RchiOBHm_Chr2g0120471
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000445
Physical Location & Seq
Forward (+)
33157436 .. 33158284
849 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49308

Sequence Viewer

Length: 849 bp
ATGTACCGGAAGTCCGTGCTCTCACTAGGTTGCAGCACCCCCAATATAGTGAGCTTCAAGGGTGTTGAATACCAAGACGACGACGTCTTCTTTATTTTTGAGTACATGGAGGGTAGCCTTGGTGATCTTATTGATGAGAGGCGGAGCAGGAGAATCCCTTTCTCGGAGGCCGAAATCCGATCATTGGGCCGTCAGGTGTTGCAAGGCCTTGAATTCATGCATCACCAACGCGGGTTCATGCACCGGGATCTGAAGCCGGAGAATCTTTTGGTGAACAAGGGCGACATCAAGATTTCGGATCTGGGTACTGCTACGGACATCGACTGCGGCGGCCAAGCCCATCATCATTACGTCACCACAAGGTGGTACAGAGCCCCCGAGATGCTGTTTCGGGCCTTTGTGAAAAACGAGAGCCTTCGACCTTTTGAGTACGATGAGAAGGTAGATATATGGGCGATGGGGACGATCATCGCAGAACTGTTTCTGATGCACCCTCTCTTCCAGGGTGACGATTCGCCGGACCAGCTCTACAGGATATGCGAAGTCATCGGCGCTCCAAGTAGGGATTCACGGACGATGCCTAAACTTGGGCCGGAGAATGGTGTGGGTCTTCGAGCATTGATGCCATATGCCAGTGAATCGGCCATCGATCTCATAGAGTCTCTTTGTTCTTGGGACCCTTTGAAAAGGCCTAGTGCTAAGGAAGCTCTCCAGCATCCCTTCTTCAAGAGAGGGCAGAATGTTGACGCTCCTCCTGGGTTCGGCTCATATTGCACTCATACAAGGAACAGTGTGGTTCCGAAGATGAGAGAGTTATCAACCATGCAGCCAATACTGGGAGCCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

282

Amino Acids

32.14

Weight (kDa)

6.0

Isoelectric Point (pI)

56.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 11 - 242 6.3e-51 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 12 - 162 5e-19 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000445)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19110 AT4G19110 AT4G19110 AT5G45430 AT5G45430
fragaria_vesca FvH4_2g16890 FvH4_5g19220 FvH4_5g19340 FvH4_5g19350 FvH4_5g19360 FvH4_5g23910 FvH4_7g27810
malus_domestica MD00G1001400.v1.1 MD04G1058900.v1.1 MD04G1059300.v1.1 MD04G1059500.v1.1 MD04G1059600.v1.1 MD04G1059800.v1.1 MD04G1061700.v1.1 MD04G1061800.v1.1 MD06G1014800.v1.1 MD06G1052900.v1.1 MD06G1055500.v1.1
prunus_persica Prupe.5G021300_v2.0.a1 Prupe.5G065900_v2.0.a1 Prupe.5G066500_v2.0.a1
pyrus_communis pycom06g04440
rosa_chinensis RchiOBHm_Chr1g0374681 RchiOBHm_Chr2g0120471 RchiOBHm_Chr2g0120711 RchiOBHm_Chr7g0203821 RchiOBHm_Chr7g0203861 RchiOBHm_Chr7g0208401 RchiOBHm_Chr7g0209011 RchiOBHm_Chr7g0213341
rosa_laevigata RLG00000001348 RLG00000002813 RLG00000003173 RLG00000003212 RLG00000003503 RLG00000022835 RLG00000026723 RLG00000035532
rosa_multiflora Rmu_co7960007.1_g000001 Rmu_co7963796.1_g000001 Rmu_co8519951.1_g000002 Rmu_sc0002038.1_g000009 Rmu_sc0004947.1_g000015 Rmu_sc0007490.1_g000005 Rmu_sc0011180.1_g000003 Rmu_sc0015273.1_g000013 Rmu_ssc0000190.1_g000014 Rmu_ssc0000372.1_g000031
rosa_roxburghii Rroxscaffold_3G00246080 Rroxscaffold_3G00249860 Rroxscaffold_3G00249870 Rroxscaffold_3G00253500 Rroxscaffold_4G00283340
rosa_rugosa Rorug01G0384300 Rorug07G0079000 Rorug07G0079000 Rorug07G0079000 Rorug07G0108300 Rorug07G0141200
rosa_samantha Rh1AG395700 Rh1BG359900 Rh1DG006600 Rh1DG390900 Rh2AG287100 Rh3BG335800 Rh3CG321100 Rh5DG116800 Rh7AG273000 Rh7BG207600 Rh7BG207800 Rh7BG237700 Rh7BG268400 Rh7CG221100 Rh7CG221300 Rh7CG254000 Rh7CG257900 Rh7CG292200 Rh7DG215700 Rh7DG215900 Rh7DG244500 Rh7DG249800 Rh7DG280700
rosa_wichuraiana Rw0G010370 Rw1G035090 Rw2G023020 Rw7G018200 Rw7G020570 Rw7G023690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 83
AatII GACGTC 1 cut(s) 87
AccB7I CCANNNNNTGG 1 cut(s) 363
AccII CGCG 1 cut(s) 231
AciI CCGC 4 cut(s) 142, 231, 327, 330
AclWI GGATC 2 cut(s) 255, 306
AcoI YGGCCR 2 cut(s) 331, 642
AcsI RAATTY 1 cut(s) 212
AcuI CTGAAG 1 cut(s) 272
AcyI GRCGYC 1 cut(s) 84
AdeI CACNNNGTG 1 cut(s) 363
AfaI GTAC 5 cut(s) 5, 104, 307, 368, 431
AfiI CCNNNNNNNGG 7 cut(s) 163, 184, 363, 587, 599, 761, 836
AgsI TTSAA 5 cut(s) 58, 68, 212, 685, 727
AjnI CCWGG 2 cut(s) 501, 754
AjuI GAANNNNNNNTTGG 2 cut(s) 550, 582
AluBI AGCT 3 cut(s) 54, 526, 707
AluI AGCT 3 cut(s) 54, 526, 707
Alw21I GWGCWC 1 cut(s) 21
Alw26I GTCTC 1 cut(s) 666
AlwI GGATC 2 cut(s) 255, 306
Ama87I CYCGRG 1 cut(s) 377
AoxI GGCC 8 cut(s) 168, 187, 205, 331, 393, 590, 642, 689
ApeKI GCWGC 2 cut(s) 33, 826
ApoI RAATTY 1 cut(s) 212
Asp700I GAANNNNTTC 1 cut(s) 480
AspLEI GCGC 1 cut(s) 554
AspS9I GGNCC 5 cut(s) 187, 393, 520, 590, 676
AsuC2I CCSGG 1 cut(s) 245
AsuHPI GGTGA 5 cut(s) 134, 215, 283, 346, 518
AvaI CYCGRG 1 cut(s) 377
AvaII GGWCC 2 cut(s) 520, 676
BanII GRGCYC 1 cut(s) 376
BbsI GAAGAC 2 cut(s) 79, 602
Bbv12I GWGCWC 1 cut(s) 21
BbvI GCAGC 2 cut(s) 45, 838
BccI CCATC 3 cut(s) 348, 451, 653
BceAI ACGGC 1 cut(s) 174
BciT130I CCWGG 2 cut(s) 503, 756
BcnI CCSGG 1 cut(s) 245
BcoDI GTCTC 1 cut(s) 666
BfaI CTAG 2 cut(s) 26, 693
BfmI CTRYAG 1 cut(s) 529
BfoI RGCGCY 1 cut(s) 555
BisI GCNGC 4 cut(s) 34, 328, 331, 827
BlsI GCNGC 4 cut(s) 35, 329, 332, 828
Bme1390I CCNGG 3 cut(s) 245, 503, 756
Bme18I GGWCC 2 cut(s) 520, 676
BmeT110I CYCGRG 1 cut(s) 377
BmgT120I GGNCC 5 cut(s) 187, 393, 520, 590, 676
BmiI GGNNCC 4 cut(s) 677, 678, 798, 841
BmrFI CCNGG 3 cut(s) 245, 503, 756
BmrI ACTGGG 1 cut(s) 845
BmsI GCATC 6 cut(s) 229, 372, 477, 567, 612, 724
BmuI ACTGGG 1 cut(s) 845
BpiI GAAGAC 2 cut(s) 79, 602
BpmI CTGGAG 1 cut(s) 695
Bpu10I CCTNAGC 1 cut(s) 699
BpuMI CCSGG 1 cut(s) 245
Bsa29I ATCGAT 1 cut(s) 648
BsaHI GRCGYC 1 cut(s) 84
BsaJI CCNNGG 3 cut(s) 118, 502, 755
BsaWI WCCGGW 1 cut(s) 6
Bsc4I CCNNNNNNNGG 7 cut(s) 163, 184, 363, 587, 599, 761, 836
Bse1I ACTGG 2 cut(s) 633, 840
BseBI CCWGG 2 cut(s) 503, 756
BseCI ATCGAT 1 cut(s) 648
BseDI CCNNGG 3 cut(s) 118, 502, 755
BseGI GGATG 1 cut(s) 715
BseLI CCNNNNNNNGG 7 cut(s) 163, 184, 363, 587, 599, 761, 836
BseNI ACTGG 2 cut(s) 633, 840
BseRI GAGGAG 1 cut(s) 741
BseXI GCAGC 2 cut(s) 45, 838
Bsh1236I CGCG 1 cut(s) 231
BshFI GGCC 8 cut(s) 170, 189, 207, 333, 395, 592, 644, 691
BshVI ATCGAT 1 cut(s) 648
BsiHKAI GWGCWC 1 cut(s) 21
BsiHKCI CYCGRG 1 cut(s) 377
BsiSI CCGG 5 cut(s) 7, 244, 257, 518, 593
BslFI GGGAC 2 cut(s) 475, 689
BslI CCNNNNNNNGG 7 cut(s) 163, 184, 363, 587, 599, 761, 836
BsmAI GTCTC 1 cut(s) 666
BsmFI GGGAC 2 cut(s) 475, 689
BsnI GGCC 8 cut(s) 170, 189, 207, 333, 395, 592, 644, 691
BsoBI CYCGRG 1 cut(s) 377
Bsp1286I GDGCHC 2 cut(s) 21, 376
Bsp143I GATC 6 cut(s) 124, 179, 247, 298, 465, 649
BspACI CCGC 4 cut(s) 142, 231, 327, 330
BspANI GGCC 8 cut(s) 170, 189, 207, 333, 395, 592, 644, 691
BspDI ATCGAT 1 cut(s) 648
BspFNI CGCG 1 cut(s) 231
BspLI GGNNCC 4 cut(s) 677, 678, 798, 841
BspPI GGATC 2 cut(s) 255, 306
BsrI ACTGG 2 cut(s) 633, 840
BssECI CCNNGG 3 cut(s) 118, 502, 755
BssMI GATC 6 cut(s) 124, 179, 247, 298, 465, 649
BssNI GRCGYC 1 cut(s) 84
BssT1I CCWWGG 1 cut(s) 118
Bst2UI CCWGG 2 cut(s) 503, 756
Bst4CI ACNGT 2 cut(s) 480, 791
Bst6I CTCTTC 1 cut(s) 503
BstACI GRCGYC 1 cut(s) 84
BstDEI CTNAG 1 cut(s) 699
BstF5I GGATG 1 cut(s) 715
BstFNI CGCG 1 cut(s) 231
BstH2I RGCGCY 1 cut(s) 555
BstHHI GCGC 1 cut(s) 554
BstKTI GATC 6 cut(s) 127, 182, 250, 301, 468, 652
BstMAI GTCTC 1 cut(s) 666
BstMBI GATC 6 cut(s) 124, 179, 247, 298, 465, 649
BstMWI GCNNNNNNNGC 3 cut(s) 523, 704, 771
BstNI CCWGG 2 cut(s) 503, 756
BstSCI CCNGG 3 cut(s) 243, 501, 754
BstSFI CTRYAG 1 cut(s) 529
BstUI CGCG 1 cut(s) 231
BstV1I GCAGC 2 cut(s) 45, 838
BstV2I GAAGAC 2 cut(s) 79, 602
BstX2I RGATCY 2 cut(s) 247, 298
BstYI RGATCY 2 cut(s) 247, 298
Bsu15I ATCGAT 1 cut(s) 648
BsuRI GGCC 8 cut(s) 170, 189, 207, 333, 395, 592, 644, 691
BsuTUI ATCGAT 1 cut(s) 648
BtgZI GCGATG 2 cut(s) 454, 470
BtsCI GGATG 1 cut(s) 715
BtsIMutI CAGTG 2 cut(s) 640, 796
CfoI GCGC 1 cut(s) 554
Cfr13I GGNCC 5 cut(s) 187, 393, 520, 590, 676
ClaI ATCGAT 1 cut(s) 648
CseI GACGC 1 cut(s) 755
Csp6I GTAC 5 cut(s) 4, 103, 306, 367, 430
CviAII CATG 4 cut(s) 106, 217, 238, 823
CviQI GTAC 5 cut(s) 4, 103, 306, 367, 430
DdeI CTNAG 1 cut(s) 699
DpnI GATC 6 cut(s) 126, 181, 249, 300, 467, 651
DpnII GATC 6 cut(s) 124, 179, 247, 298, 465, 649
DraIII CACNNNGTG 1 cut(s) 363
DrdI GACNNNNNNGTC 1 cut(s) 83
DseDI GACNNNNNNGTC 1 cut(s) 83
EaeI YGGCCR 2 cut(s) 331, 642
Eam1104I CTCTTC 1 cut(s) 503
EarI CTCTTC 1 cut(s) 503
EciI GGCGGA 1 cut(s) 157
Eco130I CCWWGG 1 cut(s) 118
Eco147I AGGCCT 2 cut(s) 207, 691
Eco24I GRGCYC 1 cut(s) 376
Eco47I GGWCC 2 cut(s) 520, 676
Eco57I CTGAAG 1 cut(s) 272
Eco88I CYCGRG 1 cut(s) 377
EcoO109I RGGNCCY 1 cut(s) 676
EcoRI GAATTC 1 cut(s) 212
EcoRII CCWGG 2 cut(s) 501, 754
EcoT14I CCWWGG 1 cut(s) 118
EcoT22I ATGCAT 1 cut(s) 222
EcoT38I GRGCYC 1 cut(s) 376
ErhI CCWWGG 1 cut(s) 118
FaeI CATG 4 cut(s) 109, 220, 241, 826
FaqI GGGAC 2 cut(s) 475, 689
FatI CATG 4 cut(s) 105, 216, 237, 822
FauI CCCGC 1 cut(s) 224
FauNDI CATATG 1 cut(s) 628
Fnu4HI GCNGC 4 cut(s) 34, 328, 331, 827
FokI GGATG 1 cut(s) 702
FriOI GRGCYC 1 cut(s) 376
Fsp4HI GCNGC 4 cut(s) 34, 328, 331, 827
FspBI CTAG 2 cut(s) 26, 693
GlaI GCGC 1 cut(s) 553
GluI GCNGC 4 cut(s) 34, 328, 331, 827
GsuI CTGGAG 1 cut(s) 695
HaeII RGCGCY 1 cut(s) 555
HaeIII GGCC 8 cut(s) 170, 189, 207, 333, 395, 592, 644, 691
HapII CCGG 5 cut(s) 7, 244, 257, 518, 593
HgaI GACGC 1 cut(s) 755
HhaI GCGC 1 cut(s) 554
Hin1I GRCGYC 1 cut(s) 84
Hin1II CATG 4 cut(s) 109, 220, 241, 826
Hin6I GCGC 1 cut(s) 552
HinP1I GCGC 1 cut(s) 552
HincII GTYRAC 1 cut(s) 745
HindII GTYRAC 1 cut(s) 745
HinfI GANTC 6 cut(s) 153, 262, 512, 566, 638, 659
HpaII CCGG 5 cut(s) 7, 244, 257, 518, 593
HphI GGTGA 5 cut(s) 134, 215, 283, 346, 518
Hpy166II GTNNAC 2 cut(s) 274, 745
Hpy188I TCNGA 6 cut(s) 166, 179, 252, 298, 486, 801
Hpy188III TCNNGA 2 cut(s) 289, 727
Hpy8I GTNNAC 2 cut(s) 274, 745
Hpy99I CGWCG 2 cut(s) 83, 86
HpyAV CCTTC 3 cut(s) 425, 433, 730
HpyCH4III ACNGT 2 cut(s) 480, 791
HpyCH4IV ACGT 2 cut(s) 84, 351
HpyCH4V TGCA 7 cut(s) 33, 202, 220, 241, 490, 774, 826
HpyF10VI GCNNNNNNNGC 3 cut(s) 523, 704, 771
HpyF3I CTNAG 1 cut(s) 699
HpySE526I ACGT 2 cut(s) 84, 351
Hsp92I GRCGYC 1 cut(s) 84
Hsp92II CATG 4 cut(s) 109, 220, 241, 826
HspAI GCGC 1 cut(s) 552
KflI GGGWCCC 1 cut(s) 676
Kzo9I GATC 6 cut(s) 124, 179, 247, 298, 465, 649
LmnI GCTCC 4 cut(s) 144, 559, 754, 839
Lsp1109I GCAGC 2 cut(s) 45, 838
LweI GCATC 6 cut(s) 229, 372, 477, 567, 612, 724
MaeI CTAG 2 cut(s) 26, 693
MaeII ACGT 2 cut(s) 84, 351
MaeIII GTNAC 2 cut(s) 352, 506
MalI GATC 6 cut(s) 126, 181, 249, 300, 467, 651
MboI GATC 6 cut(s) 124, 179, 247, 298, 465, 649
MboII GAAGA 5 cut(s) 79, 490, 602, 715, 814
MflI RGATCY 2 cut(s) 247, 298
MhlI GDGCHC 2 cut(s) 21, 376
MluCI AATT 1 cut(s) 212
MlyI GAGTC 1 cut(s) 668
MnlI CCTC 6 cut(s) 103, 132, 160, 504, 725, 762
Mph1103I ATGCAT 1 cut(s) 222
MroXI GAANNNNTTC 1 cut(s) 480
MspI CCGG 5 cut(s) 7, 244, 257, 518, 593
MspR9I CCNGG 3 cut(s) 245, 503, 756
MvaI CCWGG 2 cut(s) 503, 756
MvnI CGCG 1 cut(s) 231
MwoI GCNNNNNNNGC 3 cut(s) 523, 704, 771
NciI CCSGG 1 cut(s) 245
NdeI CATATG 1 cut(s) 628
NdeII GATC 6 cut(s) 124, 179, 247, 298, 465, 649
NlaIII CATG 4 cut(s) 109, 220, 241, 826
NlaIV GGNNCC 4 cut(s) 677, 678, 798, 841
NmuCI GTSAC 2 cut(s) 352, 506
NsiI ATGCAT 1 cut(s) 222
PceI AGGCCT 2 cut(s) 207, 691
PdmI GAANNNNTTC 1 cut(s) 480
PfeI GAWTC 5 cut(s) 153, 262, 512, 566, 638
PflFI GACNNNGTC 1 cut(s) 83
PflMI CCANNNNNTGG 1 cut(s) 363
PkrI GCNGC 4 cut(s) 35, 329, 332, 828
PleI GAGTC 1 cut(s) 667
PpsI GAGTC 1 cut(s) 667
PpuMI RGGWCCY 1 cut(s) 676
Psp5II RGGWCCY 1 cut(s) 676
Psp6I CCWGG 2 cut(s) 501, 754
PspGI CCWGG 2 cut(s) 501, 754
PspN4I GGNNCC 4 cut(s) 677, 678, 798, 841
PspPI GGNCC 5 cut(s) 187, 393, 520, 590, 676
PspPPI RGGWCCY 1 cut(s) 676
PsuI RGATCY 2 cut(s) 247, 298
PsyI GACNNNGTC 1 cut(s) 83
RsaI GTAC 5 cut(s) 5, 104, 307, 368, 431
RsaNI GTAC 5 cut(s) 4, 103, 306, 367, 430
SatI GCNGC 4 cut(s) 34, 328, 331, 827
Sau3AI GATC 6 cut(s) 124, 179, 247, 298, 465, 649
Sau96I GGNCC 5 cut(s) 187, 393, 520, 590, 676
SchI GAGTC 1 cut(s) 668
ScrFI CCNGG 3 cut(s) 245, 503, 756
SduI GDGCHC 2 cut(s) 21, 376
SfaNI GCATC 6 cut(s) 229, 372, 477, 567, 612, 724
SfcI CTRYAG 1 cut(s) 529
SinI GGWCC 2 cut(s) 520, 676
Sse9I AATT 1 cut(s) 212
SseBI AGGCCT 2 cut(s) 207, 691
SsiI CCGC 4 cut(s) 142, 231, 327, 330
SspMI CTAG 2 cut(s) 26, 693
StuI AGGCCT 2 cut(s) 207, 691
StyD4I CCNGG 3 cut(s) 243, 501, 754
StyI CCWWGG 1 cut(s) 118
TaaI ACNGT 2 cut(s) 480, 791
TaiI ACGT 2 cut(s) 87, 354
TaqI TCGA 4 cut(s) 321, 418, 613, 648
TasI AATT 1 cut(s) 212
TatI WGTACW 1 cut(s) 102
TauI GCSGC 2 cut(s) 330, 333
TfiI GAWTC 5 cut(s) 153, 262, 512, 566, 638
TscAI CASTG 2 cut(s) 640, 796
TseFI GTSAC 2 cut(s) 352, 506
TseI GCWGC 2 cut(s) 33, 826
Tsp45I GTSAC 2 cut(s) 352, 506
TspDTI ATGAA 2 cut(s) 205, 226
TspGWI ACGGA 3 cut(s) 4, 329, 586
TspRI CASTG 2 cut(s) 640, 796
Tth111I GACNNNGTC 1 cut(s) 83
Van91I CCANNNNNTGG 1 cut(s) 363
VpaK11BI GGWCC 2 cut(s) 520, 676
XapI RAATTY 1 cut(s) 212
XmnI GAANNNNTTC 1 cut(s) 480
XspI CTAG 2 cut(s) 26, 693
ZraI GACGTC 1 cut(s) 85
Zsp2I ATGCAT 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.