Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00438

Orthogroup ID

OG0000445

Physical Location & Seq

Genomic Coordinates Reverse (-)

43919 .. 44786

Gene Structure 868 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G010370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGAGAGGTGCAAGTTCACGAAGCAAGTAGACGCAGGTAGTTTTGGGCATGTTTATAAAGCCGTTGATAAGACGACCGGAGAGTTCGTCGCCATCAAAGAGTTGAAGCACTTGTGTCAGTCTTCATATCTAGAGCTACCAAAAGTCCAGGCACTGACTAGGTTGAAGCACCCAAACGTTGTCAACCTCAAGAGGATCCAAAGGCTACACGGTGTCGTCTTTTTCATCCTTGAATACATGCAAGGTATCCTGTCTCTCCTGAAGGCTGAAGGTGTGATCAAGATTTCTGATCTTAGTGCTGCAAGGGAGATCAACTCCAGCCCACCATTCAGTGATTACTCCAGCCCATCTAAGTTGCTGCTAGACTCTTTCCTCTACAACGAAAAGGTTGACATGTGGGCAATAAGAGCGATCATGGCCAAGTGGTTTCTCATGCGCCCTCTGTTTTTGGATTCGAGTTCGCCAAATCGGATGCATCAAATTTGTATAGTCATTGGGTTCCAACAAGGGGTACGTGGAGGGAAGGATATACGGTCATGGTTCTGTGATTCTACAGTCGAGCTCATCGAGTCGATTTGTTCTTGGGATCCTTTGAAGAGGCTAACAGCTGCACAAGCTGTTCACCATCCTTTCTTCACTAGAGTCTACAAAGATTCACATATTACTAATTACTCAGCTAACAAGGTTGGAAATGTAATTAAGTTGCATGCAGCAGCTAGCCTATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

242

Amino Acids

27.49

Weight (kDa)

9.41

Isoelectric Point (pI)

35.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	5 - 82	6.8e-07	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	8 - 82	1.8e-10	Protein kinase domain
Pkinase	PF00069	86 - 212	2.6e-11	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19110 AT4G19110 AT4G19110 AT5G45430 AT5G45430
fragaria_vesca	FvH4_2g16890 FvH4_5g19220 FvH4_5g19340 FvH4_5g19350 FvH4_5g19360 FvH4_5g23910 FvH4_7g27810
malus_domestica	MD00G1001400.v1.1 MD04G1058900.v1.1 MD04G1059300.v1.1 MD04G1059500.v1.1 MD04G1059600.v1.1 MD04G1059800.v1.1 MD04G1061700.v1.1 MD04G1061800.v1.1 MD06G1014800.v1.1 MD06G1052900.v1.1 MD06G1055500.v1.1
prunus_persica	Prupe.5G021300_v2.0.a1 Prupe.5G065900_v2.0.a1 Prupe.5G066500_v2.0.a1
pyrus_communis	pycom06g04440
rosa_chinensis	RchiOBHm_Chr1g0374681 RchiOBHm_Chr2g0120471 RchiOBHm_Chr2g0120711 RchiOBHm_Chr7g0203821 RchiOBHm_Chr7g0203861 RchiOBHm_Chr7g0208401 RchiOBHm_Chr7g0209011 RchiOBHm_Chr7g0213341
rosa_laevigata	RLG00000001348 RLG00000002813 RLG00000003173 RLG00000003212 RLG00000003503 RLG00000022835 RLG00000026723 RLG00000035532
rosa_multiflora	Rmu_co7960007.1_g000001 Rmu_co7963796.1_g000001 Rmu_co8519951.1_g000002 Rmu_sc0002038.1_g000009 Rmu_sc0004947.1_g000015 Rmu_sc0007490.1_g000005 Rmu_sc0011180.1_g000003 Rmu_sc0015273.1_g000013 Rmu_ssc0000190.1_g000014 Rmu_ssc0000372.1_g000031
rosa_roxburghii	Rroxscaffold_3G00246080 Rroxscaffold_3G00249860 Rroxscaffold_3G00249870 Rroxscaffold_3G00253500 Rroxscaffold_4G00283340
rosa_rugosa	Rorug01G0384300 Rorug07G0079000 Rorug07G0079000 Rorug07G0079000 Rorug07G0108300 Rorug07G0141200
rosa_samantha	Rh1AG395700 Rh1BG359900 Rh1DG006600 Rh1DG390900 Rh2AG287100 Rh3BG335800 Rh3CG321100 Rh5DG116800 Rh7AG273000 Rh7BG207600 Rh7BG207800 Rh7BG237700 Rh7BG268400 Rh7CG221100 Rh7CG221300 Rh7CG254000 Rh7CG257900 Rh7CG292200 Rh7DG215700 Rh7DG215900 Rh7DG244500 Rh7DG249800 Rh7DG280700
rosa_wichuraiana	Rw0G010370 Rw1G035090 Rw2G023020 Rw7G018200 Rw7G020570 Rw7G023690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	57
Acc36I	ACCTGC	1 cut(s)	26
AccI	GTMKAC	2 cut(s)	30, 645
AclI	AACGTT	1 cut(s)	177
AclWI	GGATC	4 cut(s)	190, 203, 581, 594
AcoI	YGGCCR	1 cut(s)	417
AcsI	RAATTY	1 cut(s)	480
AcuI	CTGAAG	2 cut(s)	281, 288
AfaI	GTAC	1 cut(s)	513
AfiI	CCNNNNNNNGG	1 cut(s)	508
AflIII	ACRYGT	1 cut(s)	393
AgsI	TTSAA	4 cut(s)	106, 166, 233, 595
AjnI	CCWGG	1 cut(s)	147
AluBI	AGCT	6 cut(s)	136, 562, 608, 617, 677, 716
AluI	AGCT	6 cut(s)	136, 562, 608, 617, 677, 716
Alw21I	GWGCWC	1 cut(s)	564
Alw26I	GTCTC	1 cut(s)	258
AlwI	GGATC	4 cut(s)	190, 203, 581, 594
AlwNI	CAGNNNCTG	1 cut(s)	154
AoxI	GGCC	1 cut(s)	417
ApeKI	GCWGC	5 cut(s)	299, 358, 608, 710, 713
ApoI	RAATTY	1 cut(s)	480
AspLEI	GCGC	1 cut(s)	438
AsuHPI	GGTGA	1 cut(s)	614
AsuNHI	GCTAGC	1 cut(s)	716
BalI	TGGCCA	1 cut(s)	419
BamHI	GGATCC	2 cut(s)	195, 586
BanII	GRGCYC	1 cut(s)	564
BbsI	GAAGAC	1 cut(s)	114
Bbv12I	GWGCWC	1 cut(s)	564
BbvI	GCAGC	5 cut(s)	286, 345, 595, 722, 725
BccI	CCATC	3 cut(s)	101, 355, 633
BceAI	ACGGC	1 cut(s)	47
BciT130I	CCWGG	1 cut(s)	149
BciVI	GTATCC	1 cut(s)	257
BclI	TGATCA	1 cut(s)	276
BcoDI	GTCTC	1 cut(s)	258
BfaI	CTAG	6 cut(s)	131, 159, 362, 639, 717, 727
BfmI	CTRYAG	1 cut(s)	552
BfuAI	ACCTGC	1 cut(s)	26
BfuI	GTATCC	1 cut(s)	257
BisI	GCNGC	5 cut(s)	300, 359, 609, 711, 714
BlsI	GCNGC	5 cut(s)	301, 360, 610, 712, 715
Bme1390I	CCNGG	1 cut(s)	149
BmiI	GGNNCC	3 cut(s)	197, 500, 588
BmrFI	CCNGG	1 cut(s)	149
BmsI	GCATC	2 cut(s)	462, 484
BmtI	GCTAGC	1 cut(s)	720
BpiI	GAAGAC	1 cut(s)	114
BplI	GAGNNNNNCTC	2 cut(s)	299, 331
BpmI	CTGGAG	2 cut(s)	301, 325
BpuEI	CTTGAG	1 cut(s)	173
BsaAI	YACGTR	1 cut(s)	515
BsaWI	WCCGGW	1 cut(s)	77
BsaXI	ACNNNNNCTCC	2 cut(s)	72, 102
Bsc4I	CCNNNNNNNGG	1 cut(s)	508
BseBI	CCWGG	1 cut(s)	149
BseGI	GGATG	3 cut(s)	225, 477, 625
BseLI	CCNNNNNNNGG	1 cut(s)	508
BseMII	CTCAG	1 cut(s)	687
BseXI	GCAGC	5 cut(s)	286, 345, 595, 722, 725
BsgI	GTGCAG	1 cut(s)	594
Bsh1285I	CGRYCG	1 cut(s)	78
BshFI	GGCC	1 cut(s)	419
BsiEI	CGRYCG	1 cut(s)	78
BsiHKAI	GWGCWC	1 cut(s)	564
BsiSI	CCGG	1 cut(s)	78
BslI	CCNNNNNNNGG	1 cut(s)	508
BsmAI	GTCTC	1 cut(s)	258
BsnI	GGCC	1 cut(s)	419
Bsp1286I	GDGCHC	1 cut(s)	564
Bsp143I	GATC	6 cut(s)	195, 276, 289, 309, 411, 586
BspANI	GGCC	1 cut(s)	419
BspCNI	CTCAG	1 cut(s)	686
BspLI	GGNNCC	3 cut(s)	197, 500, 588
BspMI	ACCTGC	1 cut(s)	26
BspOI	GCTAGC	1 cut(s)	720
BspPI	GGATC	4 cut(s)	190, 203, 581, 594
BssMI	GATC	6 cut(s)	195, 276, 289, 309, 411, 586
Bst2UI	CCWGG	1 cut(s)	149
Bst4CI	ACNGT	3 cut(s)	212, 534, 556
Bst6I	CTCTTC	1 cut(s)	590
BstBAI	YACGTR	1 cut(s)	515
BstC8I	GCNNGC	2 cut(s)	708, 718
BstDEI	CTNAG	3 cut(s)	293, 351, 673
BstF5I	GGATG	3 cut(s)	225, 477, 625
BstHHI	GCGC	1 cut(s)	438
BstKTI	GATC	6 cut(s)	198, 279, 292, 312, 414, 589
BstMAI	GTCTC	1 cut(s)	258
BstMBI	GATC	6 cut(s)	195, 276, 289, 309, 411, 586
BstMCI	CGRYCG	1 cut(s)	78
BstMWI	GCNNNNNNNGC	3 cut(s)	407, 416, 614
BstNI	CCWGG	1 cut(s)	149
BstNSI	RCATGY	4 cut(s)	53, 241, 397, 710
BstSCI	CCNGG	1 cut(s)	147
BstSFI	CTRYAG	1 cut(s)	552
BstV1I	GCAGC	5 cut(s)	286, 345, 595, 722, 725
BstV2I	GAAGAC	1 cut(s)	114
BstX2I	RGATCY	2 cut(s)	195, 586
BstYI	RGATCY	2 cut(s)	195, 586
BsuI	GTATCC	1 cut(s)	257
BsuRI	GGCC	1 cut(s)	419
BtsCI	GGATG	3 cut(s)	225, 477, 625
BtsIMutI	CAGTG	2 cut(s)	152, 337
BveI	ACCTGC	1 cut(s)	26
Cac8I	GCNNGC	2 cut(s)	708, 718
CaiI	CAGNNNCTG	1 cut(s)	154
CfoI	GCGC	1 cut(s)	438
CseI	GACGC	1 cut(s)	41
Csp6I	GTAC	1 cut(s)	512
CviAII	CATG	7 cut(s)	50, 238, 394, 415, 433, 537, 707
CviQI	GTAC	1 cut(s)	512
DdeI	CTNAG	3 cut(s)	293, 351, 673
DpnI	GATC	6 cut(s)	197, 278, 291, 311, 413, 588
DpnII	GATC	6 cut(s)	195, 276, 289, 309, 411, 586
EaeI	YGGCCR	1 cut(s)	417
Eam1104I	CTCTTC	1 cut(s)	590
EarI	CTCTTC	1 cut(s)	590
Ecl136II	GAGCTC	1 cut(s)	562
Eco24I	GRGCYC	1 cut(s)	564
Eco53kI	GAGCTC	1 cut(s)	562
Eco57I	CTGAAG	2 cut(s)	281, 288
EcoICRI	GAGCTC	1 cut(s)	562
EcoRII	CCWGG	1 cut(s)	147
EcoT22I	ATGCAT	1 cut(s)	477
EcoT38I	GRGCYC	1 cut(s)	564
FaeI	CATG	7 cut(s)	53, 241, 397, 418, 436, 540, 710
FatI	CATG	7 cut(s)	49, 237, 393, 414, 432, 536, 706
FbaI	TGATCA	1 cut(s)	276
FblI	GTMKAC	2 cut(s)	30, 645
Fnu4HI	GCNGC	5 cut(s)	300, 359, 609, 711, 714
FokI	GGATG	3 cut(s)	212, 484, 612
FriOI	GRGCYC	1 cut(s)	564
Fsp4HI	GCNGC	5 cut(s)	300, 359, 609, 711, 714
FspBI	CTAG	6 cut(s)	131, 159, 362, 639, 717, 727
GlaI	GCGC	1 cut(s)	437
GluI	GCNGC	5 cut(s)	300, 359, 609, 711, 714
GsuI	CTGGAG	2 cut(s)	301, 325
HaeIII	GGCC	1 cut(s)	419
HapII	CCGG	1 cut(s)	78
HgaI	GACGC	1 cut(s)	41
HhaI	GCGC	1 cut(s)	438
Hin1II	CATG	7 cut(s)	53, 241, 397, 418, 436, 540, 710
Hin6I	GCGC	1 cut(s)	436
HinP1I	GCGC	1 cut(s)	436
HincII	GTYRAC	2 cut(s)	184, 391
HindII	GTYRAC	2 cut(s)	184, 391
HinfI	GANTC	6 cut(s)	365, 452, 548, 569, 642, 653
HpaII	CCGG	1 cut(s)	78
HphI	GGTGA	1 cut(s)	614
Hpy166II	GTNNAC	6 cut(s)	18, 31, 184, 391, 622, 646
Hpy188I	TCNGA	2 cut(s)	289, 471
Hpy188III	TCNNGA	5 cut(s)	19, 131, 190, 259, 280
Hpy8I	GTNNAC	6 cut(s)	18, 31, 184, 391, 622, 646
Hpy99I	CGWCG	1 cut(s)	92
HpyAV	CCTTC	3 cut(s)	256, 263, 517
HpyCH4III	ACNGT	3 cut(s)	212, 534, 556
HpyCH4IV	ACGT	2 cut(s)	177, 514
HpyCH4V	TGCA	7 cut(s)	12, 241, 302, 475, 611, 706, 710
HpyF10VI	GCNNNNNNNGC	3 cut(s)	407, 416, 614
HpyF3I	CTNAG	3 cut(s)	293, 351, 673
HpySE526I	ACGT	2 cut(s)	177, 514
Hsp92II	CATG	7 cut(s)	53, 241, 397, 418, 436, 540, 710
HspAI	GCGC	1 cut(s)	436
Ksp22I	TGATCA	1 cut(s)	276
Kzo9I	GATC	6 cut(s)	195, 276, 289, 309, 411, 586
LpnPI	CCDG	8 cut(s)	21, 91, 134, 161, 263, 272, 331, 355
Lsp1109I	GCAGC	5 cut(s)	286, 345, 595, 722, 725
LweI	GCATC	2 cut(s)	462, 484
MaeI	CTAG	6 cut(s)	131, 159, 362, 639, 717, 727
MaeII	ACGT	2 cut(s)	177, 514
MalI	GATC	6 cut(s)	197, 278, 291, 311, 413, 588
MboI	GATC	6 cut(s)	195, 276, 289, 309, 411, 586
MboII	GAAGA	3 cut(s)	114, 607, 625
MflI	RGATCY	2 cut(s)	195, 586
MhlI	GDGCHC	1 cut(s)	564
MlsI	TGGCCA	1 cut(s)	419
MluCI	AATT	3 cut(s)	480, 667, 696
MluNI	TGGCCA	1 cut(s)	419
MlyI	GAGTC	3 cut(s)	359, 578, 651
MmeI	TCCRAC	2 cut(s)	526, 667
MnlI	CCTC	6 cut(s)	186, 197, 383, 450, 512, 591
Mox20I	TGGCCA	1 cut(s)	419
Mph1103I	ATGCAT	1 cut(s)	477
MscI	TGGCCA	1 cut(s)	419
MseI	TTAA	1 cut(s)	699
Msp20I	TGGCCA	1 cut(s)	419
MspA1I	CMGCKG	1 cut(s)	608
MspI	CCGG	1 cut(s)	78
MspR9I	CCNGG	1 cut(s)	149
MvaI	CCWGG	1 cut(s)	149
MwoI	GCNNNNNNNGC	3 cut(s)	407, 416, 614
NdeII	GATC	6 cut(s)	195, 276, 289, 309, 411, 586
NheI	GCTAGC	1 cut(s)	716
NlaIII	CATG	7 cut(s)	53, 241, 397, 418, 436, 540, 710
NlaIV	GGNNCC	3 cut(s)	197, 500, 588
NsiI	ATGCAT	1 cut(s)	477
NspI	RCATGY	4 cut(s)	53, 241, 397, 710
PaeI	GCATGC	1 cut(s)	710
PciI	ACATGT	1 cut(s)	393
PcsI	WCGNNNNNNNCGW	1 cut(s)	564
PfeI	GAWTC	3 cut(s)	452, 548, 653
PkrI	GCNGC	5 cut(s)	301, 360, 610, 712, 715
PleI	GAGTC	3 cut(s)	359, 577, 650
PpsI	GAGTC	3 cut(s)	359, 577, 650
Ppu21I	YACGTR	1 cut(s)	515
PscI	ACATGT	1 cut(s)	393
PsiI	TTATAA	1 cut(s)	57
Psp124BI	GAGCTC	1 cut(s)	564
Psp1406I	AACGTT	1 cut(s)	177
Psp6I	CCWGG	1 cut(s)	147
PspGI	CCWGG	1 cut(s)	147
PspN4I	GGNNCC	3 cut(s)	197, 500, 588
PstNI	CAGNNNCTG	1 cut(s)	154
PsuI	RGATCY	2 cut(s)	195, 586
PvuII	CAGCTG	1 cut(s)	608
RsaI	GTAC	1 cut(s)	513
RsaNI	GTAC	1 cut(s)	512
SacI	GAGCTC	1 cut(s)	564
SaqAI	TTAA	1 cut(s)	699
SatI	GCNGC	5 cut(s)	300, 359, 609, 711, 714
Sau3AI	GATC	6 cut(s)	195, 276, 289, 309, 411, 586
SchI	GAGTC	3 cut(s)	359, 578, 651
ScrFI	CCNGG	1 cut(s)	149
SduI	GDGCHC	1 cut(s)	564
SfaNI	GCATC	2 cut(s)	462, 484
SfcI	CTRYAG	1 cut(s)	552
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
SphI	GCATGC	1 cut(s)	710
Sse9I	AATT	3 cut(s)	480, 667, 696
SspMI	CTAG	6 cut(s)	131, 159, 362, 639, 717, 727
SstI	GAGCTC	1 cut(s)	564
StyD4I	CCNGG	1 cut(s)	147
TaaI	ACNGT	3 cut(s)	212, 534, 556
TaiI	ACGT	2 cut(s)	180, 517
TaqI	TCGA	4 cut(s)	455, 558, 567, 572
TasI	AATT	3 cut(s)	480, 667, 696
TfiI	GAWTC	3 cut(s)	452, 548, 653
Tru1I	TTAA	1 cut(s)	699
Tru9I	TTAA	1 cut(s)	699
TscAI	CASTG	2 cut(s)	159, 337
TseI	GCWGC	5 cut(s)	299, 358, 608, 710, 713
TspDTI	ATGAA	2 cut(s)	114, 214
TspRI	CASTG	2 cut(s)	159, 337
XapI	RAATTY	1 cut(s)	480
XbaI	TCTAGA	1 cut(s)	130
XceI	RCATGY	4 cut(s)	53, 241, 397, 710
XmiI	GTMKAC	2 cut(s)	30, 645
XspI	CTAG	6 cut(s)	131, 159, 362, 639, 717, 727
Zsp2I	ATGCAT	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.