RchiOBHm_Chr2g0120711
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000445
Physical Location & Seq
Reverse (-)
33552689 .. 33553399
711 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49330

Sequence Viewer

Length: 711 bp
ATGGAAGGTAGCCCTGGTGATCTTATTAATGAGAGGCGGAGCAGGATAATCCCTTTCTCGGAGGCCGAAATCCGATCATTGAGCCGTCAGGTGTTGCAAGGCCTTGAATTCATGCATCACCAACGCGGGTTCATGCACCAGGATCTGAAGCCGGAGAATCTTTTGGTGAACAAGGGCGACATCAAGATTTCGAATCTGGTTACTGCTACAGAGATCGACTGCGGCGGCCAAGCCCATCATCATTACGTCACCACAAGGTGGTACAGAGCCCCCGAGATGCTGTTTCGGGTCTTTGTGAAAAACGAGAGCCTTCGACCTTTTGAGTACGATGAGAAGGTAGACATATGGGCGATGGGGACGATCATCGCAGAGTTGTTTCTCTTGCACCCTCTCTTCCAGGGTGACGATTCGCCAGATCAGCTTTACAGGATATGCGAAGTCATCAGGGCTCCAAGTAGGGATTCACGGATGATGCCTAAACTTGGGCCGGATAATGGTGTGGGTCTTCAAGCATTGATGCCATATGCCAGTGAATCGGCCATCGATCTCATAGAGTCTCTTTGTTCTTGGGACCCTTCGAAAAGGCCTAGTGCTAAGGAAGCTCTCCAACATCCCTTCTTCAAGAGAGGGCAGAATGTTGACGCTCCTCCTGGGTTCTCATATTGCACTCATACAAGGAACAGTATGGTTCCAAAGATGAGAGAGTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

236

Amino Acids

27.04

Weight (kDa)

6.31

Isoelectric Point (pI)

62.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 4 - 207 2.4e-40 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 18 - 128 4.1e-09 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000445)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19110 AT4G19110 AT4G19110 AT5G45430 AT5G45430
fragaria_vesca FvH4_2g16890 FvH4_5g19220 FvH4_5g19340 FvH4_5g19350 FvH4_5g19360 FvH4_5g23910 FvH4_7g27810
malus_domestica MD00G1001400.v1.1 MD04G1058900.v1.1 MD04G1059300.v1.1 MD04G1059500.v1.1 MD04G1059600.v1.1 MD04G1059800.v1.1 MD04G1061700.v1.1 MD04G1061800.v1.1 MD06G1014800.v1.1 MD06G1052900.v1.1 MD06G1055500.v1.1
prunus_persica Prupe.5G021300_v2.0.a1 Prupe.5G065900_v2.0.a1 Prupe.5G066500_v2.0.a1
pyrus_communis pycom06g04440
rosa_chinensis RchiOBHm_Chr1g0374681 RchiOBHm_Chr2g0120471 RchiOBHm_Chr2g0120711 RchiOBHm_Chr7g0203821 RchiOBHm_Chr7g0203861 RchiOBHm_Chr7g0208401 RchiOBHm_Chr7g0209011 RchiOBHm_Chr7g0213341
rosa_laevigata RLG00000001348 RLG00000002813 RLG00000003173 RLG00000003212 RLG00000003503 RLG00000022835 RLG00000026723 RLG00000035532
rosa_multiflora Rmu_co7960007.1_g000001 Rmu_co7963796.1_g000001 Rmu_co8519951.1_g000002 Rmu_sc0002038.1_g000009 Rmu_sc0004947.1_g000015 Rmu_sc0007490.1_g000005 Rmu_sc0011180.1_g000003 Rmu_sc0015273.1_g000013 Rmu_ssc0000190.1_g000014 Rmu_ssc0000372.1_g000031
rosa_roxburghii Rroxscaffold_3G00246080 Rroxscaffold_3G00249860 Rroxscaffold_3G00249870 Rroxscaffold_3G00253500 Rroxscaffold_4G00283340
rosa_rugosa Rorug01G0384300 Rorug07G0079000 Rorug07G0079000 Rorug07G0079000 Rorug07G0108300 Rorug07G0141200
rosa_samantha Rh1AG395700 Rh1BG359900 Rh1DG006600 Rh1DG390900 Rh2AG287100 Rh3BG335800 Rh3CG321100 Rh5DG116800 Rh7AG273000 Rh7BG207600 Rh7BG207800 Rh7BG237700 Rh7BG268400 Rh7CG221100 Rh7CG221300 Rh7CG254000 Rh7CG257900 Rh7CG292200 Rh7DG215700 Rh7DG215900 Rh7DG244500 Rh7DG249800 Rh7DG280700
rosa_wichuraiana Rw0G010370 Rw1G035090 Rw2G023020 Rw7G018200 Rw7G020570 Rw7G023690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 709
AccB7I CCANNNNNTGG 1 cut(s) 258
AccI GTMKAC 1 cut(s) 339
AccII CGCG 1 cut(s) 126
AciI CCGC 4 cut(s) 37, 126, 222, 225
AclWI GGATC 1 cut(s) 150
AcoI YGGCCR 2 cut(s) 226, 537
AcsI RAATTY 1 cut(s) 107
AcuI CTGAAG 1 cut(s) 167
AdeI CACNNNGTG 1 cut(s) 258
AfaI GTAC 2 cut(s) 263, 326
AfiI CCNNNNNNNGG 4 cut(s) 58, 258, 482, 494
AgsI TTSAA 3 cut(s) 107, 509, 622
AjnI CCWGG 4 cut(s) 13, 138, 396, 649
AjuI GAANNNNNNNTTGG 2 cut(s) 445, 477
AluBI AGCT 2 cut(s) 421, 602
AluI AGCT 2 cut(s) 421, 602
Alw26I GTCTC 1 cut(s) 561
AlwI GGATC 1 cut(s) 150
AlwNI CAGNNNCTG 1 cut(s) 145
Ama87I CYCGRG 1 cut(s) 272
AoxI GGCC 6 cut(s) 63, 100, 226, 485, 537, 584
ApoI RAATTY 1 cut(s) 107
AseI ATTAAT 1 cut(s) 27
AspS9I GGNCC 2 cut(s) 485, 571
AsuHPI GGTGA 5 cut(s) 29, 110, 178, 241, 413
AsuII TTCGAA 2 cut(s) 191, 578
AvaI CYCGRG 1 cut(s) 272
AvaII GGWCC 1 cut(s) 571
BanII GRGCYC 2 cut(s) 271, 451
BbsI GAAGAC 1 cut(s) 497
BccI CCATC 3 cut(s) 243, 346, 548
BceAI ACGGC 1 cut(s) 69
BciT130I CCWGG 4 cut(s) 15, 140, 398, 651
BcoDI GTCTC 1 cut(s) 561
BfaI CTAG 1 cut(s) 588
BfmI CTRYAG 1 cut(s) 207
BisI GCNGC 2 cut(s) 223, 226
BlsI GCNGC 2 cut(s) 224, 227
Bme1390I CCNGG 4 cut(s) 15, 140, 398, 651
Bme18I GGWCC 1 cut(s) 571
BmeT110I CYCGRG 1 cut(s) 272
BmgT120I GGNCC 2 cut(s) 485, 571
BmiI GGNNCC 4 cut(s) 450, 572, 573, 690
BmrFI CCNGG 4 cut(s) 15, 140, 398, 651
BmsI GCATC 4 cut(s) 124, 267, 462, 507
BpiI GAAGAC 1 cut(s) 497
Bpu10I CCTNAGC 1 cut(s) 594
Bpu14I TTCGAA 2 cut(s) 191, 578
Bsa29I ATCGAT 1 cut(s) 543
BsaJI CCNNGG 3 cut(s) 13, 397, 650
Bsc4I CCNNNNNNNGG 4 cut(s) 58, 258, 482, 494
Bse1I ACTGG 1 cut(s) 528
BseBI CCWGG 4 cut(s) 15, 140, 398, 651
BseCI ATCGAT 1 cut(s) 543
BseDI CCNNGG 3 cut(s) 13, 397, 650
BseGI GGATG 2 cut(s) 474, 610
BseLI CCNNNNNNNGG 4 cut(s) 58, 258, 482, 494
BseNI ACTGG 1 cut(s) 528
BseRI GAGGAG 1 cut(s) 636
Bsh1236I CGCG 1 cut(s) 126
BshFI GGCC 6 cut(s) 65, 102, 228, 487, 539, 586
BshVI ATCGAT 1 cut(s) 543
BsiHKCI CYCGRG 1 cut(s) 272
BsiSI CCGG 2 cut(s) 152, 488
BslFI GGGAC 2 cut(s) 370, 584
BslI CCNNNNNNNGG 4 cut(s) 58, 258, 482, 494
BsmAI GTCTC 1 cut(s) 561
BsmFI GGGAC 2 cut(s) 370, 584
BsnI GGCC 6 cut(s) 65, 102, 228, 487, 539, 586
BsoBI CYCGRG 1 cut(s) 272
Bsp119I TTCGAA 2 cut(s) 191, 578
Bsp1286I GDGCHC 2 cut(s) 271, 451
Bsp143I GATC 7 cut(s) 19, 74, 142, 213, 360, 415, 544
BspACI CCGC 4 cut(s) 37, 126, 222, 225
BspANI GGCC 6 cut(s) 65, 102, 228, 487, 539, 586
BspDI ATCGAT 1 cut(s) 543
BspFNI CGCG 1 cut(s) 126
BspLI GGNNCC 4 cut(s) 450, 572, 573, 690
BspPI GGATC 1 cut(s) 150
BspT104I TTCGAA 2 cut(s) 191, 578
BsrI ACTGG 1 cut(s) 528
BssECI CCNNGG 3 cut(s) 13, 397, 650
BssMI GATC 7 cut(s) 19, 74, 142, 213, 360, 415, 544
Bst2UI CCWGG 4 cut(s) 15, 140, 398, 651
Bst4CI ACNGT 1 cut(s) 683
Bst6I CTCTTC 1 cut(s) 398
BstBI TTCGAA 2 cut(s) 191, 578
BstDEI CTNAG 1 cut(s) 594
BstF5I GGATG 2 cut(s) 474, 610
BstFNI CGCG 1 cut(s) 126
BstKTI GATC 7 cut(s) 22, 77, 145, 216, 363, 418, 547
BstMAI GTCTC 1 cut(s) 561
BstMBI GATC 7 cut(s) 19, 74, 142, 213, 360, 415, 544
BstMWI GCNNNNNNNGC 2 cut(s) 418, 599
BstNI CCWGG 4 cut(s) 15, 140, 398, 651
BstSCI CCNGG 4 cut(s) 13, 138, 396, 649
BstSFI CTRYAG 1 cut(s) 207
BstUI CGCG 1 cut(s) 126
BstV2I GAAGAC 1 cut(s) 497
BstX2I RGATCY 1 cut(s) 142
BstYI RGATCY 1 cut(s) 142
Bsu15I ATCGAT 1 cut(s) 543
BsuRI GGCC 6 cut(s) 65, 102, 228, 487, 539, 586
BsuTUI ATCGAT 1 cut(s) 543
BtgZI GCGATG 2 cut(s) 349, 365
BtsCI GGATG 2 cut(s) 474, 610
BtsIMutI CAGTG 1 cut(s) 535
CaiI CAGNNNCTG 1 cut(s) 145
Cfr13I GGNCC 2 cut(s) 485, 571
ClaI ATCGAT 1 cut(s) 543
CseI GACGC 1 cut(s) 650
Csp6I GTAC 2 cut(s) 262, 325
CviAII CATG 2 cut(s) 112, 133
CviQI GTAC 2 cut(s) 262, 325
DdeI CTNAG 1 cut(s) 594
DpnI GATC 7 cut(s) 21, 76, 144, 215, 362, 417, 546
DpnII GATC 7 cut(s) 19, 74, 142, 213, 360, 415, 544
DraIII CACNNNGTG 1 cut(s) 258
EaeI YGGCCR 2 cut(s) 226, 537
Eam1104I CTCTTC 1 cut(s) 398
EarI CTCTTC 1 cut(s) 398
EciI GGCGGA 1 cut(s) 52
Eco147I AGGCCT 2 cut(s) 102, 586
Eco24I GRGCYC 2 cut(s) 271, 451
Eco47I GGWCC 1 cut(s) 571
Eco57I CTGAAG 1 cut(s) 167
Eco88I CYCGRG 1 cut(s) 272
EcoO109I RGGNCCY 1 cut(s) 571
EcoRI GAATTC 1 cut(s) 107
EcoRII CCWGG 4 cut(s) 13, 138, 396, 649
EcoT22I ATGCAT 1 cut(s) 117
EcoT38I GRGCYC 2 cut(s) 271, 451
FaeI CATG 2 cut(s) 115, 136
FaqI GGGAC 2 cut(s) 370, 584
FatI CATG 2 cut(s) 111, 132
FauI CCCGC 1 cut(s) 119
FauNDI CATATG 2 cut(s) 344, 523
FblI GTMKAC 1 cut(s) 339
Fnu4HI GCNGC 2 cut(s) 223, 226
FokI GGATG 2 cut(s) 481, 597
FriOI GRGCYC 2 cut(s) 271, 451
Fsp4HI GCNGC 2 cut(s) 223, 226
FspBI CTAG 1 cut(s) 588
GluI GCNGC 2 cut(s) 223, 226
HaeIII GGCC 6 cut(s) 65, 102, 228, 487, 539, 586
HapII CCGG 2 cut(s) 152, 488
HgaI GACGC 1 cut(s) 650
Hin1II CATG 2 cut(s) 115, 136
HincII GTYRAC 1 cut(s) 640
HindII GTYRAC 1 cut(s) 640
HinfI GANTC 6 cut(s) 157, 193, 407, 461, 533, 554
HpaII CCGG 2 cut(s) 152, 488
HphI GGTGA 5 cut(s) 29, 110, 178, 241, 413
Hpy166II GTNNAC 3 cut(s) 169, 340, 640
Hpy188I TCNGA 3 cut(s) 61, 74, 147
Hpy188III TCNNGA 2 cut(s) 184, 622
Hpy8I GTNNAC 3 cut(s) 169, 340, 640
HpyAV CCTTC 4 cut(s) 320, 328, 585, 625
HpyCH4III ACNGT 1 cut(s) 683
HpyCH4IV ACGT 1 cut(s) 246
HpyCH4V TGCA 5 cut(s) 97, 115, 136, 385, 666
HpyF10VI GCNNNNNNNGC 2 cut(s) 418, 599
HpyF3I CTNAG 1 cut(s) 594
HpySE526I ACGT 1 cut(s) 246
Hsp92II CATG 2 cut(s) 115, 136
KflI GGGWCCC 1 cut(s) 571
Kzo9I GATC 7 cut(s) 19, 74, 142, 213, 360, 415, 544
LmnI GCTCC 3 cut(s) 39, 454, 649
LweI GCATC 4 cut(s) 124, 267, 462, 507
MaeI CTAG 1 cut(s) 588
MaeII ACGT 1 cut(s) 246
MaeIII GTNAC 3 cut(s) 199, 247, 401
MalI GATC 7 cut(s) 21, 76, 144, 215, 362, 417, 546
MboI GATC 7 cut(s) 19, 74, 142, 213, 360, 415, 544
MboII GAAGA 3 cut(s) 385, 497, 610
MflI RGATCY 1 cut(s) 142
MhlI GDGCHC 2 cut(s) 271, 451
MluCI AATT 1 cut(s) 107
MlyI GAGTC 1 cut(s) 563
MmeI TCCRAC 1 cut(s) 631
MnlI CCTC 5 cut(s) 27, 55, 399, 620, 657
Mph1103I ATGCAT 1 cut(s) 117
MseI TTAA 1 cut(s) 27
MspI CCGG 2 cut(s) 152, 488
MspR9I CCNGG 4 cut(s) 15, 140, 398, 651
MvaI CCWGG 4 cut(s) 15, 140, 398, 651
MvnI CGCG 1 cut(s) 126
MwoI GCNNNNNNNGC 2 cut(s) 418, 599
NdeI CATATG 2 cut(s) 344, 523
NdeII GATC 7 cut(s) 19, 74, 142, 213, 360, 415, 544
NlaIII CATG 2 cut(s) 115, 136
NlaIV GGNNCC 4 cut(s) 450, 572, 573, 690
NmuCI GTSAC 2 cut(s) 247, 401
NsiI ATGCAT 1 cut(s) 117
NspV TTCGAA 2 cut(s) 191, 578
PceI AGGCCT 2 cut(s) 102, 586
PfeI GAWTC 5 cut(s) 157, 193, 407, 461, 533
PflMI CCANNNNNTGG 1 cut(s) 258
PkrI GCNGC 2 cut(s) 224, 227
PleI GAGTC 1 cut(s) 562
PpsI GAGTC 1 cut(s) 562
PpuMI RGGWCCY 1 cut(s) 571
PshBI ATTAAT 1 cut(s) 27
PsiI TTATAA 1 cut(s) 709
Psp5II RGGWCCY 1 cut(s) 571
Psp6I CCWGG 4 cut(s) 13, 138, 396, 649
PspGI CCWGG 4 cut(s) 13, 138, 396, 649
PspN4I GGNNCC 4 cut(s) 450, 572, 573, 690
PspPI GGNCC 2 cut(s) 485, 571
PspPPI RGGWCCY 1 cut(s) 571
PstNI CAGNNNCTG 1 cut(s) 145
PsuI RGATCY 1 cut(s) 142
RsaI GTAC 2 cut(s) 263, 326
RsaNI GTAC 2 cut(s) 262, 325
SaqAI TTAA 1 cut(s) 27
SatI GCNGC 2 cut(s) 223, 226
Sau3AI GATC 7 cut(s) 19, 74, 142, 213, 360, 415, 544
Sau96I GGNCC 2 cut(s) 485, 571
SchI GAGTC 1 cut(s) 563
ScrFI CCNGG 4 cut(s) 15, 140, 398, 651
SduI GDGCHC 2 cut(s) 271, 451
SetI ASST 8 cut(s) 10, 93, 249, 260, 319, 339, 423, 604
SfaNI GCATC 4 cut(s) 124, 267, 462, 507
SfcI CTRYAG 1 cut(s) 207
SfuI TTCGAA 2 cut(s) 191, 578
SinI GGWCC 1 cut(s) 571
Sse9I AATT 1 cut(s) 107
SseBI AGGCCT 2 cut(s) 102, 586
SsiI CCGC 4 cut(s) 37, 126, 222, 225
SspMI CTAG 1 cut(s) 588
StuI AGGCCT 2 cut(s) 102, 586
StyD4I CCNGG 4 cut(s) 13, 138, 396, 649
TaaI ACNGT 1 cut(s) 683
TaiI ACGT 1 cut(s) 249
TaqI TCGA 5 cut(s) 191, 216, 313, 543, 578
TasI AATT 1 cut(s) 107
TauI GCSGC 2 cut(s) 225, 228
TfiI GAWTC 5 cut(s) 157, 193, 407, 461, 533
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TscAI CASTG 1 cut(s) 535
TseFI GTSAC 2 cut(s) 247, 401
Tsp45I GTSAC 2 cut(s) 247, 401
TspDTI ATGAA 2 cut(s) 100, 121
TspGWI ACGGA 1 cut(s) 481
TspRI CASTG 1 cut(s) 535
Van91I CCANNNNNTGG 1 cut(s) 258
VpaK11BI GGWCC 1 cut(s) 571
VspI ATTAAT 1 cut(s) 27
XapI RAATTY 1 cut(s) 107
XmiI GTMKAC 1 cut(s) 339
XspI CTAG 1 cut(s) 588
Zsp2I ATGCAT 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.