RLG00000022835
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000445
Physical Location & Seq
Reverse (-)
13074111 .. 13075082
972 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022835

Sequence Viewer

Length: 972 bp
ATGGATAGATACGAGATAGTAAGGCTGGTTGGTGAGGGGAGTTTTGGGTGGGTGTATCAGGCCATCGACAACGACACCCATCAGTTTGTGGCGATCAAACGGCTGAAGCCAGACGGCGATCCGTGGGCATATGTACCGGAAATCCGTGCTCTCACTAGGTTGGAGCACCCCAATATAGTGAGCCTCAAGGGTGTTGAATACCAAGACGACGACGTCTTCTTTGTTTTTGAGTACATGGAGGGGAGCCTTGGTGATCTTATTGATGAGAGGCTAAGCAGGAGAATCCCTTTCTCGGAGGCCGAAATCCGATCACTGAGCCGTCAGGTGTTGCAAGGCCTTGAATTCATGCATCACCAACGCGGGTTCATGCACCGGGATCTGAAGCCGGAGAATCTTTTGGTGAACAAGGGCGTCATCAAGATTTCTGATCTGGGTACTGCTACGGAGATCGACTGCGGCGACCAAGTCCATCATCATCACGTCACCACAAGGTGGTACAGAGCCCCGGAGATGCTGTTTCGAGCCTTCGTGAAAAACGAGGGGCTTCGACCTTTTGAGTATGATGAGAAAGTGGACATGTGGGCGATGGGGACAATCATAGCAGAGCTGTTTCTCATGCGGCCTCTCTTCGAGGGTGATGATTCGCCGGATCAGCTGTACAAGATATGCGAAGTCATAGGGGCTCCAACTAGGGATTCACGGACGATGCCTAAACTTGGGCCGGAGAATGGTGTGGGTCTTCGAGCATTGATGCCAAATGCCAGTGAATCGGCCATCGATCTCATAGAGTCTCTTTGTTCTTGGGACCCTTCGAAAAGGCCTAGTGCTAAGGAAGCTCTCCAGCATCCCTTCTTCAAGAGAGGGCAGAATGTTGACGCTCCTCCTGGGTTCTCATATTGCACTTATACAAGGAACAGTGTGGTTCCAAAGATGAGAGAGTTATCAACCATGCAGCCAATACTGGGAGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

324

Amino Acids

37.02

Weight (kDa)

5.53

Isoelectric Point (pI)

44.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 4 - 285 8.6e-66 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 6 - 205 9.5e-29 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000445)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19110 AT4G19110 AT4G19110 AT5G45430 AT5G45430
fragaria_vesca FvH4_2g16890 FvH4_5g19220 FvH4_5g19340 FvH4_5g19350 FvH4_5g19360 FvH4_5g23910 FvH4_7g27810
malus_domestica MD00G1001400.v1.1 MD04G1058900.v1.1 MD04G1059300.v1.1 MD04G1059500.v1.1 MD04G1059600.v1.1 MD04G1059800.v1.1 MD04G1061700.v1.1 MD04G1061800.v1.1 MD06G1014800.v1.1 MD06G1052900.v1.1 MD06G1055500.v1.1
prunus_persica Prupe.5G021300_v2.0.a1 Prupe.5G065900_v2.0.a1 Prupe.5G066500_v2.0.a1
pyrus_communis pycom06g04440
rosa_chinensis RchiOBHm_Chr1g0374681 RchiOBHm_Chr2g0120471 RchiOBHm_Chr2g0120711 RchiOBHm_Chr7g0203821 RchiOBHm_Chr7g0203861 RchiOBHm_Chr7g0208401 RchiOBHm_Chr7g0209011 RchiOBHm_Chr7g0213341
rosa_laevigata RLG00000001348 RLG00000002813 RLG00000003173 RLG00000003212 RLG00000003503 RLG00000022835 RLG00000026723 RLG00000035532
rosa_multiflora Rmu_co7960007.1_g000001 Rmu_co7963796.1_g000001 Rmu_co8519951.1_g000002 Rmu_sc0002038.1_g000009 Rmu_sc0004947.1_g000015 Rmu_sc0007490.1_g000005 Rmu_sc0011180.1_g000003 Rmu_sc0015273.1_g000013 Rmu_ssc0000190.1_g000014 Rmu_ssc0000372.1_g000031
rosa_roxburghii Rroxscaffold_3G00246080 Rroxscaffold_3G00249860 Rroxscaffold_3G00249870 Rroxscaffold_3G00253500 Rroxscaffold_4G00283340
rosa_rugosa Rorug01G0384300 Rorug07G0079000 Rorug07G0079000 Rorug07G0079000 Rorug07G0108300 Rorug07G0141200
rosa_samantha Rh1AG395700 Rh1BG359900 Rh1DG006600 Rh1DG390900 Rh2AG287100 Rh3BG335800 Rh3CG321100 Rh5DG116800 Rh7AG273000 Rh7BG207600 Rh7BG207800 Rh7BG237700 Rh7BG268400 Rh7CG221100 Rh7CG221300 Rh7CG254000 Rh7CG257900 Rh7CG292200 Rh7DG215700 Rh7DG215900 Rh7DG244500 Rh7DG249800 Rh7DG280700
rosa_wichuraiana Rw0G010370 Rw1G035090 Rw2G023020 Rw7G018200 Rw7G020570 Rw7G023690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 212
AatII GACGTC 1 cut(s) 216
AccB7I CCANNNNNTGG 1 cut(s) 492
AccII CGCG 1 cut(s) 360
AciI CCGC 3 cut(s) 360, 456, 619
AclWI GGATC 3 cut(s) 113, 384, 657
AcoI YGGCCR 1 cut(s) 771
AcsI RAATTY 1 cut(s) 341
AcuI CTGAAG 2 cut(s) 125, 401
AcyI GRCGYC 2 cut(s) 213, 411
AdeI CACNNNGTG 1 cut(s) 492
AfaI GTAC 5 cut(s) 135, 233, 436, 497, 659
AfiI CCNNNNNNNGG 5 cut(s) 292, 492, 716, 728, 962
AflIII ACRYGT 1 cut(s) 576
AgsI TTSAA 3 cut(s) 197, 341, 856
AjiI CACGTC 1 cut(s) 481
AjnI CCWGG 1 cut(s) 883
AjuI GAANNNNNNNTTGG 2 cut(s) 679, 711
AluBI AGCT 3 cut(s) 607, 655, 836
AluI AGCT 3 cut(s) 607, 655, 836
Alw21I GWGCWC 2 cut(s) 151, 168
Alw26I GTCTC 1 cut(s) 795
AlwI GGATC 3 cut(s) 113, 384, 657
AoxI GGCC 7 cut(s) 60, 297, 334, 620, 719, 771, 818
ApeKI GCWGC 1 cut(s) 952
ApoI RAATTY 1 cut(s) 341
ArsI GACNNNNNNTTYG 2 cut(s) 203, 235
AspS9I GGNCC 2 cut(s) 719, 805
AsuC2I CCSGG 2 cut(s) 374, 506
AsuHPI GGTGA 6 cut(s) 44, 263, 344, 412, 475, 647
AsuII TTCGAA 1 cut(s) 812
AvaII GGWCC 1 cut(s) 805
BanII GRGCYC 2 cut(s) 505, 685
BbsI GAAGAC 2 cut(s) 208, 731
Bbv12I GWGCWC 2 cut(s) 151, 168
BbvI GCAGC 1 cut(s) 964
BccI CCATC 5 cut(s) 71, 87, 477, 580, 782
BceAI ACGGC 3 cut(s) 116, 130, 303
BciT130I CCWGG 1 cut(s) 885
BcnI CCSGG 2 cut(s) 374, 506
BcoDI GTCTC 1 cut(s) 795
BfaI CTAG 3 cut(s) 156, 690, 822
BisI GCNGC 3 cut(s) 457, 620, 953
BlpI GCTNAGC 1 cut(s) 272
BlsI GCNGC 3 cut(s) 458, 621, 954
Bme1390I CCNGG 3 cut(s) 374, 506, 885
Bme18I GGWCC 1 cut(s) 805
BmgBI CACGTC 1 cut(s) 481
BmgT120I GGNCC 2 cut(s) 719, 805
BmiI GGNNCC 5 cut(s) 245, 684, 806, 807, 924
BmrFI CCNGG 3 cut(s) 374, 506, 885
BmrI ACTGGG 1 cut(s) 971
BmsI GCATC 5 cut(s) 358, 501, 696, 741, 853
BmuI ACTGGG 1 cut(s) 971
BpiI GAAGAC 2 cut(s) 208, 731
BpmI CTGGAG 1 cut(s) 824
Bpu10I CCTNAGC 1 cut(s) 828
Bpu1102I GCTNAGC 1 cut(s) 272
Bpu14I TTCGAA 1 cut(s) 812
BpuEI CTTGAG 1 cut(s) 170
BpuMI CCSGG 2 cut(s) 374, 506
Bsa29I ATCGAT 1 cut(s) 777
BsaHI GRCGYC 2 cut(s) 213, 411
BsaJI CCNNGG 4 cut(s) 122, 247, 504, 884
BsaWI WCCGGW 1 cut(s) 136
BsaXI ACNNNNNCTCC 4 cut(s) 235, 265, 500, 530
Bsc4I CCNNNNNNNGG 5 cut(s) 292, 492, 716, 728, 962
Bse1I ACTGG 2 cut(s) 762, 966
BseBI CCWGG 1 cut(s) 885
BseCI ATCGAT 1 cut(s) 777
BseDI CCNNGG 4 cut(s) 122, 247, 504, 884
BseGI GGATG 1 cut(s) 844
BseLI CCNNNNNNNGG 5 cut(s) 292, 492, 716, 728, 962
BseMII CTCAG 1 cut(s) 305
BseNI ACTGG 2 cut(s) 762, 966
BseRI GAGGAG 1 cut(s) 870
BseXI GCAGC 1 cut(s) 964
Bsh1236I CGCG 1 cut(s) 360
BshFI GGCC 7 cut(s) 62, 299, 336, 622, 721, 773, 820
BshVI ATCGAT 1 cut(s) 777
BsiHKAI GWGCWC 2 cut(s) 151, 168
BsiSI CCGG 6 cut(s) 137, 373, 386, 506, 647, 722
BslFI GGGAC 2 cut(s) 604, 818
BslI CCNNNNNNNGG 5 cut(s) 292, 492, 716, 728, 962
BsmAI GTCTC 1 cut(s) 795
BsmFI GGGAC 2 cut(s) 604, 818
BsnI GGCC 7 cut(s) 62, 299, 336, 622, 721, 773, 820
Bsp119I TTCGAA 1 cut(s) 812
Bsp1286I GDGCHC 4 cut(s) 151, 168, 505, 685
Bsp1407I TGTACA 1 cut(s) 657
Bsp143I GATC 9 cut(s) 93, 118, 253, 308, 376, 427, 447, 649, 778
Bsp1720I GCTNAGC 1 cut(s) 272
BspACI CCGC 3 cut(s) 360, 456, 619
BspANI GGCC 7 cut(s) 62, 299, 336, 622, 721, 773, 820
BspCNI CTCAG 1 cut(s) 306
BspDI ATCGAT 1 cut(s) 777
BspFNI CGCG 1 cut(s) 360
BspLI GGNNCC 5 cut(s) 245, 684, 806, 807, 924
BspPI GGATC 3 cut(s) 113, 384, 657
BspT104I TTCGAA 1 cut(s) 812
BsrGI TGTACA 1 cut(s) 657
BsrI ACTGG 2 cut(s) 762, 966
BssECI CCNNGG 4 cut(s) 122, 247, 504, 884
BssMI GATC 9 cut(s) 93, 118, 253, 308, 376, 427, 447, 649, 778
BssNI GRCGYC 2 cut(s) 213, 411
BssT1I CCWWGG 1 cut(s) 247
Bst2UI CCWGG 1 cut(s) 885
Bst4CI ACNGT 1 cut(s) 917
Bst6I CTCTTC 1 cut(s) 632
BstACI GRCGYC 2 cut(s) 213, 411
BstAUI TGTACA 1 cut(s) 657
BstBI TTCGAA 1 cut(s) 812
BstDEI CTNAG 3 cut(s) 272, 314, 828
BstDSI CCRYGG 1 cut(s) 122
BstF5I GGATG 1 cut(s) 844
BstFNI CGCG 1 cut(s) 360
BstKTI GATC 9 cut(s) 96, 121, 256, 311, 379, 430, 450, 652, 781
BstMAI GTCTC 1 cut(s) 795
BstMBI GATC 9 cut(s) 93, 118, 253, 308, 376, 427, 447, 649, 778
BstMWI GCNNNNNNNGC 2 cut(s) 652, 833
BstNI CCWGG 1 cut(s) 885
BstNSI RCATGY 1 cut(s) 580
BstSCI CCNGG 3 cut(s) 372, 504, 883
BstUI CGCG 1 cut(s) 360
BstV1I GCAGC 1 cut(s) 964
BstV2I GAAGAC 2 cut(s) 208, 731
BstX2I RGATCY 1 cut(s) 376
BstYI RGATCY 1 cut(s) 376
Bsu15I ATCGAT 1 cut(s) 777
BsuRI GGCC 7 cut(s) 62, 299, 336, 622, 721, 773, 820
BsuTUI ATCGAT 1 cut(s) 777
BtgI CCRYGG 1 cut(s) 122
BtgZI GCGATG 1 cut(s) 599
BtrI CACGTC 1 cut(s) 481
BtsCI GGATG 1 cut(s) 844
BtsIMutI CAGTG 3 cut(s) 311, 769, 922
Cfr13I GGNCC 2 cut(s) 719, 805
ClaI ATCGAT 1 cut(s) 777
CseI GACGC 2 cut(s) 400, 884
Csp6I GTAC 5 cut(s) 134, 232, 435, 496, 658
CviAII CATG 6 cut(s) 235, 346, 367, 577, 616, 949
CviQI GTAC 5 cut(s) 134, 232, 435, 496, 658
DdeI CTNAG 3 cut(s) 272, 314, 828
DpnI GATC 9 cut(s) 95, 120, 255, 310, 378, 429, 449, 651, 780
DpnII GATC 9 cut(s) 93, 118, 253, 308, 376, 427, 447, 649, 778
DraIII CACNNNGTG 1 cut(s) 492
DrdI GACNNNNNNGTC 1 cut(s) 212
DseDI GACNNNNNNGTC 1 cut(s) 212
EaeI YGGCCR 1 cut(s) 771
Eam1104I CTCTTC 1 cut(s) 632
EarI CTCTTC 1 cut(s) 632
Eco130I CCWWGG 1 cut(s) 247
Eco147I AGGCCT 2 cut(s) 336, 820
Eco24I GRGCYC 2 cut(s) 505, 685
Eco47I GGWCC 1 cut(s) 805
Eco57I CTGAAG 2 cut(s) 125, 401
EcoO109I RGGNCCY 1 cut(s) 805
EcoRI GAATTC 1 cut(s) 341
EcoRII CCWGG 1 cut(s) 883
EcoT14I CCWWGG 1 cut(s) 247
EcoT22I ATGCAT 1 cut(s) 351
EcoT38I GRGCYC 2 cut(s) 505, 685
ErhI CCWWGG 1 cut(s) 247
FaeI CATG 6 cut(s) 238, 349, 370, 580, 619, 952
FaqI GGGAC 2 cut(s) 604, 818
FatI CATG 6 cut(s) 234, 345, 366, 576, 615, 948
FauI CCCGC 1 cut(s) 353
FauNDI CATATG 1 cut(s) 130
Fnu4HI GCNGC 3 cut(s) 457, 620, 953
FokI GGATG 1 cut(s) 831
FriOI GRGCYC 2 cut(s) 505, 685
Fsp4HI GCNGC 3 cut(s) 457, 620, 953
FspBI CTAG 3 cut(s) 156, 690, 822
GluI GCNGC 3 cut(s) 457, 620, 953
GsuI CTGGAG 1 cut(s) 824
HaeIII GGCC 7 cut(s) 62, 299, 336, 622, 721, 773, 820
HapII CCGG 6 cut(s) 137, 373, 386, 506, 647, 722
HgaI GACGC 2 cut(s) 400, 884
Hin1I GRCGYC 2 cut(s) 213, 411
Hin1II CATG 6 cut(s) 238, 349, 370, 580, 619, 952
HincII GTYRAC 1 cut(s) 874
HindII GTYRAC 1 cut(s) 874
HinfI GANTC 7 cut(s) 282, 391, 641, 695, 767, 788, 966
HpaII CCGG 6 cut(s) 137, 373, 386, 506, 647, 722
HphI GGTGA 6 cut(s) 44, 263, 344, 412, 475, 647
Hpy166II GTNNAC 3 cut(s) 403, 574, 874
Hpy188I TCNGA 4 cut(s) 295, 308, 381, 427
Hpy188III TCNNGA 3 cut(s) 418, 529, 856
Hpy8I GTNNAC 3 cut(s) 403, 574, 874
Hpy99I CGWCG 2 cut(s) 212, 215
HpyAV CCTTC 3 cut(s) 535, 819, 859
HpyCH4III ACNGT 1 cut(s) 917
HpyCH4IV ACGT 2 cut(s) 213, 480
HpyCH4V TGCA 5 cut(s) 331, 349, 370, 900, 952
HpyF10VI GCNNNNNNNGC 2 cut(s) 652, 833
HpyF3I CTNAG 3 cut(s) 272, 314, 828
HpySE526I ACGT 2 cut(s) 213, 480
Hsp92I GRCGYC 2 cut(s) 213, 411
Hsp92II CATG 6 cut(s) 238, 349, 370, 580, 619, 952
KflI GGGWCCC 1 cut(s) 805
Kzo9I GATC 9 cut(s) 93, 118, 253, 308, 376, 427, 447, 649, 778
LmnI GCTCC 4 cut(s) 163, 243, 688, 883
Lsp1109I GCAGC 1 cut(s) 964
LweI GCATC 5 cut(s) 358, 501, 696, 741, 853
MaeI CTAG 3 cut(s) 156, 690, 822
MaeII ACGT 2 cut(s) 213, 480
MaeIII GTNAC 1 cut(s) 481
MalI GATC 9 cut(s) 95, 120, 255, 310, 378, 429, 449, 651, 780
MboI GATC 9 cut(s) 93, 118, 253, 308, 376, 427, 447, 649, 778
MboII GAAGA 4 cut(s) 208, 619, 731, 844
MflI RGATCY 1 cut(s) 376
MhlI GDGCHC 4 cut(s) 151, 168, 505, 685
MluCI AATT 1 cut(s) 341
MlyI GAGTC 1 cut(s) 797
MmeI TCCRAC 2 cut(s) 141, 710
Mph1103I ATGCAT 1 cut(s) 351
MspA1I CMGCKG 1 cut(s) 655
MspI CCGG 6 cut(s) 137, 373, 386, 506, 647, 722
MspR9I CCNGG 3 cut(s) 374, 506, 885
MvaI CCWGG 1 cut(s) 885
MvnI CGCG 1 cut(s) 360
MwoI GCNNNNNNNGC 2 cut(s) 652, 833
NciI CCSGG 2 cut(s) 374, 506
NdeI CATATG 1 cut(s) 130
NdeII GATC 9 cut(s) 93, 118, 253, 308, 376, 427, 447, 649, 778
NlaIII CATG 6 cut(s) 238, 349, 370, 580, 619, 952
NlaIV GGNNCC 5 cut(s) 245, 684, 806, 807, 924
NmuCI GTSAC 1 cut(s) 481
NsiI ATGCAT 1 cut(s) 351
NspI RCATGY 1 cut(s) 580
NspV TTCGAA 1 cut(s) 812
PceI AGGCCT 2 cut(s) 336, 820
PciI ACATGT 1 cut(s) 576
PcsI WCGNNNNNNNCGW 2 cut(s) 456, 534
PfeI GAWTC 5 cut(s) 282, 391, 641, 695, 767
PflFI GACNNNGTC 2 cut(s) 212, 464
PflMI CCANNNNNTGG 1 cut(s) 492
PkrI GCNGC 3 cut(s) 458, 621, 954
PleI GAGTC 1 cut(s) 796
PpsI GAGTC 1 cut(s) 796
PpuMI RGGWCCY 1 cut(s) 805
PscI ACATGT 1 cut(s) 576
Psp5II RGGWCCY 1 cut(s) 805
Psp6I CCWGG 1 cut(s) 883
PspGI CCWGG 1 cut(s) 883
PspN4I GGNNCC 5 cut(s) 245, 684, 806, 807, 924
PspPI GGNCC 2 cut(s) 719, 805
PspPPI RGGWCCY 1 cut(s) 805
PsuI RGATCY 1 cut(s) 376
PsyI GACNNNGTC 2 cut(s) 212, 464
PvuII CAGCTG 1 cut(s) 655
RsaI GTAC 5 cut(s) 135, 233, 436, 497, 659
RsaNI GTAC 5 cut(s) 134, 232, 435, 496, 658
SatI GCNGC 3 cut(s) 457, 620, 953
Sau3AI GATC 9 cut(s) 93, 118, 253, 308, 376, 427, 447, 649, 778
Sau96I GGNCC 2 cut(s) 719, 805
SchI GAGTC 1 cut(s) 797
ScrFI CCNGG 3 cut(s) 374, 506, 885
SduI GDGCHC 4 cut(s) 151, 168, 505, 685
SetI ASST 9 cut(s) 161, 216, 327, 483, 494, 553, 609, 657, 838
SfaNI GCATC 5 cut(s) 358, 501, 696, 741, 853
SfuI TTCGAA 1 cut(s) 812
SinI GGWCC 1 cut(s) 805
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
Sse9I AATT 1 cut(s) 341
SseBI AGGCCT 2 cut(s) 336, 820
SsiI CCGC 3 cut(s) 360, 456, 619
SspMI CTAG 3 cut(s) 156, 690, 822
StuI AGGCCT 2 cut(s) 336, 820
StyD4I CCNGG 3 cut(s) 372, 504, 883
StyI CCWWGG 1 cut(s) 247
TaaI ACNGT 1 cut(s) 917
TaiI ACGT 2 cut(s) 216, 483
TaqI TCGA 8 cut(s) 66, 450, 520, 547, 630, 742, 777, 812
TasI AATT 1 cut(s) 341
TatI WGTACW 2 cut(s) 231, 657
TauI GCSGC 2 cut(s) 459, 622
TfiI GAWTC 5 cut(s) 282, 391, 641, 695, 767
TscAI CASTG 3 cut(s) 318, 769, 922
TseFI GTSAC 1 cut(s) 481
TseI GCWGC 1 cut(s) 952
Tsp45I GTSAC 1 cut(s) 481
TspDTI ATGAA 2 cut(s) 334, 355
TspGWI ACGGA 4 cut(s) 111, 134, 458, 715
TspRI CASTG 3 cut(s) 318, 769, 922
Tth111I GACNNNGTC 2 cut(s) 212, 464
Van91I CCANNNNNTGG 1 cut(s) 492
VpaK11BI GGWCC 1 cut(s) 805
XapI RAATTY 1 cut(s) 341
XceI RCATGY 1 cut(s) 580
XspI CTAG 3 cut(s) 156, 690, 822
ZraI GACGTC 1 cut(s) 214
Zsp2I ATGCAT 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.