Rorug07G0108300
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000445
Physical Location & Seq
Forward (+)
8452620 .. 8459083
6464 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0108300.1

Sequence Viewer

Length: 2700 bp
ATGGCACCTACTGTTCCAATAGACTTCACTGGACAGAAACAATCAATGATGGGGAAGTCACGCAAGTATTCAAAAGGGCAGCTATCTGGTTTTGTGCCGGATTATCGTCACGCTGTTGAGACCATGGGGGAATCAGAAGGGTTTGGAAGCTCAGGACGGGTGGACGCAGAAATGACAGCTTCGGAAGATTCGTGTGCGCCTTCTAAAAGGAAATGCATTAGTTTGAATGTTGATGGTTATGATAGTTTTGGGTTGCCTATGCAAGTGCTTCAGCTGTCAAGAATGTCTCGGACTGAAAGGAAGGATTTAGAAGTGAGGCTGAATTTGGAGCTGGAACAGGTCCGGGACCTTCAGAAGAAAATTGCAGCTATGAGTTCAGCTATTGTGTTATCCCCATCTAGTGATATTCGGAGTTGCAGTGATGGGAAAACCAGACCTCCAGTCGAGGCTTACCATAGACCGTCTGAACCAACTGCGCCGCAGGGTAAGAAACGAGCTCCTCCTGGGCGTAATGGTTCACGCAACAAAAAGAGCTTATCTGCGCATGTGGAGTCCGTGAAGCCAGTTGCCGCTTCAAATGCTCAGTTGATGAAACAATGTGAGGGTGTGCTAAATCTGTTGATGAAACATGCATATGCTTGGGTTTTCAAACATCCTGTAGACGTGGTGAAGTTGAATATTCCGGATTATTTTACTGTCATTAAGCATCCAATGGATTTGGGCACTGTGAAGAGCAAGATGACTTCTGGTGGATACTCTAATCCATTAAGTTTTGCTGCTGATGTGCGGCTTACATTCTCAAATGCAATGACTTACAATCCACCTGGAAATGATGTACATATTATGGCTGAGACGCTCAGTAAATATTTTGAACAGAAGTGGAAGGCAATAGAAAAGAAGCTTCCTGTTGATGTGGATCCTTTGCCTTTTAGAGCAGCTCTTCATACGGAAATCATAGAAACTGCTACACCTATGCCACCCTCAAAGAAGAAGAAAACTATACCAAATGATAGTAGCTTCAAGCCAGTCAAGCCTGTCAAGCCAGAAACTCTTAAATGCATCATGACTGAGGAGGAGAAGCATAAACTGACCGAGGAGGTGGATTCGTTGCTGGGAGAATTGCCTGAAAGCATTATTGATTTCTTAAAGGAGCATAGTGGTGAAGGGCAAACCAGTGAGGATGAGATTGAGATTGACTTTGAGGTTCTCAGTGATGATACTTTATTTGCATTGCGGAAGCTTGTTGATGAATATCTGCTGGATAAAGAGAAAAGGCAGGAGAAAAATGAACCTTGTGAAATGGAGATCCTTAATGAGCCGGGATTTAGCAACTCTTCACTGCATCCATGTAAAGGCAATGACATGGTTGATGAGGATGTGGATATTGTTGGTGGAAACGATGCTCCTATATCAAGCTTCCCTCCTGTAGAGATTGAGAAAGATGCAGCTCATAGAAACAGTAAATTCAGTAGCTCAAGTAGCTCCAGTAGTGAATCAGGCTCTTCGTCTAGTGATTCTGACTCTGCTAGTTCTTCAGAAAGTGAATCACGTGTTCCTAAAGCTTCACCTGCATTTGGTGGAGGAAAGGAAAAGTTTGGTTCAGGAGCAAATTCAGATCAAAAGAGAAGTGATCTTGGTGATTCTGAAATTGGCAAGGATCCAATCAATGGGGTTGTCCCAGTTGAGCAGAAATCCCCGTCTAAACCAGTTTCTGTCGAGGAGGGTGAACGACAAGAGGAGGAGAGTGCTCCACCTGAGAGGCAGGTCTCCCCTGAAAAACTCTACCGCGCAGCTGTACTGAGGAATCGGTTTGCAGACACAATATTTAAAGCCAAAGAGAAGGCACTTGAAAAGGGTGATAAGTTGGATCCAGAAAAATTGCGAATTGAGAGAGAGGAACTTGAAAGGCGGCGTAAAGAAGAAAAAGCACGATTGCAAGCCGAGGCCAGAGCTGCAGAAGAGGCTCGGAAAAAGGCTGAAGCAGAAGCTGCAGCTGAAGCTAGAAGGCAAAGGGAACTGGAGAGAGAAGCTGCACGGCAGGCATTGCAAATGATGGAAAAGACGGTCGAAATTAATGAGAACAGTCGATTCATGGAAGATCTAGAAATGTTTAGGGCTGGTGACGAGGATCATTTACCACATTTCATTGAGGAGACCAGCCCGGAGCATTCTCAGAATGAGCTTGGTAGTTTCAAGCTGCAGGGAAGCTGTAATCCCTTGGAGCAACTTGGTTTATTTATGAAGGCGGATGATGATATAGAAATAGAGGAGGAAGAAATTGATCCTCCCAGGAATTTTACAGAACCAGCAAACGAAGTTGACGGGGTCGAGGAGAGACCTTCAAACGATGTTGTGGAAGGACCTTCGAACGAAGTTGAAGAGGTACCTTCAAACGGAGTTGATGTTGAAGAGGGACCTTCAAACGAGGTTGATGTTGAAGAGGGACCTGGGAATGATATTGGAGAGGGACCGGGGAATGACATTGGAGAGGGACCGGGGAATGATATGGGAGAAGGACCTGGGAATGATATGGGGGAGGGGCCTGCTAACGATGTTGAATTACCTGCAAACGAGATTAAAGAGGTTTCTGCAAATGATGTTGAAGAGGGAACAGAAAATCATGTTGAAGAGACAGCAAATCATGTTGATGAGAGAACTGAAAATGAGGTTGAAGATGTCGAAGAAGGAGAGATTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

899

Amino Acids

99.15

Weight (kDa)

4.71

Isoelectric Point (pI)

57.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 200 - 284 2.2e-18 Bromodomain
BET PF17035 355 - 416 4.6e-16 Bromodomain extra-terminal - transcription regulation
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000445)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19110 AT4G19110 AT4G19110 AT5G45430 AT5G45430
fragaria_vesca FvH4_2g16890 FvH4_5g19220 FvH4_5g19340 FvH4_5g19350 FvH4_5g19360 FvH4_5g23910 FvH4_7g27810
malus_domestica MD00G1001400.v1.1 MD04G1058900.v1.1 MD04G1059300.v1.1 MD04G1059500.v1.1 MD04G1059600.v1.1 MD04G1059800.v1.1 MD04G1061700.v1.1 MD04G1061800.v1.1 MD06G1014800.v1.1 MD06G1052900.v1.1 MD06G1055500.v1.1
prunus_persica Prupe.5G021300_v2.0.a1 Prupe.5G065900_v2.0.a1 Prupe.5G066500_v2.0.a1
pyrus_communis pycom06g04440
rosa_chinensis RchiOBHm_Chr1g0374681 RchiOBHm_Chr2g0120471 RchiOBHm_Chr2g0120711 RchiOBHm_Chr7g0203821 RchiOBHm_Chr7g0203861 RchiOBHm_Chr7g0208401 RchiOBHm_Chr7g0209011 RchiOBHm_Chr7g0213341
rosa_laevigata RLG00000001348 RLG00000002813 RLG00000003173 RLG00000003212 RLG00000003503 RLG00000022835 RLG00000026723 RLG00000035532
rosa_multiflora Rmu_co7960007.1_g000001 Rmu_co7963796.1_g000001 Rmu_co8519951.1_g000002 Rmu_sc0002038.1_g000009 Rmu_sc0004947.1_g000015 Rmu_sc0007490.1_g000005 Rmu_sc0011180.1_g000003 Rmu_sc0015273.1_g000013 Rmu_ssc0000190.1_g000014 Rmu_ssc0000372.1_g000031
rosa_roxburghii Rroxscaffold_3G00246080 Rroxscaffold_3G00249860 Rroxscaffold_3G00249870 Rroxscaffold_3G00253500 Rroxscaffold_4G00283340
rosa_rugosa Rorug01G0384300 Rorug07G0079000 Rorug07G0079000 Rorug07G0079000 Rorug07G0108300 Rorug07G0141200
rosa_samantha Rh1AG395700 Rh1BG359900 Rh1DG006600 Rh1DG390900 Rh2AG287100 Rh3BG335800 Rh3CG321100 Rh5DG116800 Rh7AG273000 Rh7BG207600 Rh7BG207800 Rh7BG237700 Rh7BG268400 Rh7CG221100 Rh7CG221300 Rh7CG254000 Rh7CG257900 Rh7CG292200 Rh7DG215700 Rh7DG215900 Rh7DG244500 Rh7DG249800 Rh7DG280700
rosa_wichuraiana Rw0G010370 Rw1G035090 Rw2G023020 Rw7G018200 Rw7G020570 Rw7G023690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1576
Acc16I TGCGCA 1 cut(s) 543
Acc36I ACCTGC 3 cut(s) 1576, 1753, 2572
Acc65I GGTACC 1 cut(s) 2383
AccB1I GGYRCC 2 cut(s) 4, 2383
AccB7I CCANNNNNTGG 1 cut(s) 1667
AccI GTMKAC 1 cut(s) 660
AccII CGCG 1 cut(s) 1788
AccIII TCCGGA 1 cut(s) 682
AciI CCGC 7 cut(s) 479, 570, 787, 1234, 1786, 1909, 2246
AclWI GGATC 9 cut(s) 911, 924, 1300, 1652, 1665, 1862, 1875, 2136, 2276
AcsI RAATTY 4 cut(s) 322, 1463, 1609, 2293
AcuI CTGAAG 5 cut(s) 254, 335, 1518, 1998, 2016
AcvI CACGTG 1 cut(s) 1550
AfaI GTAC 3 cut(s) 837, 1797, 2385
AfiI CCNNNNNNNGG 4 cut(s) 1352, 1574, 1667, 2393
AflIII ACRYGT 1 cut(s) 1549
AhdI GACNNNNNGTC 1 cut(s) 440
AjiI CACGTC 1 cut(s) 664
AjnI CCWGG 5 cut(s) 502, 823, 2288, 2446, 2518
Alw21I GWGCWC 2 cut(s) 499, 1750
Alw26I GTCTC 7 cut(s) 113, 291, 845, 1771, 2147, 2329, 2624
AlwI GGATC 9 cut(s) 911, 924, 1300, 1652, 1665, 1862, 1875, 2136, 2276
AlwNI CAGNNNCTG 2 cut(s) 1712, 1988
Aor13HI TCCGGA 1 cut(s) 682
AoxI GGCC 2 cut(s) 1944, 2540
ApoI RAATTY 4 cut(s) 322, 1463, 1609, 2293
AseI ATTAAT 1 cut(s) 2073
Asp718I GGTACC 1 cut(s) 2383
AspLEI GCGC 4 cut(s) 199, 478, 544, 1790
AspS9I GGNCC 9 cut(s) 340, 346, 2360, 2414, 2444, 2468, 2492, 2516, 2540
AsuC2I CCSGG 5 cut(s) 344, 1320, 2162, 2472, 2496
AsuHPI GGTGA 7 cut(s) 679, 1172, 1557, 1649, 1736, 1868, 2132
AsuII TTCGAA 1 cut(s) 2366
AvaII GGWCC 8 cut(s) 340, 346, 2360, 2414, 2444, 2468, 2492, 2516
BaeGI GKGCMC 1 cut(s) 725
BamHI GGATCC 3 cut(s) 916, 1657, 1867
BanI GGYRCC 2 cut(s) 4, 2383
BanII GRGCYC 1 cut(s) 499
BbrPI CACGTG 1 cut(s) 1550
Bbv12I GWGCWC 2 cut(s) 499, 1750
BccI CCATC 5 cut(s) 43, 227, 403, 416, 2047
BceAI ACGGC 1 cut(s) 2051
BciT130I CCWGG 5 cut(s) 504, 825, 2290, 2448, 2520
BciVI GTATCC 1 cut(s) 746
BcnI CCSGG 5 cut(s) 344, 1320, 2162, 2472, 2496
BcoDI GTCTC 7 cut(s) 113, 291, 845, 1771, 2147, 2329, 2624
BfaI CTAG 5 cut(s) 399, 1509, 1527, 2001, 2102
BfmI CTRYAG 5 cut(s) 657, 1425, 1953, 1989, 2198
BfuAI ACCTGC 3 cut(s) 1576, 1753, 2572
BfuI GTATCC 1 cut(s) 746
BglII AGATCT 1 cut(s) 2098
Bme18I GGWCC 8 cut(s) 340, 346, 2360, 2414, 2444, 2468, 2492, 2516
BmeRI GACNNNNNGTC 1 cut(s) 440
BmgBI CACGTC 1 cut(s) 664
BmgT120I GGNCC 9 cut(s) 340, 346, 2360, 2414, 2444, 2468, 2492, 2516, 2540
BmrI ACTGGG 1 cut(s) 1673
BmsI GCATC 5 cut(s) 715, 1068, 1351, 1390, 1432
BmuI ACTGGG 1 cut(s) 1673
BpmI CTGGAG 3 cut(s) 423, 1468, 2039
Bpu10I CCTNAGC 1 cut(s) 151
Bpu14I TTCGAA 1 cut(s) 2366
BpuEI CTTGAG 1 cut(s) 1459
BpuMI CCSGG 5 cut(s) 344, 1320, 2162, 2472, 2496
BsaAI YACGTR 1 cut(s) 1550
BsaBI GATNNNNATC 2 cut(s) 915, 1251
BsaI GGTCTC 4 cut(s) 113, 1771, 2147, 2329
BsaWI WCCGGW 1 cut(s) 682
BsaXI ACNNNNNCTCC 6 cut(s) 403, 421, 433, 451, 2388, 2418
Bsc4I CCNNNNNNNGG 4 cut(s) 1352, 1574, 1667, 2393
Bse1I ACTGG 9 cut(s) 34, 440, 563, 1025, 1173, 1485, 1679, 1706, 2022
Bse3DI GCAATG 4 cut(s) 813, 1229, 1363, 2042
Bse8I GATNNNNATC 2 cut(s) 915, 1251
BseAI TCCGGA 1 cut(s) 682
BseBI CCWGG 5 cut(s) 504, 825, 2290, 2448, 2520
BseGI GGATG 6 cut(s) 652, 706, 1186, 1342, 1381, 2254
BseJI GATNNNNATC 2 cut(s) 915, 1251
BseLI CCNNNNNNNGG 4 cut(s) 1352, 1574, 1667, 2393
BseMI GCAATG 4 cut(s) 813, 1229, 1363, 2042
BseMII CTCAG 9 cut(s) 165, 596, 840, 871, 1059, 1222, 1746, 1790, 2186
BseNI ACTGG 9 cut(s) 34, 440, 563, 1025, 1173, 1485, 1679, 1706, 2022
BseSI GKGCMC 1 cut(s) 725
BseYI CCCAGC 1 cut(s) 1111
BsgI GTGCAG 1 cut(s) 2016
Bsh1236I CGCG 1 cut(s) 1788
Bsh1285I CGRYCG 1 cut(s) 2067
BshFI GGCC 2 cut(s) 1946, 2542
BshNI GGYRCC 2 cut(s) 4, 2383
BsiEI CGRYCG 1 cut(s) 2067
BsiHKAI GWGCWC 2 cut(s) 499, 1750
BsiSI CCGG 7 cut(s) 98, 343, 683, 1319, 2162, 2471, 2495
BslFI GGGAC 6 cut(s) 359, 1661, 2427, 2457, 2481, 2505
BslI CCNNNNNNNGG 4 cut(s) 1352, 1574, 1667, 2393
BsmAI GTCTC 7 cut(s) 113, 291, 845, 1771, 2147, 2329, 2624
BsmBI CGTCTC 1 cut(s) 845
BsmFI GGGAC 6 cut(s) 359, 1661, 2427, 2457, 2481, 2505
BsmI GAATGC 1 cut(s) 2167
BsnI GGCC 2 cut(s) 1946, 2542
Bso31I GGTCTC 4 cut(s) 113, 1771, 2147, 2329
Bsp119I TTCGAA 1 cut(s) 2366
Bsp1286I GDGCHC 3 cut(s) 499, 725, 1750
Bsp13I TCCGGA 1 cut(s) 682
Bsp1407I TGTACA 1 cut(s) 835
Bsp143I GATC 9 cut(s) 916, 1305, 1615, 1630, 1657, 1867, 2098, 2128, 2281
Bsp19I CCATGG 1 cut(s) 123
BspACI CCGC 7 cut(s) 479, 570, 787, 1234, 1786, 1909, 2246
BspANI GGCC 2 cut(s) 1946, 2542
BspCNI CTCAG 9 cut(s) 164, 595, 841, 870, 1060, 1221, 1747, 1791, 2185
BspEI TCCGGA 1 cut(s) 682
BspFNI CGCG 1 cut(s) 1788
BspHI TCATGA 1 cut(s) 1062
BspMAI CTGCAG 3 cut(s) 1957, 1993, 2202
BspMI ACCTGC 3 cut(s) 1576, 1753, 2572
BspPI GGATC 9 cut(s) 911, 924, 1300, 1652, 1665, 1862, 1875, 2136, 2276
BspQI GCTCTTC 3 cut(s) 725, 945, 1507
BspT104I TTCGAA 1 cut(s) 2366
BspT107I GGYRCC 2 cut(s) 4, 2383
BspTNI GGTCTC 4 cut(s) 113, 1771, 2147, 2329
BsrDI GCAATG 4 cut(s) 813, 1229, 1363, 2042
BsrGI TGTACA 1 cut(s) 835
BsrI ACTGG 9 cut(s) 34, 440, 563, 1025, 1173, 1485, 1679, 1706, 2022
BssMI GATC 9 cut(s) 916, 1305, 1615, 1630, 1657, 1867, 2098, 2128, 2281
BssT1I CCWWGG 2 cut(s) 123, 2217
Bst2UI CCWGG 5 cut(s) 504, 825, 2290, 2448, 2520
Bst4CI ACNGT 7 cut(s) 13, 462, 697, 727, 1460, 2065, 2084
BstAPI GCANNNNNTGC 2 cut(s) 1988, 2044
BstAUI TGTACA 1 cut(s) 835
BstBAI YACGTR 1 cut(s) 1550
BstBI TTCGAA 1 cut(s) 2366
BstC8I GCNNGC 3 cut(s) 1938, 2040, 2544
BstDEI CTNAG 9 cut(s) 151, 582, 849, 857, 1068, 1208, 1755, 1799, 2172
BstDSI CCRYGG 1 cut(s) 123
BstF5I GGATG 6 cut(s) 652, 706, 1186, 1342, 1381, 2254
BstFNI CGCG 1 cut(s) 1788
BstHHI GCGC 4 cut(s) 199, 478, 544, 1790
BstKTI GATC 9 cut(s) 919, 1308, 1618, 1633, 1660, 1870, 2101, 2131, 2284
BstMAI GTCTC 7 cut(s) 113, 291, 845, 1771, 2147, 2329, 2624
BstMBI GATC 9 cut(s) 916, 1305, 1615, 1630, 1657, 1867, 2098, 2128, 2281
BstMCI CGRYCG 1 cut(s) 2067
BstNI CCWGG 5 cut(s) 504, 825, 2290, 2448, 2520
BstNSI RCATGY 2 cut(s) 548, 632
BstSFI CTRYAG 5 cut(s) 657, 1425, 1953, 1989, 2198
BstSLI GKGCMC 1 cut(s) 725
BstUI CGCG 1 cut(s) 1788
BstX2I RGATCY 5 cut(s) 916, 1305, 1657, 1867, 2098
BstYI RGATCY 5 cut(s) 916, 1305, 1657, 1867, 2098
BsuI GTATCC 1 cut(s) 746
BsuRI GGCC 2 cut(s) 1946, 2542
BtgI CCRYGG 1 cut(s) 123
BtrI CACGTC 1 cut(s) 664
BtsCI GGATG 6 cut(s) 652, 706, 1186, 1342, 1381, 2254
BtsI GCAGTG 2 cut(s) 424, 1337
BtsIMutI CAGTG 6 cut(s) 27, 424, 723, 1180, 1216, 1337
BveI ACCTGC 3 cut(s) 1576, 1753, 2572
Cac8I GCNNGC 3 cut(s) 1938, 2040, 2544
CaiI CAGNNNCTG 2 cut(s) 1712, 1988
CciI TCATGA 1 cut(s) 1062
CfoI GCGC 4 cut(s) 199, 478, 544, 1790
Cfr13I GGNCC 9 cut(s) 340, 346, 2360, 2414, 2444, 2468, 2492, 2516, 2540
CseI GACGC 2 cut(s) 173, 862
Csp6I GTAC 3 cut(s) 836, 1796, 2384
CviAII CATG 9 cut(s) 124, 545, 629, 1063, 1347, 1363, 2092, 2621, 2642
CviQI GTAC 3 cut(s) 836, 1796, 2384
DdeI CTNAG 9 cut(s) 151, 582, 849, 857, 1068, 1208, 1755, 1799, 2172
DpnI GATC 9 cut(s) 918, 1307, 1617, 1632, 1659, 1869, 2100, 2130, 2283
DpnII GATC 9 cut(s) 916, 1305, 1615, 1630, 1657, 1867, 2098, 2128, 2281
DraI TTTAAA 1 cut(s) 1828
DriI GACNNNNNGTC 1 cut(s) 440
Eam1105I GACNNNNNGTC 1 cut(s) 440
EciI GGCGGA 1 cut(s) 2261
Ecl136II GAGCTC 1 cut(s) 497
Eco130I CCWWGG 2 cut(s) 123, 2217
Eco24I GRGCYC 1 cut(s) 499
Eco31I GGTCTC 4 cut(s) 113, 1771, 2147, 2329
Eco47I GGWCC 8 cut(s) 340, 346, 2360, 2414, 2444, 2468, 2492, 2516
Eco53kI GAGCTC 1 cut(s) 497
Eco57I CTGAAG 5 cut(s) 254, 335, 1518, 1998, 2016
Eco72I CACGTG 1 cut(s) 1550
EcoICRI GAGCTC 1 cut(s) 497
EcoO109I RGGNCCY 6 cut(s) 346, 2360, 2414, 2444, 2516, 2540
EcoRII CCWGG 5 cut(s) 502, 823, 2288, 2446, 2518
EcoT14I CCWWGG 2 cut(s) 123, 2217
EcoT22I ATGCAT 3 cut(s) 218, 634, 1061
EcoT38I GRGCYC 1 cut(s) 499
ErhI CCWWGG 2 cut(s) 123, 2217
Esp3I CGTCTC 1 cut(s) 845
FaeI CATG 9 cut(s) 127, 548, 632, 1066, 1350, 1366, 2095, 2624, 2645
FaqI GGGAC 6 cut(s) 359, 1661, 2427, 2457, 2481, 2505
FatI CATG 9 cut(s) 123, 544, 628, 1062, 1346, 1362, 2091, 2620, 2641
FauNDI CATATG 1 cut(s) 634
FblI GTMKAC 1 cut(s) 660
FokI GGATG 6 cut(s) 639, 693, 1193, 1329, 1388, 2261
FriOI GRGCYC 1 cut(s) 499
FspBI CTAG 5 cut(s) 399, 1509, 1527, 2001, 2102
FspI TGCGCA 1 cut(s) 543
GlaI GCGC 4 cut(s) 198, 477, 543, 1789
GsaI CCCAGC 1 cut(s) 1115
GsuI CTGGAG 3 cut(s) 423, 1468, 2039
HaeIII GGCC 2 cut(s) 1946, 2542
HapII CCGG 7 cut(s) 98, 343, 683, 1319, 2162, 2471, 2495
HgaI GACGC 2 cut(s) 173, 862
HhaI GCGC 4 cut(s) 199, 478, 544, 1790
Hin1II CATG 9 cut(s) 127, 548, 632, 1066, 1350, 1366, 2095, 2624, 2645
Hin6I GCGC 4 cut(s) 197, 476, 542, 1788
HinP1I GCGC 4 cut(s) 197, 476, 542, 1788
HincII GTYRAC 1 cut(s) 2320
HindII GTYRAC 1 cut(s) 2320
HindIII AAGCTT 4 cut(s) 899, 1238, 1414, 1560
HpaII CCGG 7 cut(s) 98, 343, 683, 1319, 2162, 2471, 2495
HphI GGTGA 7 cut(s) 679, 1172, 1557, 1649, 1736, 1868, 2132
Hpy166II GTNNAC 5 cut(s) 163, 518, 661, 1727, 2320
Hpy188III TCNNGA 7 cut(s) 153, 279, 683, 1063, 1602, 1871, 2102
Hpy8I GTNNAC 5 cut(s) 163, 518, 661, 1727, 2320
HpyCH4III ACNGT 7 cut(s) 13, 462, 697, 727, 1460, 2065, 2084
HpyCH4IV ACGT 2 cut(s) 663, 1549
HpyF3I CTNAG 9 cut(s) 151, 582, 849, 857, 1068, 1208, 1755, 1799, 2172
HpySE526I ACGT 2 cut(s) 663, 1549
Hsp92II CATG 9 cut(s) 127, 548, 632, 1066, 1350, 1366, 2095, 2624, 2645
HspAI GCGC 4 cut(s) 197, 476, 542, 1788
Kpn2I TCCGGA 1 cut(s) 682
KpnI GGTACC 1 cut(s) 2387
Kzo9I GATC 9 cut(s) 916, 1305, 1615, 1630, 1657, 1867, 2098, 2128, 2281
LguI GCTCTTC 3 cut(s) 725, 945, 1507
LmnI GCTCC 9 cut(s) 328, 502, 1150, 1408, 1487, 1604, 1753, 2164, 2221
LweI GCATC 5 cut(s) 715, 1068, 1351, 1390, 1432
MaeI CTAG 5 cut(s) 399, 1509, 1527, 2001, 2102
MaeII ACGT 2 cut(s) 663, 1549
MaeIII GTNAC 3 cut(s) 57, 107, 2120
MalI GATC 9 cut(s) 918, 1307, 1617, 1632, 1659, 1869, 2100, 2130, 2283
MboI GATC 9 cut(s) 916, 1305, 1615, 1630, 1657, 1867, 2098, 2128, 2281
MflI RGATCY 5 cut(s) 916, 1305, 1657, 1867, 2098
MhlI GDGCHC 3 cut(s) 499, 725, 1750
MlyI GAGTC 2 cut(s) 560, 1514
MmeI TCCRAC 1 cut(s) 1845
Mph1103I ATGCAT 3 cut(s) 218, 634, 1061
MroI TCCGGA 1 cut(s) 682
MseI TTAA 8 cut(s) 702, 767, 1053, 1145, 1311, 1827, 2073, 2577
MslI CAYNNNNRTG 3 cut(s) 633, 1158, 2646
MspA1I CMGCKG 3 cut(s) 274, 1793, 1994
MspI CCGG 7 cut(s) 98, 343, 683, 1319, 2162, 2471, 2495
Mva1269I GAATGC 1 cut(s) 2167
MvaI CCWGG 5 cut(s) 504, 825, 2290, 2448, 2520
MvnI CGCG 1 cut(s) 1788
NciI CCSGG 5 cut(s) 344, 1320, 2162, 2472, 2496
NcoI CCATGG 1 cut(s) 123
NdeI CATATG 1 cut(s) 634
NdeII GATC 9 cut(s) 916, 1305, 1615, 1630, 1657, 1867, 2098, 2128, 2281
NlaIII CATG 9 cut(s) 127, 548, 632, 1066, 1350, 1366, 2095, 2624, 2645
NmeAIII GCCGAG 1 cut(s) 1966
NmuCI GTSAC 3 cut(s) 57, 107, 2120
NsbI TGCGCA 1 cut(s) 543
NsiI ATGCAT 3 cut(s) 218, 634, 1061
NspI RCATGY 2 cut(s) 548, 632
NspV TTCGAA 1 cut(s) 2366
PagI TCATGA 1 cut(s) 1062
PaqCI CACCTGC 1 cut(s) 1576
PciSI GCTCTTC 3 cut(s) 725, 945, 1507
PcsI WCGNNNNNNNCGW 1 cut(s) 188
PctI GAATGC 1 cut(s) 2167
PfeI GAWTC 9 cut(s) 131, 188, 1103, 1493, 1514, 1544, 1640, 1804, 2088
PflFI GACNNNGTC 1 cut(s) 2324
PflMI CCANNNNNTGG 1 cut(s) 1667
PfoI TCCNGGA 1 cut(s) 342
PleI GAGTC 2 cut(s) 559, 1514
PmaCI CACGTG 1 cut(s) 1550
PmlI CACGTG 1 cut(s) 1550
PpsI GAGTC 2 cut(s) 559, 1514
Ppu21I YACGTR 1 cut(s) 1550
PpuMI RGGWCCY 5 cut(s) 346, 2360, 2414, 2444, 2516
PshBI ATTAAT 1 cut(s) 2073
Psp124BI GAGCTC 1 cut(s) 499
Psp5II RGGWCCY 5 cut(s) 346, 2360, 2414, 2444, 2516
Psp6I CCWGG 5 cut(s) 502, 823, 2288, 2446, 2518
PspCI CACGTG 1 cut(s) 1550
PspFI CCCAGC 1 cut(s) 1111
PspGI CCWGG 5 cut(s) 502, 823, 2288, 2446, 2518
PspPI GGNCC 9 cut(s) 340, 346, 2360, 2414, 2444, 2468, 2492, 2516, 2540
PspPPI RGGWCCY 5 cut(s) 346, 2360, 2414, 2444, 2516
PstI CTGCAG 3 cut(s) 1957, 1993, 2202
PstNI CAGNNNCTG 2 cut(s) 1712, 1988
PsuI RGATCY 5 cut(s) 916, 1305, 1657, 1867, 2098
PsyI GACNNNGTC 1 cut(s) 2324
PvuII CAGCTG 3 cut(s) 274, 1793, 1994
RsaI GTAC 3 cut(s) 837, 1797, 2385
RsaNI GTAC 3 cut(s) 836, 1796, 2384
RseI CAYNNNNRTG 3 cut(s) 633, 1158, 2646
SacI GAGCTC 1 cut(s) 499
SapI GCTCTTC 3 cut(s) 725, 945, 1507
SaqAI TTAA 8 cut(s) 702, 767, 1053, 1145, 1311, 1827, 2073, 2577
Sau3AI GATC 9 cut(s) 916, 1305, 1615, 1630, 1657, 1867, 2098, 2128, 2281
Sau96I GGNCC 9 cut(s) 340, 346, 2360, 2414, 2444, 2468, 2492, 2516, 2540
SchI GAGTC 2 cut(s) 560, 1514
SduI GDGCHC 3 cut(s) 499, 725, 1750
SfaNI GCATC 5 cut(s) 715, 1068, 1351, 1390, 1432
SfcI CTRYAG 5 cut(s) 657, 1425, 1953, 1989, 2198
SfuI TTCGAA 1 cut(s) 2366
SinI GGWCC 8 cut(s) 340, 346, 2360, 2414, 2444, 2468, 2492, 2516
SmiMI CAYNNNNRTG 3 cut(s) 633, 1158, 2646
SmlI CTYRAG 1 cut(s) 1474
SmoI CTYRAG 1 cut(s) 1474
SsiI CCGC 7 cut(s) 479, 570, 787, 1234, 1786, 1909, 2246
SspI AATATT 3 cut(s) 679, 866, 1824
SspMI CTAG 5 cut(s) 399, 1509, 1527, 2001, 2102
SstI GAGCTC 1 cut(s) 499
StyI CCWWGG 2 cut(s) 123, 2217
TaaI ACNGT 7 cut(s) 13, 462, 697, 727, 1460, 2065, 2084
TaiI ACGT 2 cut(s) 666, 1552
TaqI TCGA 7 cut(s) 444, 1716, 2067, 2086, 2328, 2366, 2679
TaqII GACCGA 1 cut(s) 1106
TatI WGTACW 2 cut(s) 835, 1795
TauI GCSGC 4 cut(s) 481, 572, 790, 1912
TfiI GAWTC 9 cut(s) 131, 188, 1103, 1493, 1514, 1544, 1640, 1804, 2088
Tru1I TTAA 8 cut(s) 702, 767, 1053, 1145, 1311, 1827, 2073, 2577
Tru9I TTAA 8 cut(s) 702, 767, 1053, 1145, 1311, 1827, 2073, 2577
TscAI CASTG 6 cut(s) 34, 424, 730, 1180, 1216, 1344
TseFI GTSAC 3 cut(s) 57, 107, 2120
Tsp45I GTSAC 3 cut(s) 57, 107, 2120
TspDTI ATGAA 8 cut(s) 605, 638, 932, 1263, 1302, 2080, 2134, 2255
TspGWI ACGGA 3 cut(s) 544, 962, 2409
TspRI CASTG 6 cut(s) 34, 424, 730, 1180, 1216, 1344
Tth111I GACNNNGTC 1 cut(s) 2324
Van91I CCANNNNNTGG 1 cut(s) 1667
VpaK11BI GGWCC 8 cut(s) 340, 346, 2360, 2414, 2444, 2468, 2492, 2516
VspI ATTAAT 1 cut(s) 2073
XapI RAATTY 4 cut(s) 322, 1463, 1609, 2293
XbaI TCTAGA 1 cut(s) 2101
XceI RCATGY 2 cut(s) 548, 632
XmiI GTMKAC 1 cut(s) 660
XspI CTAG 5 cut(s) 399, 1509, 1527, 2001, 2102
Zsp2I ATGCAT 3 cut(s) 218, 634, 1061
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.