FvH4_2g16890
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000445
Physical Location & Seq
Forward (+)
14679105 .. 14680362
1258 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g16890.t1

Sequence Viewer

Length: 711 bp
ATGAAGTGCATCCTCCGTGGTTTCATTCGGCAAAGGGAGCTCAACGGAATGCCTTTCTCGGAAGCCGAAATCCGATCTATGGCCTTGCAAGTGTTTCAAGGACTAGACTTTATGCATCGCCAACGCGGTTACATGCACCGGGATTTAAAGCCCGAGAATCTGTTGGTGAACGAGCGAAAAGAGGTCAAGATCTCGGATTTGGGCAGTGCTATTGAGATAGACTCGAGGGGAAACATGTTCGACCATCACGTCACTACATTGTGCTATGAAGCCCCGGAGATGCTCCTTGAGACCTCCTATGATGAGAAGGTTGATATGTGGGCGGCGGGGTTGATCCTAGTCGACATGTTTCAAATGTTTCCTCTATACAGAGGTAACGATCAATTGTATATGATGCGCCAAGTCTTAGGAGCTCCGGATTGCAATTCAAAAATCGGAAGGATGGTTGCTGAAGCACTTGTAAACAAGCCTGAACGTGAGGAGGAGAAGGGTGGTGTTGGGTTTCGAGCAATTTTGCCAGATGCTAGTGAATCCGCGATTGATCTAATTCAGTCCCTTTGTTCTTGGGAGCCTTCCAAGAGGCCAAGTGCTGCAGAGGCACTTCGGCATCCGTTCTTCAAGAGTGCAAACAATGTTGCGGCTGCTCCTGCCTTCTCATGTTGTGCGGTTCCAAAGACGACAAGCTTATCATACATGCAGCCAATATGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

237

Amino Acids

26.68

Weight (kDa)

5.79

Isoelectric Point (pI)

52.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 6 - 118 5.4e-17 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 15 - 206 1.8e-41 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000445)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19110 AT4G19110 AT4G19110 AT5G45430 AT5G45430
fragaria_vesca FvH4_2g16890 FvH4_5g19220 FvH4_5g19340 FvH4_5g19350 FvH4_5g19360 FvH4_5g23910 FvH4_7g27810
malus_domestica MD00G1001400.v1.1 MD04G1058900.v1.1 MD04G1059300.v1.1 MD04G1059500.v1.1 MD04G1059600.v1.1 MD04G1059800.v1.1 MD04G1061700.v1.1 MD04G1061800.v1.1 MD06G1014800.v1.1 MD06G1052900.v1.1 MD06G1055500.v1.1
prunus_persica Prupe.5G021300_v2.0.a1 Prupe.5G065900_v2.0.a1 Prupe.5G066500_v2.0.a1
pyrus_communis pycom06g04440
rosa_chinensis RchiOBHm_Chr1g0374681 RchiOBHm_Chr2g0120471 RchiOBHm_Chr2g0120711 RchiOBHm_Chr7g0203821 RchiOBHm_Chr7g0203861 RchiOBHm_Chr7g0208401 RchiOBHm_Chr7g0209011 RchiOBHm_Chr7g0213341
rosa_laevigata RLG00000001348 RLG00000002813 RLG00000003173 RLG00000003212 RLG00000003503 RLG00000022835 RLG00000026723 RLG00000035532
rosa_multiflora Rmu_co7960007.1_g000001 Rmu_co7963796.1_g000001 Rmu_co8519951.1_g000002 Rmu_sc0002038.1_g000009 Rmu_sc0004947.1_g000015 Rmu_sc0007490.1_g000005 Rmu_sc0011180.1_g000003 Rmu_sc0015273.1_g000013 Rmu_ssc0000190.1_g000014 Rmu_ssc0000372.1_g000031
rosa_roxburghii Rroxscaffold_3G00246080 Rroxscaffold_3G00249860 Rroxscaffold_3G00249870 Rroxscaffold_3G00253500 Rroxscaffold_4G00283340
rosa_rugosa Rorug01G0384300 Rorug07G0079000 Rorug07G0079000 Rorug07G0079000 Rorug07G0108300 Rorug07G0141200
rosa_samantha Rh1AG395700 Rh1BG359900 Rh1DG006600 Rh1DG390900 Rh2AG287100 Rh3BG335800 Rh3CG321100 Rh5DG116800 Rh7AG273000 Rh7BG207600 Rh7BG207800 Rh7BG237700 Rh7BG268400 Rh7CG221100 Rh7CG221300 Rh7CG254000 Rh7CG257900 Rh7CG292200 Rh7DG215700 Rh7DG215900 Rh7DG244500 Rh7DG249800 Rh7DG280700
rosa_wichuraiana Rw0G010370 Rw1G035090 Rw2G023020 Rw7G018200 Rw7G020570 Rw7G023690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 248
AccI GTMKAC 1 cut(s) 342
AccII CGCG 2 cut(s) 126, 536
AccIII TCCGGA 1 cut(s) 415
AciI CCGC 6 cut(s) 126, 323, 326, 534, 638, 665
AclWI GGATC 1 cut(s) 328
AcuI CTGAAG 1 cut(s) 471
AfiI CCNNNNNNNGG 1 cut(s) 79
AflIII ACRYGT 2 cut(s) 234, 345
AgsI TTSAA 4 cut(s) 98, 353, 429, 619
AjiI CACGTC 1 cut(s) 250
AluBI AGCT 3 cut(s) 40, 413, 684
AluI AGCT 3 cut(s) 40, 413, 684
Alw21I GWGCWC 2 cut(s) 42, 415
Alw26I GTCTC 1 cut(s) 284
AlwI GGATC 1 cut(s) 328
Ama87I CYCGRG 2 cut(s) 152, 223
Aor13HI TCCGGA 1 cut(s) 415
AoxI GGCC 2 cut(s) 81, 581
ApeKI GCWGC 3 cut(s) 590, 641, 697
AspLEI GCGC 1 cut(s) 399
AsuC2I CCSGG 2 cut(s) 140, 275
AsuHPI GGTGA 1 cut(s) 178
AvaI CYCGRG 2 cut(s) 152, 223
BanII GRGCYC 2 cut(s) 42, 415
Bbv12I GWGCWC 2 cut(s) 42, 415
BbvI GCAGC 2 cut(s) 577, 628
BccI CCATC 2 cut(s) 252, 436
BcnI CCSGG 2 cut(s) 140, 275
BcoDI GTCTC 1 cut(s) 284
BfaI CTAG 4 cut(s) 104, 338, 525, 709
BfmI CTRYAG 1 cut(s) 591
BglII AGATCT 1 cut(s) 189
BisI GCNGC 5 cut(s) 324, 591, 639, 642, 698
BlsI GCNGC 5 cut(s) 325, 592, 640, 643, 699
Bme1390I CCNGG 2 cut(s) 140, 275
BmeT110I CYCGRG 2 cut(s) 152, 223
BmgBI CACGTC 1 cut(s) 250
BmiI GGNNCC 2 cut(s) 570, 669
BmrFI CCNGG 2 cut(s) 140, 275
BmsI GCATC 6 cut(s) 18, 124, 270, 384, 511, 616
BplI GAGNNNNNCTC 2 cut(s) 206, 238
BpuEI CTTGAG 1 cut(s) 308
BpuMI CCSGG 2 cut(s) 140, 275
BsaI GGTCTC 1 cut(s) 284
BsaJI CCNNGG 2 cut(s) 16, 273
BsaWI WCCGGW 1 cut(s) 415
Bsc4I CCNNNNNNNGG 1 cut(s) 79
BseAI TCCGGA 1 cut(s) 415
BseDI CCNNGG 2 cut(s) 16, 273
BseGI GGATG 3 cut(s) 9, 447, 607
BseLI CCNNNNNNNGG 1 cut(s) 79
BseRI GAGGAG 2 cut(s) 494, 497
BseXI GCAGC 2 cut(s) 577, 628
Bsh1236I CGCG 2 cut(s) 126, 536
BshFI GGCC 2 cut(s) 83, 583
BsiHKAI GWGCWC 2 cut(s) 42, 415
BsiHKCI CYCGRG 2 cut(s) 152, 223
BsiSI CCGG 3 cut(s) 139, 275, 416
BslFI GGGAC 1 cut(s) 538
BslI CCNNNNNNNGG 1 cut(s) 79
BsmAI GTCTC 1 cut(s) 284
BsmFI GGGAC 1 cut(s) 538
BsmI GAATGC 1 cut(s) 54
BsnI GGCC 2 cut(s) 83, 583
Bso31I GGTCTC 1 cut(s) 284
BsoBI CYCGRG 2 cut(s) 152, 223
Bsp1286I GDGCHC 2 cut(s) 42, 415
Bsp13I TCCGGA 1 cut(s) 415
Bsp143I GATC 5 cut(s) 74, 189, 333, 379, 541
BspACI CCGC 6 cut(s) 126, 323, 326, 534, 638, 665
BspANI GGCC 2 cut(s) 83, 583
BspEI TCCGGA 1 cut(s) 415
BspFNI CGCG 2 cut(s) 126, 536
BspLI GGNNCC 2 cut(s) 570, 669
BspMAI CTGCAG 1 cut(s) 595
BspPI GGATC 1 cut(s) 328
BspTNI GGTCTC 1 cut(s) 284
BssECI CCNNGG 2 cut(s) 16, 273
BssMI GATC 5 cut(s) 74, 189, 333, 379, 541
BstDEI CTNAG 1 cut(s) 406
BstDSI CCRYGG 1 cut(s) 16
BstF5I GGATG 3 cut(s) 9, 447, 607
BstFNI CGCG 2 cut(s) 126, 536
BstHHI GCGC 1 cut(s) 399
BstKTI GATC 5 cut(s) 77, 192, 336, 382, 544
BstMAI GTCTC 1 cut(s) 284
BstMBI GATC 5 cut(s) 74, 189, 333, 379, 541
BstMWI GCNNNNNNNGC 3 cut(s) 37, 596, 647
BstNSI RCATGY 4 cut(s) 136, 238, 349, 697
BstSCI CCNGG 2 cut(s) 138, 273
BstSFI CTRYAG 1 cut(s) 591
BstUI CGCG 2 cut(s) 126, 536
BstV1I GCAGC 2 cut(s) 577, 628
BstX2I RGATCY 1 cut(s) 189
BstYI RGATCY 1 cut(s) 189
BsuRI GGCC 2 cut(s) 83, 583
BtgI CCRYGG 1 cut(s) 16
BtgZI GCGATG 1 cut(s) 101
BtrI CACGTC 1 cut(s) 250
BtsCI GGATG 3 cut(s) 9, 447, 607
BtsI GCAGTG 1 cut(s) 211
BtsIMutI CAGTG 1 cut(s) 211
CfoI GCGC 1 cut(s) 399
CviAII CATG 5 cut(s) 133, 235, 346, 657, 694
DdeI CTNAG 1 cut(s) 406
DpnI GATC 5 cut(s) 76, 191, 335, 381, 543
DpnII GATC 5 cut(s) 74, 189, 333, 379, 541
DraI TTTAAA 1 cut(s) 147
DrdI GACNNNNNNGTC 1 cut(s) 248
DseDI GACNNNNNNGTC 1 cut(s) 248
Ecl136II GAGCTC 2 cut(s) 40, 413
Eco24I GRGCYC 2 cut(s) 42, 415
Eco31I GGTCTC 1 cut(s) 284
Eco53kI GAGCTC 2 cut(s) 40, 413
Eco57I CTGAAG 1 cut(s) 471
Eco88I CYCGRG 2 cut(s) 152, 223
EcoICRI GAGCTC 2 cut(s) 40, 413
EcoT22I ATGCAT 1 cut(s) 117
EcoT38I GRGCYC 2 cut(s) 42, 415
FaeI CATG 5 cut(s) 136, 238, 349, 660, 697
FaqI GGGAC 1 cut(s) 538
FatI CATG 5 cut(s) 132, 234, 345, 656, 693
FauI CCCGC 1 cut(s) 319
FblI GTMKAC 1 cut(s) 342
Fnu4HI GCNGC 5 cut(s) 324, 591, 639, 642, 698
FokI GGATG 2 cut(s) 454, 594
FriOI GRGCYC 2 cut(s) 42, 415
Fsp4HI GCNGC 5 cut(s) 324, 591, 639, 642, 698
FspBI CTAG 4 cut(s) 104, 338, 525, 709
GlaI GCGC 1 cut(s) 398
GluI GCNGC 5 cut(s) 324, 591, 639, 642, 698
HaeIII GGCC 2 cut(s) 83, 583
HapII CCGG 3 cut(s) 139, 275, 416
HhaI GCGC 1 cut(s) 399
Hin1II CATG 5 cut(s) 136, 238, 349, 660, 697
Hin6I GCGC 1 cut(s) 397
HinP1I GCGC 1 cut(s) 397
HincII GTYRAC 1 cut(s) 343
HindII GTYRAC 1 cut(s) 343
HindIII AAGCTT 1 cut(s) 682
HinfI GANTC 3 cut(s) 157, 221, 530
HpaII CCGG 3 cut(s) 139, 275, 416
HphI GGTGA 1 cut(s) 178
Hpy166II GTNNAC 3 cut(s) 169, 343, 463
Hpy188I TCNGA 4 cut(s) 61, 74, 196, 437
Hpy188III TCNNGA 3 cut(s) 187, 416, 619
Hpy8I GTNNAC 3 cut(s) 169, 343, 463
HpyAV CCTTC 5 cut(s) 301, 432, 481, 582, 661
HpyCH4IV ACGT 2 cut(s) 249, 475
HpyCH4V TGCA 8 cut(s) 9, 88, 115, 136, 423, 593, 626, 697
HpyF10VI GCNNNNNNNGC 3 cut(s) 37, 596, 647
HpyF3I CTNAG 1 cut(s) 406
HpySE526I ACGT 2 cut(s) 249, 475
Hsp92II CATG 5 cut(s) 136, 238, 349, 660, 697
HspAI GCGC 1 cut(s) 397
Kpn2I TCCGGA 1 cut(s) 415
Kzo9I GATC 5 cut(s) 74, 189, 333, 379, 541
LmnI GCTCC 6 cut(s) 37, 288, 410, 418, 568, 649
LpnPI CCDG 6 cut(s) 152, 288, 429, 483, 531, 660
Lsp1109I GCAGC 2 cut(s) 577, 628
LweI GCATC 6 cut(s) 18, 124, 270, 384, 511, 616
MaeI CTAG 4 cut(s) 104, 338, 525, 709
MaeII ACGT 2 cut(s) 249, 475
MaeIII GTNAC 3 cut(s) 128, 250, 374
MalI GATC 5 cut(s) 76, 191, 335, 381, 543
MboI GATC 5 cut(s) 74, 189, 333, 379, 541
MboII GAAGA 1 cut(s) 607
MfeI CAATTG 1 cut(s) 383
MflI RGATCY 1 cut(s) 189
MhlI GDGCHC 2 cut(s) 42, 415
MluCI AATT 4 cut(s) 383, 424, 510, 546
MlyI GAGTC 1 cut(s) 215
Mph1103I ATGCAT 1 cut(s) 117
MroI TCCGGA 1 cut(s) 415
MseI TTAA 1 cut(s) 146
MspI CCGG 3 cut(s) 139, 275, 416
MspR9I CCNGG 2 cut(s) 140, 275
MunI CAATTG 1 cut(s) 383
Mva1269I GAATGC 1 cut(s) 54
MvnI CGCG 2 cut(s) 126, 536
MwoI GCNNNNNNNGC 3 cut(s) 37, 596, 647
NciI CCSGG 2 cut(s) 140, 275
NdeII GATC 5 cut(s) 74, 189, 333, 379, 541
NlaIII CATG 5 cut(s) 136, 238, 349, 660, 697
NlaIV GGNNCC 2 cut(s) 570, 669
NmuCI GTSAC 1 cut(s) 250
NsiI ATGCAT 1 cut(s) 117
NspI RCATGY 4 cut(s) 136, 238, 349, 697
PaeR7I CTCGAG 1 cut(s) 223
PciI ACATGT 2 cut(s) 234, 345
PcsI WCGNNNNNNNCGW 1 cut(s) 246
PctI GAATGC 1 cut(s) 54
PfeI GAWTC 2 cut(s) 157, 530
PkrI GCNGC 5 cut(s) 325, 592, 640, 643, 699
PleI GAGTC 1 cut(s) 215
PpsI GAGTC 1 cut(s) 215
PscI ACATGT 2 cut(s) 234, 345
Psp124BI GAGCTC 2 cut(s) 42, 415
PspN4I GGNNCC 2 cut(s) 570, 669
PspXI VCTCGAGB 1 cut(s) 223
PstI CTGCAG 1 cut(s) 595
PsuI RGATCY 1 cut(s) 189
SacI GAGCTC 2 cut(s) 42, 415
SalI GTCGAC 1 cut(s) 341
SaqAI TTAA 1 cut(s) 146
SatI GCNGC 5 cut(s) 324, 591, 639, 642, 698
Sau3AI GATC 5 cut(s) 74, 189, 333, 379, 541
SchI GAGTC 1 cut(s) 215
ScrFI CCNGG 2 cut(s) 140, 275
SduI GDGCHC 2 cut(s) 42, 415
SetI ASST 9 cut(s) 42, 186, 252, 296, 312, 376, 415, 478, 686
SfaNI GCATC 6 cut(s) 18, 124, 270, 384, 511, 616
SfcI CTRYAG 1 cut(s) 591
Sfr274I CTCGAG 1 cut(s) 223
SlaI CTCGAG 1 cut(s) 223
SmlI CTYRAG 2 cut(s) 223, 287
SmoI CTYRAG 2 cut(s) 223, 287
Sse9I AATT 4 cut(s) 383, 424, 510, 546
SsiI CCGC 6 cut(s) 126, 323, 326, 534, 638, 665
SspMI CTAG 4 cut(s) 104, 338, 525, 709
SstI GAGCTC 2 cut(s) 42, 415
StyD4I CCNGG 2 cut(s) 138, 273
TaiI ACGT 2 cut(s) 252, 478
TaqI TCGA 4 cut(s) 224, 240, 342, 505
TasI AATT 4 cut(s) 383, 424, 510, 546
TauI GCSGC 2 cut(s) 326, 641
TfiI GAWTC 2 cut(s) 157, 530
Tru1I TTAA 1 cut(s) 146
Tru9I TTAA 1 cut(s) 146
TscAI CASTG 1 cut(s) 211
TseFI GTSAC 1 cut(s) 250
TseI GCWGC 3 cut(s) 590, 641, 697
Tsp45I GTSAC 1 cut(s) 250
TspDTI ATGAA 3 cut(s) 13, 17, 282
TspGWI ACGGA 3 cut(s) 5, 60, 600
TspRI CASTG 1 cut(s) 211
XceI RCATGY 4 cut(s) 136, 238, 349, 697
XhoI CTCGAG 1 cut(s) 223
XmiI GTMKAC 1 cut(s) 342
XspI CTAG 4 cut(s) 104, 338, 525, 709
Zsp2I ATGCAT 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.