Rroxscaffold_3G00249860
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000445
Physical Location & Seq
Forward (+)
43610564 .. 43612500
1937 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00249860.1

Sequence Viewer

Length: 573 bp
ATGGAGCAATACAAGTTCATTAAGCAAGTTGGTGCGGGTAGTTTCGGGCGTGTGTATAAAGCCATAGACAAGACCACCGGGGAGTTCGTCGCCATCAAAGAGTTGAAGCACTTGTGCAAGTCTTCGTATCTACAGCTACCAGAAGTGCAGGCACTGACCAAGTTGAAGCACCCAAACATTGTCAACCTCAAGGGAGTCCAGAGGCAACATGGCGTCGTCTTTTTCGTCTTTGAATACATGCAAGATTGCAAGGTAGCGTGTCCCAACTCATTCACCTCAAGCAAAGCGCTGGGCAGCTTTTCTCCGAAGCTGAAATTCGAGCCATGTGTTTCCAGGTCTTCCAAGGCCTTAGGGATTGAGAAGTTTGGAAGTAGCACAGCTATAATTGCAGTACTGGGTCGTTTTTCAACTGCCCCTACTGCAAGGGCAAGTTTTTGCAAAGCCTCCCAAAAATTGCCATTTGAGGACCCCGATCCTAATTTAGCTATTAACTATCAATTCTTTTATACTCAGTTCCTTGCCTTGGCAGTTTATGCTTCTGTGCCACAAGTTCATGATATCGTCAAAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

190

Amino Acids

21.04

Weight (kDa)

9.5

Isoelectric Point (pI)

33.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 4 - 82 2.5e-16 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 5 - 83 7.5e-12 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000445)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19110 AT4G19110 AT4G19110 AT5G45430 AT5G45430
fragaria_vesca FvH4_2g16890 FvH4_5g19220 FvH4_5g19340 FvH4_5g19350 FvH4_5g19360 FvH4_5g23910 FvH4_7g27810
malus_domestica MD00G1001400.v1.1 MD04G1058900.v1.1 MD04G1059300.v1.1 MD04G1059500.v1.1 MD04G1059600.v1.1 MD04G1059800.v1.1 MD04G1061700.v1.1 MD04G1061800.v1.1 MD06G1014800.v1.1 MD06G1052900.v1.1 MD06G1055500.v1.1
prunus_persica Prupe.5G021300_v2.0.a1 Prupe.5G065900_v2.0.a1 Prupe.5G066500_v2.0.a1
pyrus_communis pycom06g04440
rosa_chinensis RchiOBHm_Chr1g0374681 RchiOBHm_Chr2g0120471 RchiOBHm_Chr2g0120711 RchiOBHm_Chr7g0203821 RchiOBHm_Chr7g0203861 RchiOBHm_Chr7g0208401 RchiOBHm_Chr7g0209011 RchiOBHm_Chr7g0213341
rosa_laevigata RLG00000001348 RLG00000002813 RLG00000003173 RLG00000003212 RLG00000003503 RLG00000022835 RLG00000026723 RLG00000035532
rosa_multiflora Rmu_co7960007.1_g000001 Rmu_co7963796.1_g000001 Rmu_co8519951.1_g000002 Rmu_sc0002038.1_g000009 Rmu_sc0004947.1_g000015 Rmu_sc0007490.1_g000005 Rmu_sc0011180.1_g000003 Rmu_sc0015273.1_g000013 Rmu_ssc0000190.1_g000014 Rmu_ssc0000372.1_g000031
rosa_roxburghii Rroxscaffold_3G00246080 Rroxscaffold_3G00249860 Rroxscaffold_3G00249870 Rroxscaffold_3G00253500 Rroxscaffold_4G00283340
rosa_rugosa Rorug01G0384300 Rorug07G0079000 Rorug07G0079000 Rorug07G0079000 Rorug07G0108300 Rorug07G0141200
rosa_samantha Rh1AG395700 Rh1BG359900 Rh1DG006600 Rh1DG390900 Rh2AG287100 Rh3BG335800 Rh3CG321100 Rh5DG116800 Rh7AG273000 Rh7BG207600 Rh7BG207800 Rh7BG237700 Rh7BG268400 Rh7CG221100 Rh7CG221300 Rh7CG254000 Rh7CG257900 Rh7CG292200 Rh7DG215700 Rh7DG215900 Rh7DG244500 Rh7DG249800 Rh7DG280700
rosa_wichuraiana Rw0G010370 Rw1G035090 Rw2G023020 Rw7G018200 Rw7G020570 Rw7G023690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 35
AclWI GGATC 1 cut(s) 467
AcsI RAATTY 1 cut(s) 314
AcyI GRCGYC 1 cut(s) 213
AfaI GTAC 1 cut(s) 393
AfeI AGCGCT 1 cut(s) 288
AfiI CCNNNNNNNGG 1 cut(s) 523
AgsI TTSAA 4 cut(s) 106, 166, 233, 408
AjnI CCWGG 1 cut(s) 332
AluBI AGCT 5 cut(s) 136, 297, 310, 380, 485
AluI AGCT 5 cut(s) 136, 297, 310, 380, 485
AlwI GGATC 1 cut(s) 467
AlwNI CAGNNNCTG 1 cut(s) 154
Aor51HI AGCGCT 1 cut(s) 288
AoxI GGCC 1 cut(s) 345
ApeKI GCWGC 1 cut(s) 294
ApoI RAATTY 1 cut(s) 314
AspLEI GCGC 1 cut(s) 289
AspS9I GGNCC 1 cut(s) 466
AsuC2I CCSGG 1 cut(s) 79
AsuHPI GGTGA 1 cut(s) 265
AvaII GGWCC 1 cut(s) 466
AxyI CCTNAGG 1 cut(s) 349
BbsI GAAGAC 2 cut(s) 114, 330
BbvI GCAGC 1 cut(s) 306
BccI CCATC 1 cut(s) 101
BciT130I CCWGG 1 cut(s) 334
BcnI CCSGG 1 cut(s) 79
BfmI CTRYAG 1 cut(s) 131
BfoI RGCGCY 1 cut(s) 290
BisI GCNGC 1 cut(s) 295
BlsI GCNGC 1 cut(s) 296
BmcAI AGTACT 1 cut(s) 393
Bme1390I CCNGG 2 cut(s) 79, 334
Bme18I GGWCC 1 cut(s) 466
BmgT120I GGNCC 1 cut(s) 466
BmiI GGNNCC 1 cut(s) 468
BmrFI CCNGG 2 cut(s) 79, 334
BmrI ACTGGG 1 cut(s) 404
BmuI ACTGGG 1 cut(s) 404
BpiI GAAGAC 2 cut(s) 114, 330
BpuEI CTTGAG 2 cut(s) 173, 262
BpuMI CCSGG 1 cut(s) 79
BsaHI GRCGYC 1 cut(s) 213
BsaJI CCNNGG 3 cut(s) 78, 342, 522
Bsc4I CCNNNNNNNGG 1 cut(s) 523
Bse1I ACTGG 1 cut(s) 399
Bse21I CCTNAGG 1 cut(s) 349
BseBI CCWGG 1 cut(s) 334
BseDI CCNNGG 3 cut(s) 78, 342, 522
BseLI CCNNNNNNNGG 1 cut(s) 523
BseMII CTCAG 1 cut(s) 524
BseNI ACTGG 1 cut(s) 399
BseXI GCAGC 1 cut(s) 306
BseYI CCCAGC 1 cut(s) 289
BsgI GTGCAG 1 cut(s) 167
BshFI GGCC 1 cut(s) 347
BsiSI CCGG 1 cut(s) 78
BslFI GGGAC 1 cut(s) 246
BslI CCNNNNNNNGG 1 cut(s) 523
BsmFI GGGAC 1 cut(s) 246
BsnI GGCC 1 cut(s) 347
Bsp143I GATC 1 cut(s) 472
BspACI CCGC 1 cut(s) 35
BspANI GGCC 1 cut(s) 347
BspCNI CTCAG 1 cut(s) 523
BspHI TCATGA 1 cut(s) 553
BspLI GGNNCC 1 cut(s) 468
BspPI GGATC 1 cut(s) 467
BsrI ACTGG 1 cut(s) 399
BssECI CCNNGG 3 cut(s) 78, 342, 522
BssMI GATC 1 cut(s) 472
BssNI GRCGYC 1 cut(s) 213
BssT1I CCWWGG 2 cut(s) 342, 522
Bst2UI CCWGG 1 cut(s) 334
BstACI GRCGYC 1 cut(s) 213
BstAPI GCANNNNNTGC 1 cut(s) 533
BstC8I GCNNGC 1 cut(s) 150
BstDEI CTNAG 2 cut(s) 349, 510
BstH2I RGCGCY 1 cut(s) 290
BstHHI GCGC 1 cut(s) 289
BstKTI GATC 1 cut(s) 475
BstMBI GATC 1 cut(s) 472
BstMWI GCNNNNNNNGC 3 cut(s) 386, 419, 533
BstNI CCWGG 1 cut(s) 334
BstNSI RCATGY 1 cut(s) 241
BstSCI CCNGG 2 cut(s) 77, 332
BstSFI CTRYAG 1 cut(s) 131
BstV1I GCAGC 1 cut(s) 306
BstV2I GAAGAC 2 cut(s) 114, 330
Bsu36I CCTNAGG 1 cut(s) 349
BsuRI GGCC 1 cut(s) 347
BtsIMutI CAGTG 1 cut(s) 152
Cac8I GCNNGC 1 cut(s) 150
CaiI CAGNNNCTG 1 cut(s) 154
CciI TCATGA 1 cut(s) 553
CfoI GCGC 1 cut(s) 289
Cfr13I GGNCC 1 cut(s) 466
CseI GACGC 1 cut(s) 202
Csp6I GTAC 1 cut(s) 392
CviAII CATG 4 cut(s) 209, 238, 324, 554
CviJI RGCY 9 cut(s) 62, 136, 297, 310, 322, 347, 380, 443, 485
CviKI_1 RGCY 9 cut(s) 62, 136, 297, 310, 322, 347, 380, 443, 485
CviQI GTAC 1 cut(s) 392
DdeI CTNAG 2 cut(s) 349, 510
DpnI GATC 1 cut(s) 474
DpnII GATC 1 cut(s) 472
Eco130I CCWWGG 2 cut(s) 342, 522
Eco147I AGGCCT 1 cut(s) 347
Eco32I GATATC 1 cut(s) 559
Eco47I GGWCC 1 cut(s) 466
Eco47III AGCGCT 1 cut(s) 288
Eco81I CCTNAGG 1 cut(s) 349
EcoO109I RGGNCCY 1 cut(s) 466
EcoRII CCWGG 1 cut(s) 332
EcoRV GATATC 1 cut(s) 559
EcoT14I CCWWGG 2 cut(s) 342, 522
ErhI CCWWGG 2 cut(s) 342, 522
FaeI CATG 4 cut(s) 212, 241, 327, 557
FaiI YATR 9 cut(s) 57, 65, 210, 239, 325, 383, 507, 534, 555
FaqI GGGAC 1 cut(s) 246
FatI CATG 4 cut(s) 208, 237, 323, 553
FauI CCCGC 1 cut(s) 28
Fnu4HI GCNGC 1 cut(s) 295
Fsp4HI GCNGC 1 cut(s) 295
GlaI GCGC 1 cut(s) 288
GluI GCNGC 1 cut(s) 295
GsaI CCCAGC 1 cut(s) 293
HaeII RGCGCY 1 cut(s) 290
HaeIII GGCC 1 cut(s) 347
HapII CCGG 1 cut(s) 78
HgaI GACGC 1 cut(s) 202
HhaI GCGC 1 cut(s) 289
Hin1I GRCGYC 1 cut(s) 213
Hin1II CATG 4 cut(s) 212, 241, 327, 557
Hin6I GCGC 1 cut(s) 287
HinP1I GCGC 1 cut(s) 287
HincII GTYRAC 1 cut(s) 184
HindII GTYRAC 1 cut(s) 184
HinfI GANTC 1 cut(s) 195
HpaII CCGG 1 cut(s) 78
HphI GGTGA 1 cut(s) 265
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 1 cut(s) 306
Hpy188III TCNNGA 2 cut(s) 199, 554
Hpy8I GTNNAC 1 cut(s) 184
Hpy99I CGWCG 2 cut(s) 92, 218
HpyCH4V TGCA 7 cut(s) 117, 148, 241, 249, 389, 422, 438
HpyF10VI GCNNNNNNNGC 3 cut(s) 386, 419, 533
HpyF3I CTNAG 2 cut(s) 349, 510
Hsp92I GRCGYC 1 cut(s) 213
Hsp92II CATG 4 cut(s) 212, 241, 327, 557
HspAI GCGC 1 cut(s) 287
Kzo9I GATC 1 cut(s) 472
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 8 cut(s) 91, 134, 153, 212, 275, 319, 346, 380
Lsp1109I GCAGC 1 cut(s) 306
MalI GATC 1 cut(s) 474
MboI GATC 1 cut(s) 472
MboII GAAGA 2 cut(s) 114, 330
MluCI AATT 5 cut(s) 314, 384, 452, 478, 497
MlyI GAGTC 1 cut(s) 204
MnlI CCTC 5 cut(s) 195, 197, 286, 454, 457
MseI TTAA 2 cut(s) 21, 489
MspI CCGG 1 cut(s) 78
MspR9I CCNGG 2 cut(s) 79, 334
MvaI CCWGG 1 cut(s) 334
MwoI GCNNNNNNNGC 3 cut(s) 386, 419, 533
NciI CCSGG 1 cut(s) 79
NdeII GATC 1 cut(s) 472
NlaIII CATG 4 cut(s) 212, 241, 327, 557
NlaIV GGNNCC 1 cut(s) 468
NspI RCATGY 1 cut(s) 241
PagI TCATGA 1 cut(s) 553
PceI AGGCCT 1 cut(s) 347
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PkrI GCNGC 1 cut(s) 296
PleI GAGTC 1 cut(s) 203
PpsI GAGTC 1 cut(s) 203
PpuMI RGGWCCY 1 cut(s) 466
Psp5II RGGWCCY 1 cut(s) 466
Psp6I CCWGG 1 cut(s) 332
PspFI CCCAGC 1 cut(s) 289
PspGI CCWGG 1 cut(s) 332
PspN4I GGNNCC 1 cut(s) 468
PspPI GGNCC 1 cut(s) 466
PspPPI RGGWCCY 1 cut(s) 466
PstNI CAGNNNCTG 1 cut(s) 154
RsaI GTAC 1 cut(s) 393
RsaNI GTAC 1 cut(s) 392
SaqAI TTAA 2 cut(s) 21, 489
SatI GCNGC 1 cut(s) 295
Sau3AI GATC 1 cut(s) 472
Sau96I GGNCC 1 cut(s) 466
ScaI AGTACT 1 cut(s) 393
SchI GAGTC 1 cut(s) 204
ScrFI CCNGG 2 cut(s) 79, 334
SetI ASST 9 cut(s) 138, 189, 255, 278, 299, 312, 338, 382, 487
SfcI CTRYAG 1 cut(s) 131
SinI GGWCC 1 cut(s) 466
SmlI CTYRAG 2 cut(s) 188, 277
SmoI CTYRAG 2 cut(s) 188, 277
Sse9I AATT 5 cut(s) 314, 384, 452, 478, 497
SseBI AGGCCT 1 cut(s) 347
SsiI CCGC 1 cut(s) 35
StuI AGGCCT 1 cut(s) 347
StyD4I CCNGG 2 cut(s) 77, 332
StyI CCWWGG 2 cut(s) 342, 522
TaqI TCGA 1 cut(s) 318
TasI AATT 5 cut(s) 314, 384, 452, 478, 497
TatI WGTACW 1 cut(s) 391
Tru1I TTAA 2 cut(s) 21, 489
Tru9I TTAA 2 cut(s) 21, 489
TscAI CASTG 1 cut(s) 159
TseI GCWGC 1 cut(s) 294
TspDTI ATGAA 2 cut(s) 7, 542
TspRI CASTG 1 cut(s) 159
VpaK11BI GGWCC 1 cut(s) 466
XapI RAATTY 1 cut(s) 314
XceI RCATGY 1 cut(s) 241
XcmI CCANNNNNNNNNTGG 1 cut(s) 206
ZrmI AGTACT 1 cut(s) 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.