Rmu_sc0002038.1_g000009

GTP cyclohydrolase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002038.1
Physical Location & Seq
Reverse (-)
35214 .. 35561
348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002038.1_g000009.1.cds

Sequence Viewer

Length: 348 bp
atggtcagtgttataactataccccttgacttatgcttagttttgggtatggatgctaagccttgttgtcaaggtggagatgtgatagttgttgtggaggctaaccacacctatatgatctgtagagggattgagaagtttggaagtagcacagctataattgcagtactgggtcgtttttcaactgcccctgctgcaagggcaagtttttgtagagcctcccaaacattgccatttcaggaccgtgatcctaatttatctattaactatcaattcttttctactcagttccttgccttggcagtttatgcttctgagccacaagttcatgatatcgtcaaaggatga

Protein Analysis

115

Amino Acids

12.43

Weight (kDa)

6.02

Isoelectric Point (pI)

28.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000445)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19110 AT4G19110 AT4G19110 AT5G45430 AT5G45430
fragaria_vesca FvH4_2g16890 FvH4_5g19220 FvH4_5g19340 FvH4_5g19350 FvH4_5g19360 FvH4_5g23910 FvH4_7g27810
malus_domestica MD00G1001400.v1.1 MD04G1058900.v1.1 MD04G1059300.v1.1 MD04G1059500.v1.1 MD04G1059600.v1.1 MD04G1059800.v1.1 MD04G1061700.v1.1 MD04G1061800.v1.1 MD06G1014800.v1.1 MD06G1052900.v1.1 MD06G1055500.v1.1
prunus_persica Prupe.5G021300_v2.0.a1 Prupe.5G065900_v2.0.a1 Prupe.5G066500_v2.0.a1
pyrus_communis pycom06g04440
rosa_chinensis RchiOBHm_Chr1g0374681 RchiOBHm_Chr2g0120471 RchiOBHm_Chr2g0120711 RchiOBHm_Chr7g0203821 RchiOBHm_Chr7g0203861 RchiOBHm_Chr7g0208401 RchiOBHm_Chr7g0209011 RchiOBHm_Chr7g0213341
rosa_laevigata RLG00000001348 RLG00000002813 RLG00000003173 RLG00000003212 RLG00000003503 RLG00000022835 RLG00000026723 RLG00000035532
rosa_multiflora Rmu_co7960007.1_g000001 Rmu_co7963796.1_g000001 Rmu_co8519951.1_g000002 Rmu_sc0002038.1_g000009 Rmu_sc0004947.1_g000015 Rmu_sc0007490.1_g000005 Rmu_sc0011180.1_g000003 Rmu_sc0015273.1_g000013 Rmu_ssc0000190.1_g000014 Rmu_ssc0000372.1_g000031
rosa_roxburghii Rroxscaffold_3G00246080 Rroxscaffold_3G00249860 Rroxscaffold_3G00249870 Rroxscaffold_3G00253500 Rroxscaffold_4G00283340
rosa_rugosa Rorug01G0384300 Rorug07G0079000 Rorug07G0079000 Rorug07G0079000 Rorug07G0108300 Rorug07G0141200
rosa_samantha Rh1AG395700 Rh1BG359900 Rh1DG006600 Rh1DG390900 Rh2AG287100 Rh3BG335800 Rh3CG321100 Rh5DG116800 Rh7AG273000 Rh7BG207600 Rh7BG207800 Rh7BG237700 Rh7BG268400 Rh7CG221100 Rh7CG221300 Rh7CG254000 Rh7CG257900 Rh7CG292200 Rh7DG215700 Rh7DG215900 Rh7DG244500 Rh7DG249800 Rh7DG280700
rosa_wichuraiana Rw0G010370 Rw1G035090 Rw2G023020 Rw7G018200 Rw7G020570 Rw7G023690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 14
AclWI GGATC 1 cut(s) 242
AfaI GTAC 1 cut(s) 168
AfiI CCNNNNNNNGG 1 cut(s) 298
AgsI TTSAA 1 cut(s) 183
AluBI AGCT 1 cut(s) 155
AluI AGCT 1 cut(s) 155
AlwI GGATC 1 cut(s) 242
ApeKI GCWGC 1 cut(s) 194
AspS9I GGNCC 1 cut(s) 241
AvaII GGWCC 1 cut(s) 241
BbvI GCAGC 1 cut(s) 181
BfmI CTRYAG 1 cut(s) 121
BisI GCNGC 1 cut(s) 195
BlpI GCTNAGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 196
BmcAI AGTACT 1 cut(s) 168
Bme18I GGWCC 1 cut(s) 241
BmgT120I GGNCC 1 cut(s) 241
BmrI ACTGGG 1 cut(s) 179
BmsI GCATC 1 cut(s) 43
BmuI ACTGGG 1 cut(s) 179
Bpu1102I GCTNAGC 1 cut(s) 57
BsaJI CCNNGG 1 cut(s) 297
Bsc4I CCNNNNNNNGG 1 cut(s) 298
Bse1I ACTGG 1 cut(s) 174
Bse3DI GCAATG 1 cut(s) 227
BseDI CCNNGG 1 cut(s) 297
BseGI GGATG 1 cut(s) 58
BseLI CCNNNNNNNGG 1 cut(s) 298
BseMI GCAATG 1 cut(s) 227
BseMII CTCAG 2 cut(s) 299, 306
BseNI ACTGG 1 cut(s) 174
BseXI GCAGC 1 cut(s) 181
BslI CCNNNNNNNGG 1 cut(s) 298
Bsp143I GATC 2 cut(s) 117, 247
Bsp1720I GCTNAGC 1 cut(s) 57
BspCNI CTCAG 2 cut(s) 298, 307
BspHI TCATGA 1 cut(s) 328
BspPI GGATC 1 cut(s) 242
BsrDI GCAATG 1 cut(s) 227
BsrI ACTGG 1 cut(s) 174
BssECI CCNNGG 1 cut(s) 297
BssMI GATC 2 cut(s) 117, 247
BssT1I CCWWGG 1 cut(s) 297
Bst4CI ACNGT 1 cut(s) 245
BstAPI GCANNNNNTGC 1 cut(s) 308
BstDEI CTNAG 4 cut(s) 37, 57, 285, 315
BstF5I GGATG 1 cut(s) 58
BstKTI GATC 2 cut(s) 120, 250
BstMBI GATC 2 cut(s) 117, 247
BstMWI GCNNNNNNNGC 4 cut(s) 161, 194, 200, 308
BstSFI CTRYAG 1 cut(s) 121
BstV1I GCAGC 1 cut(s) 181
BtsCI GGATG 1 cut(s) 58
BtsIMutI CAGTG 1 cut(s) 13
CciI TCATGA 1 cut(s) 328
Cfr13I GGNCC 1 cut(s) 241
Csp6I GTAC 1 cut(s) 167
CviAII CATG 1 cut(s) 329
CviJI RGCY 5 cut(s) 61, 101, 155, 218, 319
CviKI_1 RGCY 5 cut(s) 61, 101, 155, 218, 319
CviQI GTAC 1 cut(s) 167
DdeI CTNAG 4 cut(s) 37, 57, 285, 315
DpnI GATC 2 cut(s) 119, 249
DpnII GATC 2 cut(s) 117, 247
Eco130I CCWWGG 1 cut(s) 297
Eco32I GATATC 1 cut(s) 334
Eco47I GGWCC 1 cut(s) 241
EcoRV GATATC 1 cut(s) 334
EcoT14I CCWWGG 1 cut(s) 297
ErhI CCWWGG 1 cut(s) 297
FaeI CATG 1 cut(s) 332
FaiI YATR 9 cut(s) 14, 20, 34, 50, 114, 116, 158, 309, 330
FatI CATG 1 cut(s) 328
Fnu4HI GCNGC 1 cut(s) 195
FokI GGATG 1 cut(s) 65
Fsp4HI GCNGC 1 cut(s) 195
GluI GCNGC 1 cut(s) 195
Hin1II CATG 1 cut(s) 332
Hpy188I TCNGA 1 cut(s) 316
Hpy188III TCNNGA 2 cut(s) 239, 329
HpyCH4III ACNGT 1 cut(s) 245
HpyCH4V TGCA 2 cut(s) 164, 197
HpyF10VI GCNNNNNNNGC 4 cut(s) 161, 194, 200, 308
HpyF3I CTNAG 4 cut(s) 37, 57, 285, 315
Hsp92II CATG 1 cut(s) 332
Kzo9I GATC 2 cut(s) 117, 247
LpnPI CCDG 3 cut(s) 155, 204, 224
Lsp1109I GCAGC 1 cut(s) 181
LweI GCATC 1 cut(s) 43
MalI GATC 2 cut(s) 119, 249
MboI GATC 2 cut(s) 117, 247
MluCI AATT 3 cut(s) 159, 253, 272
MnlI CCTC 3 cut(s) 91, 119, 229
MseI TTAA 1 cut(s) 264
MslI CAYNNNNRTG 1 cut(s) 113
MwoI GCNNNNNNNGC 4 cut(s) 161, 194, 200, 308
NdeII GATC 2 cut(s) 117, 247
NlaIII CATG 1 cut(s) 332
PagI TCATGA 1 cut(s) 328
PkrI GCNGC 1 cut(s) 196
PsiI TTATAA 1 cut(s) 14
PspPI GGNCC 1 cut(s) 241
RsaI GTAC 1 cut(s) 168
RsaNI GTAC 1 cut(s) 167
RseI CAYNNNNRTG 1 cut(s) 113
SaqAI TTAA 1 cut(s) 264
SatI GCNGC 1 cut(s) 195
Sau3AI GATC 2 cut(s) 117, 247
Sau96I GGNCC 1 cut(s) 241
ScaI AGTACT 1 cut(s) 168
SetI ASST 3 cut(s) 76, 113, 157
SfaNI GCATC 1 cut(s) 43
SfcI CTRYAG 1 cut(s) 121
SinI GGWCC 1 cut(s) 241
SmiMI CAYNNNNRTG 1 cut(s) 113
Sse9I AATT 3 cut(s) 159, 253, 272
StyI CCWWGG 1 cut(s) 297
TaaI ACNGT 1 cut(s) 245
TasI AATT 3 cut(s) 159, 253, 272
TatI WGTACW 1 cut(s) 166
Tru1I TTAA 1 cut(s) 264
Tru9I TTAA 1 cut(s) 264
TscAI CASTG 1 cut(s) 13
TseI GCWGC 1 cut(s) 194
TspDTI ATGAA 1 cut(s) 317
TspRI CASTG 1 cut(s) 13
VpaK11BI GGWCC 1 cut(s) 241
ZrmI AGTACT 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.