Rorug07G0141200
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
11132296 .. 11133273
978 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0141200.1

Sequence Viewer

Length: 954 bp
ATGCTCTGTGAAGGAGACATTGGAGCTGTCAAGCTCTCTATAGAAAATGGCGGCTTTGCTCTCCCCAATTACTCTGACTCTACCAGAGTTGCTTATGTCCTTCAGGGTAATGGAGTAGTTGGAATTGTTCTGCTCGAGAAGGAAGAAAAGGTCCTTCTAGTGAAGAAGGGCAATGCCATTGCCCTCCCTTTTGGAGTTATCACTTGGTGGTACAACAAGGAGGACACTGAGTTTGTGGTTCTTTTCTTAGGTGATACCAAAACAACTCACAGAAGGGGGGAGTTCACTTATTTCTATCTAAATGGTTCTAATGGCATTTTCACTGACTTCTCAACTGAGTTTGAGAGTGTTGTGAAGACTCTTGTTGGCAAGCAAACTGGCAAGGGCATTGTTAAGTTGGGGGGAGCTAGTTTGCCTGAGCCAAACAAGGAACATAGAGATGAGATGACTTTGAATTGCGAAGAGGCTCCTCTTGATGTTGATATTAAGGGGGGAGGAAGAGTTGTTGTTTTGAATACTAAGAACCTTCCTTTGGTTAGTGAGGTTGGGCTCAGTGCTGATCTTGTTAGGTTGGACAGAAATGCTATGTGCTCCCCTGGGTTTTCTTGTGACTCTGCATTGCAGGTGACTTATATTGTTAGGGGCAGTGGTCGTGTCCAAGTTGTTGGTGTCAATAGGAAGAGGATATTGGAAACAACCGTTACAGCTGGTAACTTGTTCGTCGTTCCTCGATTCTTTCTTGTTTCAAAGATTGCTGATCCAAAAGGCTTGGAATGGTTCTCCATCATCACCACTGCTAATCCAATATTCACTCATTTGGCTGGAAGTATTGGTGCTTGGAAGATGTTATCTCCTCAGGTACTTGAGGCGTCCTTCAACGTGGATTCAGACACTGAGAGATTTTATCGATCAAAGAGAACTTCTGATGCAATCTTCTTCCCTCCTTCGAAGTGA

Protein Analysis

317

Amino Acids

34.74

Weight (kDa)

6.85

Isoelectric Point (pI)

28.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 6 - 93 3.2e-14 Cupin
Cupin_1 PF00190 160 - 299 1.7e-24 Cupin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000445)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19110 AT4G19110 AT4G19110 AT5G45430 AT5G45430
fragaria_vesca FvH4_2g16890 FvH4_5g19220 FvH4_5g19340 FvH4_5g19350 FvH4_5g19360 FvH4_5g23910 FvH4_7g27810
malus_domestica MD00G1001400.v1.1 MD04G1058900.v1.1 MD04G1059300.v1.1 MD04G1059500.v1.1 MD04G1059600.v1.1 MD04G1059800.v1.1 MD04G1061700.v1.1 MD04G1061800.v1.1 MD06G1014800.v1.1 MD06G1052900.v1.1 MD06G1055500.v1.1
prunus_persica Prupe.5G021300_v2.0.a1 Prupe.5G065900_v2.0.a1 Prupe.5G066500_v2.0.a1
pyrus_communis pycom06g04440
rosa_chinensis RchiOBHm_Chr1g0374681 RchiOBHm_Chr2g0120471 RchiOBHm_Chr2g0120711 RchiOBHm_Chr7g0203821 RchiOBHm_Chr7g0203861 RchiOBHm_Chr7g0208401 RchiOBHm_Chr7g0209011 RchiOBHm_Chr7g0213341
rosa_laevigata RLG00000001348 RLG00000002813 RLG00000003173 RLG00000003212 RLG00000003503 RLG00000022835 RLG00000026723 RLG00000035532
rosa_multiflora Rmu_co7960007.1_g000001 Rmu_co7963796.1_g000001 Rmu_co8519951.1_g000002 Rmu_sc0002038.1_g000009 Rmu_sc0004947.1_g000015 Rmu_sc0007490.1_g000005 Rmu_sc0011180.1_g000003 Rmu_sc0015273.1_g000013 Rmu_ssc0000190.1_g000014 Rmu_ssc0000372.1_g000031
rosa_roxburghii Rroxscaffold_3G00246080 Rroxscaffold_3G00249860 Rroxscaffold_3G00249870 Rroxscaffold_3G00253500 Rroxscaffold_4G00283340
rosa_rugosa Rorug01G0384300 Rorug07G0079000 Rorug07G0079000 Rorug07G0079000 Rorug07G0108300 Rorug07G0141200
rosa_samantha Rh1AG395700 Rh1BG359900 Rh1DG006600 Rh1DG390900 Rh2AG287100 Rh3BG335800 Rh3CG321100 Rh5DG116800 Rh7AG273000 Rh7BG207600 Rh7BG207800 Rh7BG237700 Rh7BG268400 Rh7CG221100 Rh7CG221300 Rh7CG254000 Rh7CG257900 Rh7CG292200 Rh7DG215700 Rh7DG215900 Rh7DG244500 Rh7DG249800 Rh7DG280700
rosa_wichuraiana Rw0G010370 Rw1G035090 Rw2G023020 Rw7G018200 Rw7G020570 Rw7G023690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 613
Acc36I ACCTGC 1 cut(s) 613
AciI CCGC 1 cut(s) 51
AclWI GGATC 1 cut(s) 752
AcuI CTGAAG 1 cut(s) 86
AcyI GRCGYC 1 cut(s) 869
AdeI CACNNNGTG 1 cut(s) 207
AfaI GTAC 2 cut(s) 212, 861
AfiI CCNNNNNNNGG 1 cut(s) 532
AgsI TTSAA 4 cut(s) 454, 514, 747, 877
AjnI CCWGG 1 cut(s) 595
AjuI GAANNNNNNNTTGG 5 cut(s) 35, 515, 547, 671, 703
AluBI AGCT 4 cut(s) 26, 34, 407, 707
AluI AGCT 4 cut(s) 26, 34, 407, 707
Alw21I GWGCWC 1 cut(s) 593
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 1 cut(s) 752
AlwNI CAGNNNCTG 1 cut(s) 893
Ama87I CYCGRG 1 cut(s) 134
ArsI GACNNNNNNTTYG 2 cut(s) 215, 247
AspS9I GGNCC 1 cut(s) 151
AsuHPI GGTGA 3 cut(s) 263, 637, 781
AsuII TTCGAA 1 cut(s) 947
AvaI CYCGRG 1 cut(s) 134
AvaII GGWCC 1 cut(s) 151
AxyI CCTNAGG 1 cut(s) 855
BanII GRGCYC 1 cut(s) 552
BbsI GAAGAC 1 cut(s) 362
Bbv12I GWGCWC 1 cut(s) 593
BccI CCATC 1 cut(s) 791
BciT130I CCWGG 1 cut(s) 597
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 2 cut(s) 158, 408
BfmI CTRYAG 1 cut(s) 39
BfuAI ACCTGC 1 cut(s) 613
BisI GCNGC 1 cut(s) 52
BlsI GCNGC 1 cut(s) 53
Bme1390I CCNGG 1 cut(s) 597
Bme18I GGWCC 1 cut(s) 151
BmeT110I CYCGRG 1 cut(s) 134
BmgT120I GGNCC 1 cut(s) 151
BmiI GGNNCC 1 cut(s) 468
BmrFI CCNGG 1 cut(s) 597
BmsI GCATC 1 cut(s) 916
BpiI GAAGAC 1 cut(s) 362
Bpu10I CCTNAGC 1 cut(s) 417
Bpu14I TTCGAA 1 cut(s) 947
BpuEI CTTGAG 1 cut(s) 884
Bsa29I ATCGAT 1 cut(s) 907
BsaHI GRCGYC 1 cut(s) 869
BsaJI CCNNGG 2 cut(s) 595, 596
BsaXI ACNNNNNCTCC 2 cut(s) 486, 516
Bsc4I CCNNNNNNNGG 1 cut(s) 532
Bse1I ACTGG 1 cut(s) 382
Bse21I CCTNAGG 1 cut(s) 855
Bse3DI GCAATG 3 cut(s) 177, 178, 617
BseBI CCWGG 1 cut(s) 597
BseCI ATCGAT 1 cut(s) 907
BseDI CCNNGG 2 cut(s) 595, 596
BseLI CCNNNNNNNGG 1 cut(s) 532
BseMI GCAATG 3 cut(s) 177, 178, 617
BseMII CTCAG 6 cut(s) 219, 327, 408, 565, 869, 885
BseNI ACTGG 1 cut(s) 382
BseRI GAGGAG 2 cut(s) 459, 843
BshVI ATCGAT 1 cut(s) 907
BsiHKAI GWGCWC 1 cut(s) 593
BsiHKCI CYCGRG 1 cut(s) 134
BslI CCNNNNNNNGG 1 cut(s) 532
BsmAI GTCTC 1 cut(s) 9
BsoBI CYCGRG 1 cut(s) 134
Bsp119I TTCGAA 1 cut(s) 947
Bsp1286I GDGCHC 2 cut(s) 552, 593
Bsp143I GATC 3 cut(s) 559, 757, 908
BspACI CCGC 1 cut(s) 51
BspCNI CTCAG 6 cut(s) 220, 328, 409, 564, 868, 886
BspDI ATCGAT 1 cut(s) 907
BspLI GGNNCC 1 cut(s) 468
BspMI ACCTGC 1 cut(s) 613
BspPI GGATC 1 cut(s) 752
BspT104I TTCGAA 1 cut(s) 947
BsrDI GCAATG 3 cut(s) 177, 178, 617
BsrI ACTGG 1 cut(s) 382
BssECI CCNNGG 2 cut(s) 595, 596
BssMI GATC 3 cut(s) 559, 757, 908
BssNI GRCGYC 1 cut(s) 869
Bst2UI CCWGG 1 cut(s) 597
Bst4CI ACNGT 1 cut(s) 700
Bst6I CTCTTC 3 cut(s) 456, 493, 674
BstACI GRCGYC 1 cut(s) 869
BstBI TTCGAA 1 cut(s) 947
BstC8I GCNNGC 1 cut(s) 371
BstDEI CTNAG 8 cut(s) 228, 247, 336, 417, 519, 551, 855, 894
BstKTI GATC 3 cut(s) 562, 760, 911
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 3 cut(s) 559, 757, 908
BstNI CCWGG 1 cut(s) 597
BstSCI CCNGG 1 cut(s) 595
BstSFI CTRYAG 1 cut(s) 39
BstV2I GAAGAC 1 cut(s) 362
BstXI CCANNNNNNTGG 1 cut(s) 665
Bsu15I ATCGAT 1 cut(s) 907
Bsu36I CCTNAGG 1 cut(s) 855
BsuTUI ATCGAT 1 cut(s) 907
BtsI GCAGTG 2 cut(s) 652, 792
BtsIMutI CAGTG 6 cut(s) 225, 321, 559, 652, 792, 891
BveI ACCTGC 1 cut(s) 613
Cac8I GCNNGC 1 cut(s) 371
CaiI CAGNNNCTG 1 cut(s) 893
Cfr13I GGNCC 1 cut(s) 151
ClaI ATCGAT 1 cut(s) 907
CseI GACGC 1 cut(s) 858
Csp6I GTAC 2 cut(s) 211, 860
CviQI GTAC 2 cut(s) 211, 860
DdeI CTNAG 8 cut(s) 228, 247, 336, 417, 519, 551, 855, 894
DpnI GATC 3 cut(s) 561, 759, 910
DpnII GATC 3 cut(s) 559, 757, 908
DraIII CACNNNGTG 1 cut(s) 207
Eam1104I CTCTTC 3 cut(s) 456, 493, 674
EarI CTCTTC 3 cut(s) 456, 493, 674
Eco24I GRGCYC 1 cut(s) 552
Eco47I GGWCC 1 cut(s) 151
Eco57I CTGAAG 1 cut(s) 86
Eco81I CCTNAGG 1 cut(s) 855
Eco88I CYCGRG 1 cut(s) 134
EcoO109I RGGNCCY 1 cut(s) 151
EcoRII CCWGG 1 cut(s) 595
EcoT38I GRGCYC 1 cut(s) 552
FaiI YATR 5 cut(s) 41, 96, 435, 587, 633
Fnu4HI GCNGC 1 cut(s) 52
FriOI GRGCYC 1 cut(s) 552
Fsp4HI GCNGC 1 cut(s) 52
FspBI CTAG 2 cut(s) 158, 408
GluI GCNGC 1 cut(s) 52
HgaI GACGC 1 cut(s) 858
Hin1I GRCGYC 1 cut(s) 869
HinfI GANTC 5 cut(s) 77, 358, 611, 732, 884
HphI GGTGA 3 cut(s) 263, 637, 781
Hpy166II GTNNAC 1 cut(s) 285
Hpy188I TCNGA 3 cut(s) 76, 889, 925
Hpy188III TCNNGA 2 cut(s) 136, 473
Hpy8I GTNNAC 1 cut(s) 285
Hpy99I CGWCG 1 cut(s) 725
HpyAV CCTTC 9 cut(s) 5, 110, 133, 160, 164, 267, 536, 883, 954
HpyCH4III ACNGT 1 cut(s) 700
HpyCH4IV ACGT 1 cut(s) 879
HpyCH4V TGCA 3 cut(s) 617, 622, 929
HpyF3I CTNAG 8 cut(s) 228, 247, 336, 417, 519, 551, 855, 894
HpySE526I ACGT 1 cut(s) 879
Hsp92I GRCGYC 1 cut(s) 869
Kzo9I GATC 3 cut(s) 559, 757, 908
LmnI GCTCC 4 cut(s) 23, 404, 472, 596
LweI GCATC 1 cut(s) 916
MaeI CTAG 2 cut(s) 158, 408
MaeII ACGT 1 cut(s) 879
MaeIII GTNAC 4 cut(s) 608, 625, 700, 710
MalI GATC 3 cut(s) 561, 759, 910
MboI GATC 3 cut(s) 559, 757, 908
MboII GAAGA 9 cut(s) 155, 175, 367, 473, 510, 691, 853, 925, 928
MhlI GDGCHC 2 cut(s) 552, 593
MluCI AATT 3 cut(s) 67, 123, 454
MlyI GAGTC 3 cut(s) 71, 352, 605
MmeI TCCRAC 2 cut(s) 100, 552
MseI TTAA 2 cut(s) 393, 486
MslI CAYNNNNRTG 1 cut(s) 438
MspA1I CMGCKG 1 cut(s) 707
MspR9I CCNGG 1 cut(s) 597
MvaI CCWGG 1 cut(s) 597
NdeII GATC 3 cut(s) 559, 757, 908
NlaIV GGNNCC 1 cut(s) 468
NmuCI GTSAC 2 cut(s) 608, 625
NspV TTCGAA 1 cut(s) 947
PaeR7I CTCGAG 1 cut(s) 134
PaqCI CACCTGC 1 cut(s) 613
PasI CCCWGGG 1 cut(s) 596
PfeI GAWTC 2 cut(s) 732, 884
PkrI GCNGC 1 cut(s) 53
PleI GAGTC 3 cut(s) 71, 352, 605
PpsI GAGTC 3 cut(s) 71, 352, 605
PpuMI RGGWCCY 1 cut(s) 151
Psp5II RGGWCCY 1 cut(s) 151
Psp6I CCWGG 1 cut(s) 595
PspGI CCWGG 1 cut(s) 595
PspN4I GGNNCC 1 cut(s) 468
PspPI GGNCC 1 cut(s) 151
PspPPI RGGWCCY 1 cut(s) 151
PstNI CAGNNNCTG 1 cut(s) 893
PvuII CAGCTG 1 cut(s) 707
RsaI GTAC 2 cut(s) 212, 861
RsaNI GTAC 2 cut(s) 211, 860
RseI CAYNNNNRTG 1 cut(s) 438
SaqAI TTAA 2 cut(s) 393, 486
SatI GCNGC 1 cut(s) 52
Sau3AI GATC 3 cut(s) 559, 757, 908
Sau96I GGNCC 1 cut(s) 151
SchI GAGTC 3 cut(s) 71, 352, 605
ScrFI CCNGG 1 cut(s) 597
SduI GDGCHC 2 cut(s) 552, 593
SfaNI GCATC 1 cut(s) 916
SfcI CTRYAG 1 cut(s) 39
Sfr274I CTCGAG 1 cut(s) 134
SfuI TTCGAA 1 cut(s) 947
SinI GGWCC 1 cut(s) 151
SlaI CTCGAG 1 cut(s) 134
SmiMI CAYNNNNRTG 1 cut(s) 438
SmlI CTYRAG 2 cut(s) 134, 863
SmoI CTYRAG 2 cut(s) 134, 863
Sse9I AATT 3 cut(s) 67, 123, 454
SsiI CCGC 1 cut(s) 51
SspI AATATT 1 cut(s) 807
SspMI CTAG 2 cut(s) 158, 408
StyD4I CCNGG 1 cut(s) 595
TaaI ACNGT 1 cut(s) 700
TaiI ACGT 1 cut(s) 882
TaqI TCGA 4 cut(s) 135, 730, 907, 947
TasI AATT 3 cut(s) 67, 123, 454
TauI GCSGC 1 cut(s) 54
TfiI GAWTC 2 cut(s) 732, 884
Tru1I TTAA 2 cut(s) 393, 486
Tru9I TTAA 2 cut(s) 393, 486
TscAI CASTG 6 cut(s) 232, 328, 559, 652, 799, 898
TseFI GTSAC 2 cut(s) 608, 625
Tsp45I GTSAC 2 cut(s) 608, 625
TspRI CASTG 6 cut(s) 232, 328, 559, 652, 799, 898
VpaK11BI GGWCC 1 cut(s) 151
XhoI CTCGAG 1 cut(s) 134
XspI CTAG 2 cut(s) 158, 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.