Rw2G023020
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000445
Physical Location & Seq
Reverse (-)
33277544 .. 33278284
741 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G023020.1

Sequence Viewer

Length: 636 bp
ATGGAGGGTAGCCTTGGTGATCTTATTAATGAGAGGCGGAGCAGGAGAATCCCTTTCTCGGAGGCCGAAATCCAATCATTGAGCCGTCAGGTGTTGCAAGGCCTTGAATTCATGCATCACCAACGCTGGTTCATGCACCGGGATCTGAAGCCGGAGAATCTTTTGGTGAACAAGGGCGACATCAAGATTTCGGATCTGGTCACCACAAGGTGGTACAGAGCCCCCGAGATGCTGTTTCGAGTCTTTGTGAAAAACGAGAGCCTTCGACCTTTTGAGTACAATGAGAAGGTAGACATATGGGCGATGGGGACGATCATCGCAGAGATATGCGAAGTCATCGGGGCTCCAAGTAGGGATTCACGGACGATGCCTAAACTTGGGCCGGATAATGGTGTGGGTCTTCGAGCATTGATGCCATATGCCAGTGAATCGACCATCGATCTCATAGAGTCTCTTTGTTCTTGGGACCCTTCGAAAAGGCCTAGTGCTAAGGAAGCTCTCCAACATCCCTTCTTCAAGAGAGGGCAGAATGTTGACGCTCCTCCTGGGTTCTCATATTGCACTCATACAAGGAACAGTATGGTTCCAGAGATGAGAGAGTTATCAACCATGCAGCCAATACTGGGAGCCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

211

Amino Acids

24.24

Weight (kDa)

6.97

Isoelectric Point (pI)

65.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 4 - 172 1e-29 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 6 - 166 8.5e-13 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000445)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19110 AT4G19110 AT4G19110 AT5G45430 AT5G45430
fragaria_vesca FvH4_2g16890 FvH4_5g19220 FvH4_5g19340 FvH4_5g19350 FvH4_5g19360 FvH4_5g23910 FvH4_7g27810
malus_domestica MD00G1001400.v1.1 MD04G1058900.v1.1 MD04G1059300.v1.1 MD04G1059500.v1.1 MD04G1059600.v1.1 MD04G1059800.v1.1 MD04G1061700.v1.1 MD04G1061800.v1.1 MD06G1014800.v1.1 MD06G1052900.v1.1 MD06G1055500.v1.1
prunus_persica Prupe.5G021300_v2.0.a1 Prupe.5G065900_v2.0.a1 Prupe.5G066500_v2.0.a1
pyrus_communis pycom06g04440
rosa_chinensis RchiOBHm_Chr1g0374681 RchiOBHm_Chr2g0120471 RchiOBHm_Chr2g0120711 RchiOBHm_Chr7g0203821 RchiOBHm_Chr7g0203861 RchiOBHm_Chr7g0208401 RchiOBHm_Chr7g0209011 RchiOBHm_Chr7g0213341
rosa_laevigata RLG00000001348 RLG00000002813 RLG00000003173 RLG00000003212 RLG00000003503 RLG00000022835 RLG00000026723 RLG00000035532
rosa_multiflora Rmu_co7960007.1_g000001 Rmu_co7963796.1_g000001 Rmu_co8519951.1_g000002 Rmu_sc0002038.1_g000009 Rmu_sc0004947.1_g000015 Rmu_sc0007490.1_g000005 Rmu_sc0011180.1_g000003 Rmu_sc0015273.1_g000013 Rmu_ssc0000190.1_g000014 Rmu_ssc0000372.1_g000031
rosa_roxburghii Rroxscaffold_3G00246080 Rroxscaffold_3G00249860 Rroxscaffold_3G00249870 Rroxscaffold_3G00253500 Rroxscaffold_4G00283340
rosa_rugosa Rorug01G0384300 Rorug07G0079000 Rorug07G0079000 Rorug07G0079000 Rorug07G0108300 Rorug07G0141200
rosa_samantha Rh1AG395700 Rh1BG359900 Rh1DG006600 Rh1DG390900 Rh2AG287100 Rh3BG335800 Rh3CG321100 Rh5DG116800 Rh7AG273000 Rh7BG207600 Rh7BG207800 Rh7BG237700 Rh7BG268400 Rh7CG221100 Rh7CG221300 Rh7CG254000 Rh7CG257900 Rh7CG292200 Rh7DG215700 Rh7DG215900 Rh7DG244500 Rh7DG249800 Rh7DG280700
rosa_wichuraiana Rw0G010370 Rw1G035090 Rw2G023020 Rw7G018200 Rw7G020570 Rw7G023690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 210
AccI GTMKAC 1 cut(s) 291
AciI CCGC 1 cut(s) 37
AclWI GGATC 2 cut(s) 150, 201
AcsI RAATTY 1 cut(s) 107
AcuI CTGAAG 1 cut(s) 167
AdeI CACNNNGTG 1 cut(s) 210
AfaI GTAC 2 cut(s) 215, 278
AfiI CCNNNNNNNGG 5 cut(s) 58, 210, 377, 389, 623
AgsI TTSAA 2 cut(s) 107, 517
AjnI CCWGG 1 cut(s) 544
AjuI GAANNNNNNNTTGG 2 cut(s) 340, 372
AluBI AGCT 1 cut(s) 497
AluI AGCT 1 cut(s) 497
Alw26I GTCTC 1 cut(s) 456
AlwI GGATC 2 cut(s) 150, 201
Ama87I CYCGRG 1 cut(s) 224
AoxI GGCC 4 cut(s) 63, 100, 380, 479
ApeKI GCWGC 1 cut(s) 613
ApoI RAATTY 1 cut(s) 107
AseI ATTAAT 1 cut(s) 27
AspS9I GGNCC 2 cut(s) 380, 466
AsuC2I CCSGG 1 cut(s) 140
AsuHPI GGTGA 4 cut(s) 29, 110, 178, 193
AsuII TTCGAA 1 cut(s) 473
AvaI CYCGRG 1 cut(s) 224
AvaII GGWCC 1 cut(s) 466
BanII GRGCYC 2 cut(s) 223, 346
BbsI GAAGAC 1 cut(s) 392
BbvI GCAGC 1 cut(s) 625
BccI CCATC 2 cut(s) 298, 443
BceAI ACGGC 1 cut(s) 69
BciT130I CCWGG 1 cut(s) 546
BcnI CCSGG 1 cut(s) 140
BcoDI GTCTC 1 cut(s) 456
BfaI CTAG 1 cut(s) 483
BisI GCNGC 1 cut(s) 614
BlsI GCNGC 1 cut(s) 615
Bme1390I CCNGG 2 cut(s) 140, 546
Bme18I GGWCC 1 cut(s) 466
BmeT110I CYCGRG 1 cut(s) 224
BmgT120I GGNCC 2 cut(s) 380, 466
BmiI GGNNCC 5 cut(s) 345, 467, 468, 585, 628
BmrFI CCNGG 2 cut(s) 140, 546
BmrI ACTGGG 1 cut(s) 632
BmsI GCATC 4 cut(s) 124, 219, 357, 402
BmuI ACTGGG 1 cut(s) 632
BpiI GAAGAC 1 cut(s) 392
Bpu10I CCTNAGC 1 cut(s) 489
Bpu14I TTCGAA 1 cut(s) 473
BpuMI CCSGG 1 cut(s) 140
Bsa29I ATCGAT 1 cut(s) 438
BsaJI CCNNGG 2 cut(s) 13, 545
Bsc4I CCNNNNNNNGG 5 cut(s) 58, 210, 377, 389, 623
Bse1I ACTGG 2 cut(s) 423, 627
BseBI CCWGG 1 cut(s) 546
BseCI ATCGAT 1 cut(s) 438
BseDI CCNNGG 2 cut(s) 13, 545
BseGI GGATG 1 cut(s) 505
BseLI CCNNNNNNNGG 5 cut(s) 58, 210, 377, 389, 623
BseNI ACTGG 2 cut(s) 423, 627
BseRI GAGGAG 1 cut(s) 531
BseXI GCAGC 1 cut(s) 625
BshFI GGCC 4 cut(s) 65, 102, 382, 481
BshVI ATCGAT 1 cut(s) 438
BsiHKCI CYCGRG 1 cut(s) 224
BsiSI CCGG 3 cut(s) 139, 152, 383
BslFI GGGAC 2 cut(s) 322, 479
BslI CCNNNNNNNGG 5 cut(s) 58, 210, 377, 389, 623
BsmAI GTCTC 1 cut(s) 456
BsmFI GGGAC 2 cut(s) 322, 479
BsnI GGCC 4 cut(s) 65, 102, 382, 481
BsoBI CYCGRG 1 cut(s) 224
Bsp119I TTCGAA 1 cut(s) 473
Bsp1286I GDGCHC 2 cut(s) 223, 346
Bsp143I GATC 5 cut(s) 19, 142, 193, 312, 439
BspACI CCGC 1 cut(s) 37
BspANI GGCC 4 cut(s) 65, 102, 382, 481
BspDI ATCGAT 1 cut(s) 438
BspLI GGNNCC 5 cut(s) 345, 467, 468, 585, 628
BspPI GGATC 2 cut(s) 150, 201
BspT104I TTCGAA 1 cut(s) 473
BsrI ACTGG 2 cut(s) 423, 627
BssECI CCNNGG 2 cut(s) 13, 545
BssMI GATC 5 cut(s) 19, 142, 193, 312, 439
BssT1I CCWWGG 1 cut(s) 13
Bst2UI CCWGG 1 cut(s) 546
Bst4CI ACNGT 1 cut(s) 578
BstBI TTCGAA 1 cut(s) 473
BstDEI CTNAG 1 cut(s) 489
BstEII GGTNACC 1 cut(s) 199
BstF5I GGATG 1 cut(s) 505
BstKTI GATC 5 cut(s) 22, 145, 196, 315, 442
BstMAI GTCTC 1 cut(s) 456
BstMBI GATC 5 cut(s) 19, 142, 193, 312, 439
BstMWI GCNNNNNNNGC 1 cut(s) 494
BstNI CCWGG 1 cut(s) 546
BstPI GGTNACC 1 cut(s) 199
BstSCI CCNGG 2 cut(s) 138, 544
BstV1I GCAGC 1 cut(s) 625
BstV2I GAAGAC 1 cut(s) 392
BstX2I RGATCY 2 cut(s) 142, 193
BstYI RGATCY 2 cut(s) 142, 193
Bsu15I ATCGAT 1 cut(s) 438
BsuRI GGCC 4 cut(s) 65, 102, 382, 481
BsuTUI ATCGAT 1 cut(s) 438
BtgZI GCGATG 2 cut(s) 301, 317
BtsCI GGATG 1 cut(s) 505
BtsIMutI CAGTG 1 cut(s) 430
Cfr13I GGNCC 2 cut(s) 380, 466
ClaI ATCGAT 1 cut(s) 438
CseI GACGC 1 cut(s) 545
Csp6I GTAC 2 cut(s) 214, 277
CviAII CATG 3 cut(s) 112, 133, 610
CviQI GTAC 2 cut(s) 214, 277
DdeI CTNAG 1 cut(s) 489
DpnI GATC 5 cut(s) 21, 144, 195, 314, 441
DpnII GATC 5 cut(s) 19, 142, 193, 312, 439
DraIII CACNNNGTG 1 cut(s) 210
EciI GGCGGA 1 cut(s) 52
Eco130I CCWWGG 1 cut(s) 13
Eco147I AGGCCT 2 cut(s) 102, 481
Eco24I GRGCYC 2 cut(s) 223, 346
Eco47I GGWCC 1 cut(s) 466
Eco57I CTGAAG 1 cut(s) 167
Eco88I CYCGRG 1 cut(s) 224
Eco91I GGTNACC 1 cut(s) 199
EcoO109I RGGNCCY 1 cut(s) 466
EcoO65I GGTNACC 1 cut(s) 199
EcoRI GAATTC 1 cut(s) 107
EcoRII CCWGG 1 cut(s) 544
EcoT14I CCWWGG 1 cut(s) 13
EcoT22I ATGCAT 1 cut(s) 117
EcoT38I GRGCYC 2 cut(s) 223, 346
ErhI CCWWGG 1 cut(s) 13
FaeI CATG 3 cut(s) 115, 136, 613
FaqI GGGAC 2 cut(s) 322, 479
FatI CATG 3 cut(s) 111, 132, 609
FauNDI CATATG 2 cut(s) 296, 418
FblI GTMKAC 1 cut(s) 291
Fnu4HI GCNGC 1 cut(s) 614
FokI GGATG 1 cut(s) 492
FriOI GRGCYC 2 cut(s) 223, 346
Fsp4HI GCNGC 1 cut(s) 614
FspBI CTAG 1 cut(s) 483
GluI GCNGC 1 cut(s) 614
HaeIII GGCC 4 cut(s) 65, 102, 382, 481
HapII CCGG 3 cut(s) 139, 152, 383
HgaI GACGC 1 cut(s) 545
Hin1II CATG 3 cut(s) 115, 136, 613
HincII GTYRAC 1 cut(s) 535
HindII GTYRAC 1 cut(s) 535
HinfI GANTC 6 cut(s) 48, 157, 240, 356, 428, 449
HpaII CCGG 3 cut(s) 139, 152, 383
HphI GGTGA 4 cut(s) 29, 110, 178, 193
Hpy166II GTNNAC 3 cut(s) 169, 292, 535
Hpy188I TCNGA 3 cut(s) 61, 147, 193
Hpy188III TCNNGA 3 cut(s) 184, 517, 587
Hpy8I GTNNAC 3 cut(s) 169, 292, 535
HpyAV CCTTC 4 cut(s) 272, 280, 480, 520
HpyCH4III ACNGT 1 cut(s) 578
HpyCH4V TGCA 5 cut(s) 97, 115, 136, 561, 613
HpyF10VI GCNNNNNNNGC 1 cut(s) 494
HpyF3I CTNAG 1 cut(s) 489
Hsp92II CATG 3 cut(s) 115, 136, 613
KflI GGGWCCC 1 cut(s) 466
Kzo9I GATC 5 cut(s) 19, 142, 193, 312, 439
LmnI GCTCC 4 cut(s) 39, 349, 544, 626
Lsp1109I GCAGC 1 cut(s) 625
LweI GCATC 4 cut(s) 124, 219, 357, 402
MaeI CTAG 1 cut(s) 483
MaeIII GTNAC 1 cut(s) 199
MalI GATC 5 cut(s) 21, 144, 195, 314, 441
MboI GATC 5 cut(s) 19, 142, 193, 312, 439
MboII GAAGA 2 cut(s) 392, 505
MflI RGATCY 2 cut(s) 142, 193
MhlI GDGCHC 2 cut(s) 223, 346
MluCI AATT 1 cut(s) 107
MlyI GAGTC 2 cut(s) 249, 458
MmeI TCCRAC 1 cut(s) 526
MnlI CCTC 4 cut(s) 27, 55, 515, 552
Mph1103I ATGCAT 1 cut(s) 117
MseI TTAA 1 cut(s) 27
MspI CCGG 3 cut(s) 139, 152, 383
MspR9I CCNGG 2 cut(s) 140, 546
MvaI CCWGG 1 cut(s) 546
MwoI GCNNNNNNNGC 1 cut(s) 494
NciI CCSGG 1 cut(s) 140
NdeI CATATG 2 cut(s) 296, 418
NdeII GATC 5 cut(s) 19, 142, 193, 312, 439
NlaIII CATG 3 cut(s) 115, 136, 613
NlaIV GGNNCC 5 cut(s) 345, 467, 468, 585, 628
NmuCI GTSAC 1 cut(s) 199
NsiI ATGCAT 1 cut(s) 117
NspV TTCGAA 1 cut(s) 473
PceI AGGCCT 2 cut(s) 102, 481
PfeI GAWTC 4 cut(s) 48, 157, 356, 428
PflMI CCANNNNNTGG 1 cut(s) 210
PkrI GCNGC 1 cut(s) 615
PleI GAGTC 2 cut(s) 248, 457
PpsI GAGTC 2 cut(s) 248, 457
PpuMI RGGWCCY 1 cut(s) 466
PshBI ATTAAT 1 cut(s) 27
Psp5II RGGWCCY 1 cut(s) 466
Psp6I CCWGG 1 cut(s) 544
PspEI GGTNACC 1 cut(s) 199
PspGI CCWGG 1 cut(s) 544
PspN4I GGNNCC 5 cut(s) 345, 467, 468, 585, 628
PspPI GGNCC 2 cut(s) 380, 466
PspPPI RGGWCCY 1 cut(s) 466
PsuI RGATCY 2 cut(s) 142, 193
RsaI GTAC 2 cut(s) 215, 278
RsaNI GTAC 2 cut(s) 214, 277
SaqAI TTAA 1 cut(s) 27
SatI GCNGC 1 cut(s) 614
Sau3AI GATC 5 cut(s) 19, 142, 193, 312, 439
Sau96I GGNCC 2 cut(s) 380, 466
SchI GAGTC 2 cut(s) 249, 458
ScrFI CCNGG 2 cut(s) 140, 546
SduI GDGCHC 2 cut(s) 223, 346
SetI ASST 5 cut(s) 93, 212, 271, 291, 499
SfaNI GCATC 4 cut(s) 124, 219, 357, 402
SfuI TTCGAA 1 cut(s) 473
SinI GGWCC 1 cut(s) 466
Sse9I AATT 1 cut(s) 107
SseBI AGGCCT 2 cut(s) 102, 481
SsiI CCGC 1 cut(s) 37
SspMI CTAG 1 cut(s) 483
StuI AGGCCT 2 cut(s) 102, 481
StyD4I CCNGG 2 cut(s) 138, 544
StyI CCWWGG 1 cut(s) 13
TaaI ACNGT 1 cut(s) 578
TaqI TCGA 6 cut(s) 238, 265, 403, 431, 438, 473
TasI AATT 1 cut(s) 107
TatI WGTACW 1 cut(s) 276
TfiI GAWTC 4 cut(s) 48, 157, 356, 428
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TscAI CASTG 1 cut(s) 430
TseFI GTSAC 1 cut(s) 199
TseI GCWGC 1 cut(s) 613
Tsp45I GTSAC 1 cut(s) 199
TspDTI ATGAA 2 cut(s) 100, 121
TspGWI ACGGA 1 cut(s) 376
TspRI CASTG 1 cut(s) 430
Van91I CCANNNNNTGG 1 cut(s) 210
VpaK11BI GGWCC 1 cut(s) 466
VspI ATTAAT 1 cut(s) 27
XapI RAATTY 1 cut(s) 107
XmiI GTMKAC 1 cut(s) 291
XspI CTAG 1 cut(s) 483
Zsp2I ATGCAT 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.