 cut(s) 68
Bsp143I GATC 2 cut(s) 180, 235
Bsp68I TCGCGA 1 cut(s) 80
BspACI CCGC 1 cut(s) 449
BspANI GGCC 2 cut(s) 410, 458
BspCNI CTCAG 3 cut(s) 159, 448, 510
BspFNI CGCG 1 cut(s) 80
BspLI GGNNCC 1 cut(s) 160
BspPI GGATC 1 cut(s) 188
BspT107I GGYRCC 1 cut(s) 158
BspTNI GGTCTC 1 cut(s) 68
BsrI ACTGG 1 cut(s) 459
BssECI CCNNGG 4 cut(s) 275, 333, 411, 480
BssMI GATC 2 cut(s) 180, 235
BssT1I CCWWGG 2 cut(s) 275, 411
Bst2UI CCWGG 2 cut(s) 407, 482
Bst4CI ACNGT 2 cut(s) 195, 530
BstDEI CTNAG 4 cut(s) 146, 304, 435, 497
BstENI CCTNNNNNAGG 1 cut(s) 410
BstF5I GGATG 1 cut(s) 476
BstFNI CGCG 1 cut(s) 80
BstKTI GATC 2 cut(s) 183, 238
BstMAI GTCTC 4 cut(s) 26, 68, 207, 438
BstMBI GATC 2 cut(s) 180, 235
BstMWI GCNNNNNNNGC 3 cut(s) 455, 482, 512
BstNI CCWGG 2 cut(s) 407, 482
BstPAI GACNNNNGTC 1 cut(s) 531
BstSCI CCNGG 2 cut(s) 405, 480
BstUI CGCG 1 cut(s) 80
BstV1I GCAGC 1 cut(s) 472
Bsu36I CCTNAGG 1 cut(s) 304
BsuRI GGCC 2 cut(s) 410, 458
BtsCI GGATG 1 cut(s) 476
BtsIMutI CAGTG 1 cut(s) 452
BtuMI TCGCGA 1 cut(s) 80
Cfr13I GGNCC 2 cut(s) 272, 526
Csp6I GTAC 1 cut(s) 159
CviAII CATG 2 cut(s) 154, 266
CviJI RGCY 8 cut(s) 5, 17, 377, 410, 427, 439, 458, 485
CviKI_1 RGCY 8 cut(s) 5, 17, 377, 410, 427, 439, 458, 485
CviQI GTAC 1 cut(s) 159
DdeI CTNAG 4 cut(s) 146, 304, 435, 497
DpnI GATC 2 cut(s) 182, 237
DpnII GATC 2 cut(s) 180, 235
EaeI YGGCCR 2 cut(s) 408, 456
Eco130I CCWWGG 2 cut(s) 275, 411
Eco31I GGTCTC 1 cut(s) 68
Eco47I GGWCC 2 cut(s) 272, 526
Eco81I CCTNAGG 1 cut(s) 304
EcoNI CCTNNNNNAGG 1 cut(s) 410
EcoO109I RGGNCCY 1 cut(s) 272
EcoRII CCWGG 2 cut(s) 405, 480
EcoT14I CCWWGG 2 cut(s) 275, 411
ErhI CCWWGG 2 cut(s) 275, 411
FaeI CATG 2 cut(s) 157, 269
FaqI GGGAC 1 cut(s) 204
FatI CATG 2 cut(s) 153, 265
Fnu4HI GCNGC 2 cut(s) 450, 486
FokI GGATG 1 cut(s) 463
Fsp4HI GCNGC 2 cut(s) 450, 486
FspBI CTAG 1 cut(s) 18
GluI GCNGC 2 cut(s) 450, 486
GsuI CTGGAG 1 cut(s) 196
HaeIII GGCC 2 cut(s) 410, 458
Hin1II CATG 2 cut(s) 157, 269
HinfI GANTC 1 cut(s) 253
HphI GGTGA 1 cut(s) 376
Hpy188III TCNNGA 7 cut(s) 25, 65, 79, 92, 175, 184, 239
Hpy99I CGWCG 1 cut(s) 534
HpyCH4III ACNGT 2 cut(s) 195, 530
HpyCH4V TGCA 5 cut(s) 86, 265, 476, 488, 506
HpyF10VI GCNNNNNNNGC 3 cut(s) 455, 482, 512
HpyF3I CTNAG 4 cut(s) 146, 304, 435, 497
Hsp92II CATG 2 cut(s) 157, 269
KpnI GGTACC 1 cut(s) 162
Kzo9I GATC 2 cut(s) 180, 235
LmnI GCTCC 1 cut(s) 424
LpnPI CCDG 8 cut(s) 160, 392, 419, 440, 455, 467, 484, 494
Lsp1109I GCAGC 1 cut(s) 472
LweI GCATC 3 cut(s) 319, 485, 515
MaeI CTAG 1 cut(s) 18
MaeIII GTNAC 1 cut(s) 395
MalI GATC 2 cut(s) 182, 237
MboI GATC 2 cut(s) 180, 235
MlsI TGGCCA 2 cut(s) 410, 458
MluCI AATT 5 cut(s) 87, 140, 217, 230, 258
MluNI TGGCCA 2 cut(s) 410, 458
MmeI TCCRAC 2 cut(s) 61, 504
MnlI CCTC 9 cut(s) 155, 171, 199, 202, 263, 328, 363, 415, 473
Mox20I TGGCCA 2 cut(s) 410, 458
MscI TGGCCA 2 cut(s) 410, 458
Msp20I TGGCCA 2 cut(s) 410, 458
MspR9I CCNGG 2 cut(s) 407, 482
MvaI CCWGG 2 cut(s) 407, 482
MvnI CGCG 1 cut(s) 80
MwoI GCNNNNNNNGC 3 cut(s) 455, 482, 512
NdeII GATC 2 cut(s) 180, 235
NlaIII CATG 2 cut(s) 157, 269
NlaIV GGNNCC 1 cut(s) 160
NmeAIII GCCGAG 1 cut(s) 358
NmuCI GTSAC 1 cut(s) 395
NruI TCGCGA 1 cut(s) 80
PfeI GAWTC 1 cut(s) 253
PkrI GCNGC 2 cut(s) 451, 487
PpuMI RGGWCCY 1 cut(s) 272
PshAI GACNNNNGTC 1 cut(s) 531
Psp5II RGGWCCY 1 cut(s) 272
Psp6I CCWGG 2 cut(s) 405, 480
PspGI CCWGG 2 cut(s) 405, 480
PspN4I GGNNCC 1 cut(s) 160
PspPI GGNCC 2 cut(s) 272, 526
PspPPI RGGWCCY 1 cut(s) 272
RruI TCGCGA 1 cut(s) 80
RsaI GTAC 1 cut(s) 160
RsaNI GTAC 1 cut(s) 159
SatI GCNGC 2 cut(s) 450, 486
Sau3AI GATC 2 cut(s) 180, 235
Sau96I GGNCC 2 cut(s) 272, 526
ScrFI CCNGG 2 cut(s) 407, 482
SetI ASST 9 cut(s) 19, 64, 274, 339, 374, 379, 394, 429, 465
SfaNI GCATC 3 cut(s) 319, 485, 515
SinI GGWCC 2 cut(s) 272, 526
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
Sse9I AATT 5 cut(s) 87, 140, 217, 230, 258
SsiI CCGC 1 cut(s) 449
SspMI CTAG 1 cut(s) 18
StyD4I CCNGG 2 cut(s) 405, 480
StyI CCWWGG 2 cut(s) 275, 411
TaaI ACNGT 2 cut(s) 195, 530
TaqI TCGA 2 cut(s) 26, 66
TasI AATT 5 cut(s) 87, 140, 217, 230, 258
TauI GCSGC 1 cut(s) 452
TfiI GAWTC 1 cut(s) 253
TscAI CASTG 1 cut(s) 459
TseFI GTSAC 1 cut(s) 395
TseI GCWGC 1 cut(s) 485
Tsp45I GTSAC 1 cut(s) 395
TspDTI ATGAA 2 cut(s) 142, 261
TspRI CASTG 1 cut(s) 459
VpaK11BI GGWCC 2 cut(s) 272, 526
XagI CCTNNNNNAGG 1 cut(s) 410
XapI RAATTY 2 cut(s) 140, 258
XcmI CCANNNNNNNNNTGG 1 cut(s) 466
XspI CTAG 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.