Rw1G035090
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Reverse (-)
62939698 .. 62940791
1094 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G035090.1

Sequence Viewer

Length: 1059 bp
ATGGAGCATTTGGGACTGTCTGGCGATCGAGCTAAAAATAAGCAGACTGGTGAAGTTGTTGCAATTAAAGAACTCAAGAAAAGATACTATTCATGGGATGAGTGCATCAGTCTTCGAGAAGTTAAGTCATTGCAGAAAATGAATCATCCAAACATTGTGGAGCTAAAACATTTGATCCTATCAGAAAATAATATTTTGTACTTTGTGTTCGACTATATGGAGTTCAACCTGTACCAGCTTATGAAAGATAAGGTAATGCCTTTCCCTGAATCTCAAGTGAGAGATTGGTGTTTAGAAGTTTTCAAAGGCCTTGCTCATATGCATCAACGCGGATATTTTCATCGCGATCTAAAGCCGGAGAACTTGTTGCTTAACAAAGATTTCAAAATCAAGATTGCAGATCTTGGTTTTGCTCGGGAAATCCATTCCCAACCACCCTATACTGAATATGTGTCGACACGCTGGTACCGAGCTCCGGAACTCTTATTCCCAGGGTTGTATAGCTCTAAAGTTGATATGTGGGCAATGGGTGCAATCATGGCCGAGTTGCTTACTCTCCTCCCTCTATTTCCTGGTATTAGTCAAGCAGATGAAATGTACAAAATTTGCAGTGTACTTGGCACACCAACCGAGGATTCATGGGCCGATGGGCTTCTTCTTGCAAGAGATATGAACTACCAGTTTCCACAGTTGGCTGGTGTTCATCTTTCGTCACTTATTCCATCAGTTAGTGATCATGCAATTAGCCTCATTAGTTCACTGTGTTCTTGGGACCCTTCCAAGAGGCCAACAGCTGCAGAGGCCCTCCACCATCCTTTCTTCAAGAGTTGCTATTATCAGTATTATGTTCCTCCACCTCTTCGTTGTCACAAATCAACAACTGCTGGAGCAACAAGGGAAGCGTCGGAGCAGCAAAAATATCTGCCTCCTGGAAAGAGAGAACGTTGCACGCGGTACTATGGGGAAGCCGCTGCATCCGCGTCCCATGAAAGCTGGAGTCCAATGGATTGGCAAGTCGGGAGAATCAAGTCAATCAACCGTTACATTGTCAACAACTAA

Protein Analysis

352

Amino Acids

40.66

Weight (kDa)

8.05

Isoelectric Point (pI)

44.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 10 - 274 6.8e-63 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 12 - 186 2.6e-31 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000445)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19110 AT4G19110 AT4G19110 AT5G45430 AT5G45430
fragaria_vesca FvH4_2g16890 FvH4_5g19220 FvH4_5g19340 FvH4_5g19350 FvH4_5g19360 FvH4_5g23910 FvH4_7g27810
malus_domestica MD00G1001400.v1.1 MD04G1058900.v1.1 MD04G1059300.v1.1 MD04G1059500.v1.1 MD04G1059600.v1.1 MD04G1059800.v1.1 MD04G1061700.v1.1 MD04G1061800.v1.1 MD06G1014800.v1.1 MD06G1052900.v1.1 MD06G1055500.v1.1
prunus_persica Prupe.5G021300_v2.0.a1 Prupe.5G065900_v2.0.a1 Prupe.5G066500_v2.0.a1
pyrus_communis pycom06g04440
rosa_chinensis RchiOBHm_Chr1g0374681 RchiOBHm_Chr2g0120471 RchiOBHm_Chr2g0120711 RchiOBHm_Chr7g0203821 RchiOBHm_Chr7g0203861 RchiOBHm_Chr7g0208401 RchiOBHm_Chr7g0209011 RchiOBHm_Chr7g0213341
rosa_laevigata RLG00000001348 RLG00000002813 RLG00000003173 RLG00000003212 RLG00000003503 RLG00000022835 RLG00000026723 RLG00000035532
rosa_multiflora Rmu_co7960007.1_g000001 Rmu_co7963796.1_g000001 Rmu_co8519951.1_g000002 Rmu_sc0002038.1_g000009 Rmu_sc0004947.1_g000015 Rmu_sc0007490.1_g000005 Rmu_sc0011180.1_g000003 Rmu_sc0015273.1_g000013 Rmu_ssc0000190.1_g000014 Rmu_ssc0000372.1_g000031
rosa_roxburghii Rroxscaffold_3G00246080 Rroxscaffold_3G00249860 Rroxscaffold_3G00249870 Rroxscaffold_3G00253500 Rroxscaffold_4G00283340
rosa_rugosa Rorug01G0384300 Rorug07G0079000 Rorug07G0079000 Rorug07G0079000 Rorug07G0108300 Rorug07G0141200
rosa_samantha Rh1AG395700 Rh1BG359900 Rh1DG006600 Rh1DG390900 Rh2AG287100 Rh3BG335800 Rh3CG321100 Rh5DG116800 Rh7AG273000 Rh7BG207600 Rh7BG207800 Rh7BG237700 Rh7BG268400 Rh7CG221100 Rh7CG221300 Rh7CG254000 Rh7CG257900 Rh7CG292200 Rh7DG215700 Rh7DG215900 Rh7DG244500 Rh7DG249800 Rh7DG280700
rosa_wichuraiana Rw0G010370 Rw1G035090 Rw2G023020 Rw7G018200 Rw7G020570 Rw7G023690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 465
AccB1I GGYRCC 1 cut(s) 465
AccI GTMKAC 1 cut(s) 455
AccII CGCG 4 cut(s) 330, 345, 952, 980
AccIII TCCGGA 1 cut(s) 475
AciI CCGC 4 cut(s) 330, 952, 969, 978
AclI AACGTT 1 cut(s) 943
AclWI GGATC 1 cut(s) 169
AcoI YGGCCR 1 cut(s) 540
AcsI RAATTY 1 cut(s) 603
AfaI GTAC 6 cut(s) 200, 233, 467, 599, 615, 956
AfiI CCNNNNNNNGG 1 cut(s) 475
AgsI TTSAA 4 cut(s) 226, 304, 385, 823
AjnI CCWGG 3 cut(s) 490, 571, 928
AjuI GAANNNNNNNTTGG 2 cut(s) 619, 651
AloI GAACNNNNNNTCC 2 cut(s) 471, 503
AluBI AGCT 7 cut(s) 32, 163, 238, 473, 504, 794, 993
AluI AGCT 7 cut(s) 32, 163, 238, 473, 504, 794, 993
Alw21I GWGCWC 1 cut(s) 475
AlwI GGATC 1 cut(s) 169
Ama87I CYCGRG 1 cut(s) 414
Aor13HI TCCGGA 1 cut(s) 475
AoxI GGCC 5 cut(s) 307, 540, 642, 785, 801
ApeKI GCWGC 3 cut(s) 794, 910, 971
ApoI RAATTY 1 cut(s) 603
Asp718I GGTACC 1 cut(s) 465
AspS9I GGNCC 3 cut(s) 642, 772, 802
AsuHPI GGTGA 1 cut(s) 62
AvaI CYCGRG 1 cut(s) 414
AvaII GGWCC 1 cut(s) 772
BaeI ACNNNNGTAYC 2 cut(s) 449, 482
BanI GGYRCC 1 cut(s) 465
BanII GRGCYC 1 cut(s) 475
BbsI GAAGAC 1 cut(s) 104
Bbv12I GWGCWC 1 cut(s) 475
BbvI GCAGC 3 cut(s) 781, 922, 958
BccI CCATC 3 cut(s) 641, 730, 819
BciT130I CCWGG 3 cut(s) 492, 573, 930
BclI TGATCA 1 cut(s) 733
BfmI CTRYAG 1 cut(s) 795
BglII AGATCT 1 cut(s) 400
BisI GCNGC 4 cut(s) 795, 911, 969, 972
BlsI GCNGC 4 cut(s) 796, 912, 970, 973
Bme1390I CCNGG 3 cut(s) 492, 573, 930
Bme18I GGWCC 1 cut(s) 772
BmeT110I CYCGRG 1 cut(s) 414
BmgT120I GGNCC 3 cut(s) 642, 772, 802
BmiI GGNNCC 3 cut(s) 467, 773, 774
BmrFI CCNGG 3 cut(s) 492, 573, 930
BmsI GCATC 3 cut(s) 114, 331, 983
BpiI GAAGAC 1 cut(s) 104
BpmI CTGGAG 2 cut(s) 906, 1015
BpuEI CTTGAG 2 cut(s) 59, 258
BsaJI CCNNGG 3 cut(s) 490, 491, 630
BsaWI WCCGGW 1 cut(s) 475
BsaXI ACNNNNNCTCC 2 cut(s) 350, 380
Bsc4I CCNNNNNNNGG 1 cut(s) 475
Bse1I ACTGG 2 cut(s) 52, 679
Bse3DI GCAATG 2 cut(s) 128, 531
BseAI TCCGGA 1 cut(s) 475
BseBI CCWGG 3 cut(s) 492, 573, 930
BseDI CCNNGG 3 cut(s) 490, 491, 630
BseGI GGATG 4 cut(s) 103, 145, 811, 974
BseLI CCNNNNNNNGG 1 cut(s) 475
BseMI GCAATG 2 cut(s) 128, 531
BseNI ACTGG 2 cut(s) 52, 679
BseRI GAGGAG 1 cut(s) 548
BseXI GCAGC 3 cut(s) 781, 922, 958
Bsh1236I CGCG 4 cut(s) 330, 345, 952, 980
Bsh1285I CGRYCG 1 cut(s) 28
BshFI GGCC 5 cut(s) 309, 542, 644, 787, 803
BshNI GGYRCC 1 cut(s) 465
BsiEI CGRYCG 1 cut(s) 28
BsiHKAI GWGCWC 1 cut(s) 475
BsiHKCI CYCGRG 1 cut(s) 414
BsiSI CCGG 2 cut(s) 356, 476
BslFI GGGAC 3 cut(s) 27, 785, 967
BslI CCNNNNNNNGG 1 cut(s) 475
BsmFI GGGAC 3 cut(s) 27, 785, 967
BsnI GGCC 5 cut(s) 309, 542, 644, 787, 803
BsoBI CYCGRG 1 cut(s) 414
Bsp1286I GDGCHC 1 cut(s) 475
Bsp13I TCCGGA 1 cut(s) 475
Bsp1407I TGTACA 1 cut(s) 597
Bsp143I GATC 5 cut(s) 25, 174, 346, 400, 733
Bsp68I TCGCGA 1 cut(s) 345
BspACI CCGC 4 cut(s) 330, 952, 969, 978
BspANI GGCC 5 cut(s) 309, 542, 644, 787, 803
BspEI TCCGGA 1 cut(s) 475
BspFNI CGCG 4 cut(s) 330, 345, 952, 980
BspLI GGNNCC 3 cut(s) 467, 773, 774
BspMAI CTGCAG 1 cut(s) 799
BspPI GGATC 1 cut(s) 169
BspT107I GGYRCC 1 cut(s) 465
BsrDI GCAATG 2 cut(s) 128, 531
BsrGI TGTACA 1 cut(s) 597
BsrI ACTGG 2 cut(s) 52, 679
BssECI CCNNGG 3 cut(s) 490, 491, 630
BssMI GATC 5 cut(s) 25, 174, 346, 400, 733
Bst2UI CCWGG 3 cut(s) 492, 573, 930
Bst4CI ACNGT 4 cut(s) 18, 690, 762, 1040
Bst6I CTCTTC 1 cut(s) 864
BstAPI GCANNNNNTGC 1 cut(s) 530
BstAUI TGTACA 1 cut(s) 597
BstC8I GCNNGC 1 cut(s) 950
BstF5I GGATG 4 cut(s) 103, 145, 811, 974
BstFNI CGCG 4 cut(s) 330, 345, 952, 980
BstKTI GATC 5 cut(s) 28, 177, 349, 403, 736
BstMBI GATC 5 cut(s) 25, 174, 346, 400, 733
BstMCI CGRYCG 1 cut(s) 28
BstMWI GCNNNNNNNGC 4 cut(s) 530, 539, 800, 977
BstNI CCWGG 3 cut(s) 492, 573, 930
BstSCI CCNGG 3 cut(s) 490, 571, 928
BstSFI CTRYAG 1 cut(s) 795
BstUI CGCG 4 cut(s) 330, 345, 952, 980
BstV1I GCAGC 3 cut(s) 781, 922, 958
BstV2I GAAGAC 1 cut(s) 104
BstX2I RGATCY 1 cut(s) 400
BstXI CCANNNNNNTGG 1 cut(s) 1008
BstYI RGATCY 1 cut(s) 400
BsuRI GGCC 5 cut(s) 309, 542, 644, 787, 803
BtgZI GCGATG 1 cut(s) 326
BtsCI GGATG 4 cut(s) 103, 145, 811, 974
BtsI GCAGTG 1 cut(s) 616
BtsIMutI CAGTG 2 cut(s) 616, 758
BtuMI TCGCGA 1 cut(s) 345
Cac8I GCNNGC 1 cut(s) 950
Cfr13I GGNCC 3 cut(s) 642, 772, 802
CseI GACGC 2 cut(s) 891, 969
Csp6I GTAC 6 cut(s) 199, 232, 466, 598, 614, 955
CspCI CAANNNNNGTGG 2 cut(s) 138, 173
CviAII CATG 5 cut(s) 93, 538, 639, 737, 986
CviQI GTAC 6 cut(s) 199, 232, 466, 598, 614, 955
DpnI GATC 5 cut(s) 27, 176, 348, 402, 735
DpnII GATC 5 cut(s) 25, 174, 346, 400, 733
EaeI YGGCCR 1 cut(s) 540
Eam1104I CTCTTC 1 cut(s) 864
EarI CTCTTC 1 cut(s) 864
Ecl136II GAGCTC 1 cut(s) 473
Eco147I AGGCCT 1 cut(s) 309
Eco24I GRGCYC 1 cut(s) 475
Eco47I GGWCC 1 cut(s) 772
Eco53kI GAGCTC 1 cut(s) 473
Eco88I CYCGRG 1 cut(s) 414
EcoICRI GAGCTC 1 cut(s) 473
EcoO109I RGGNCCY 2 cut(s) 772, 802
EcoRII CCWGG 3 cut(s) 490, 571, 928
EcoT22I ATGCAT 1 cut(s) 324
EcoT38I GRGCYC 1 cut(s) 475
FaeI CATG 5 cut(s) 96, 541, 642, 740, 989
FaqI GGGAC 3 cut(s) 27, 785, 967
FatI CATG 5 cut(s) 92, 537, 638, 736, 985
FauNDI CATATG 1 cut(s) 318
FbaI TGATCA 1 cut(s) 733
FblI GTMKAC 1 cut(s) 455
Fnu4HI GCNGC 4 cut(s) 795, 911, 969, 972
FokI GGATG 4 cut(s) 110, 132, 798, 961
FriOI GRGCYC 1 cut(s) 475
Fsp4HI GCNGC 4 cut(s) 795, 911, 969, 972
GluI GCNGC 4 cut(s) 795, 911, 969, 972
GsuI CTGGAG 2 cut(s) 906, 1015
HaeIII GGCC 5 cut(s) 309, 542, 644, 787, 803
HapII CCGG 2 cut(s) 356, 476
HgaI GACGC 2 cut(s) 891, 969
Hin1II CATG 5 cut(s) 96, 541, 642, 740, 989
HincII GTYRAC 2 cut(s) 456, 1051
HindII GTYRAC 2 cut(s) 456, 1051
HinfI GANTC 5 cut(s) 142, 269, 635, 997, 1023
HpaII CCGG 2 cut(s) 356, 476
HphI GGTGA 1 cut(s) 62
Hpy166II GTNNAC 4 cut(s) 456, 614, 758, 1051
Hpy188I TCNGA 2 cut(s) 184, 907
Hpy188III TCNNGA 8 cut(s) 76, 116, 344, 391, 416, 476, 823, 1018
Hpy8I GTNNAC 4 cut(s) 456, 614, 758, 1051
Hpy99I CGWCG 1 cut(s) 907
HpyAV CCTTC 1 cut(s) 786
HpyCH4III ACNGT 4 cut(s) 18, 690, 762, 1040
HpyCH4IV ACGT 1 cut(s) 943
HpyF10VI GCNNNNNNNGC 4 cut(s) 530, 539, 800, 977
HpySE526I ACGT 1 cut(s) 943
Hsp92II CATG 5 cut(s) 96, 541, 642, 740, 989
KflI GGGWCCC 1 cut(s) 772
Kpn2I TCCGGA 1 cut(s) 475
KpnI GGTACC 1 cut(s) 469
Ksp22I TGATCA 1 cut(s) 733
Kzo9I GATC 5 cut(s) 25, 174, 346, 400, 733
LmnI GCTCC 5 cut(s) 4, 160, 478, 887, 907
Lsp1109I GCAGC 3 cut(s) 781, 922, 958
LweI GCATC 3 cut(s) 114, 331, 983
MaeII ACGT 1 cut(s) 943
MaeIII GTNAC 3 cut(s) 711, 866, 1040
MalI GATC 5 cut(s) 27, 176, 348, 402, 735
MboI GATC 5 cut(s) 25, 174, 346, 400, 733
MboII GAAGA 4 cut(s) 104, 647, 811, 851
MflI RGATCY 1 cut(s) 400
MhlI GDGCHC 1 cut(s) 475
MluCI AATT 3 cut(s) 63, 603, 741
MlyI GAGTC 1 cut(s) 1006
MmeI TCCRAC 1 cut(s) 885
Mph1103I ATGCAT 1 cut(s) 324
MroI TCCGGA 1 cut(s) 475
MseI TTAA 3 cut(s) 66, 123, 372
MspA1I CMGCKG 2 cut(s) 794, 971
MspI CCGG 2 cut(s) 356, 476
MspR9I CCNGG 3 cut(s) 492, 573, 930
MvaI CCWGG 3 cut(s) 492, 573, 930
MvnI CGCG 4 cut(s) 330, 345, 952, 980
MwoI GCNNNNNNNGC 4 cut(s) 530, 539, 800, 977
NdeI CATATG 1 cut(s) 318
NdeII GATC 5 cut(s) 25, 174, 346, 400, 733
NlaIII CATG 5 cut(s) 96, 541, 642, 740, 989
NlaIV GGNNCC 3 cut(s) 467, 773, 774
NmeAIII GCCGAG 1 cut(s) 568
NmuCI GTSAC 2 cut(s) 711, 866
NruI TCGCGA 1 cut(s) 345
NsiI ATGCAT 1 cut(s) 324
PasI CCCWGGG 1 cut(s) 491
PceI AGGCCT 1 cut(s) 309
PcsI WCGNNNNNNNCGW 1 cut(s) 466
PfeI GAWTC 4 cut(s) 142, 269, 635, 1023
PfoI TCCNGGA 1 cut(s) 928
PkrI GCNGC 4 cut(s) 796, 912, 970, 973
Ple19I CGATCG 1 cut(s) 28
PleI GAGTC 1 cut(s) 1005
PpsI GAGTC 1 cut(s) 1005
PpuMI RGGWCCY 1 cut(s) 772
Psp124BI GAGCTC 1 cut(s) 475
Psp1406I AACGTT 1 cut(s) 943
Psp5II RGGWCCY 1 cut(s) 772
Psp6I CCWGG 3 cut(s) 490, 571, 928
PspGI CCWGG 3 cut(s) 490, 571, 928
PspN4I GGNNCC 3 cut(s) 467, 773, 774
PspPI GGNCC 3 cut(s) 642, 772, 802
PspPPI RGGWCCY 1 cut(s) 772
PsrI GAACNNNNNNTAC 2 cut(s) 191, 223
PstI CTGCAG 1 cut(s) 799
PsuI RGATCY 1 cut(s) 400
PvuI CGATCG 1 cut(s) 28
PvuII CAGCTG 1 cut(s) 794
RruI TCGCGA 1 cut(s) 345
RsaI GTAC 6 cut(s) 200, 233, 467, 599, 615, 956
RsaNI GTAC 6 cut(s) 199, 232, 466, 598, 614, 955
SacI GAGCTC 1 cut(s) 475
SalI GTCGAC 1 cut(s) 454
SaqAI TTAA 3 cut(s) 66, 123, 372
SatI GCNGC 4 cut(s) 795, 911, 969, 972
Sau3AI GATC 5 cut(s) 25, 174, 346, 400, 733
Sau96I GGNCC 3 cut(s) 642, 772, 802
SchI GAGTC 1 cut(s) 1006
ScrFI CCNGG 3 cut(s) 492, 573, 930
SduI GDGCHC 1 cut(s) 475
SfaNI GCATC 3 cut(s) 114, 331, 983
SfcI CTRYAG 1 cut(s) 795
SinI GGWCC 1 cut(s) 772
SmlI CTYRAG 2 cut(s) 74, 273
SmoI CTYRAG 2 cut(s) 74, 273
Sse9I AATT 3 cut(s) 63, 603, 741
SseBI AGGCCT 1 cut(s) 309
SsiI CCGC 4 cut(s) 330, 952, 969, 978
SspI AATATT 1 cut(s) 193
SstI GAGCTC 1 cut(s) 475
StuI AGGCCT 1 cut(s) 309
StyD4I CCNGG 3 cut(s) 490, 571, 928
TaaI ACNGT 4 cut(s) 18, 690, 762, 1040
TaiI ACGT 1 cut(s) 946
TaqI TCGA 4 cut(s) 28, 115, 210, 455
TasI AATT 3 cut(s) 63, 603, 741
TatI WGTACW 3 cut(s) 198, 597, 613
TauI GCSGC 1 cut(s) 971
TfiI GAWTC 4 cut(s) 142, 269, 635, 1023
Tru1I TTAA 3 cut(s) 66, 123, 372
Tru9I TTAA 3 cut(s) 66, 123, 372
TscAI CASTG 2 cut(s) 616, 765
TseFI GTSAC 2 cut(s) 711, 866
TseI GCWGC 3 cut(s) 794, 910, 971
Tsp45I GTSAC 2 cut(s) 711, 866
TspDTI ATGAA 9 cut(s) 81, 155, 257, 329, 606, 627, 686, 692, 1002
TspRI CASTG 2 cut(s) 616, 765
VpaK11BI GGWCC 1 cut(s) 772
XapI RAATTY 1 cut(s) 603
XmiI GTMKAC 1 cut(s) 455
Zsp2I ATGCAT 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.