RchiOBHm_Chr7g0209011
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000445
Physical Location & Seq
Reverse (-)
26396329 .. 26397276
948 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18707

Sequence Viewer

Length: 948 bp
ATGGAGCAATACAAGTTCATTAAGCAAGTTGGTGCGGGTAGTTTCGGGCGTGTGTATAAAGCCATAGACAAGACCACCGGGGAGTTCGTCGCCATCAAAGAGTTGAAGCACTTATGCAAGTCTTCGTATCTACAGCTACCAGAAGTGCAGGCACTGACCAAGTTGAAGCACCCAAACATTGTCAACCTCAAGGGAGTCCAGAGGCAACACGGCGTCGTCTTTTTCATCTTTGAATACATGCAAGGTAGCCTGTCCCAACTCATTCACCTCAAGCAAAGCGCTGGGCAGCTTTTCTCCGAAGCTGAAATTCGAGCCATGTGTTTCCAGGTCTTCCAAGGCCTTGTATTTATGCATGACCAACATGGCTACATTCACCGAGACCTGAAGCCGGATAACTTGTTGGTGAACCAAGGCGTGATCAAGATTTCGGACCTTGGTGCTGCAAGGGAGATCAACTCCGGCCCACCATTCAGTGATTACATCACCACACGGTGGTACAGAGCTCCTGAGATGCTGCTAGACTCTTTTATCTACAACGAAAAGGTTGACATGTGGGCAATGGGAGCGATCATGGCGGAGTTGTTTCGCATGCACCCTCTGTTTCCGGGTTCGAGTTCGCCAGATCAGATGTATCAGATTTGTAGAGTCATTGGGGCTCCAACGAGGAATACATGGAGGGAGGGATGTCTTCTTGCAAGCCATATGAACTATGAATTTCCGCAGATTGATAGTCTTGGTCTTAGAGCAGTAATGCCGACATGGGTTAGTGATTCTGCAGTAGAGCTCATCGGGTCGCTTTGCTCTTGGGACCCTTTGAAGAGGCCAACAGCTGCACAAGCTCTTCACCATCCTTTCTTCACTGGAGGCTACAAAGATTCAGCTTCTACTAATTACTCAGCTAACAACGTTGGAAATGTAAGCTGCCTGCAGCAGCCTATTCTAGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

315

Amino Acids

35.53

Weight (kDa)

8.15

Isoelectric Point (pI)

35.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 4 - 286 6.8e-65 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 5 - 197 4.7e-33 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000445)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19110 AT4G19110 AT4G19110 AT5G45430 AT5G45430
fragaria_vesca FvH4_2g16890 FvH4_5g19220 FvH4_5g19340 FvH4_5g19350 FvH4_5g19360 FvH4_5g23910 FvH4_7g27810
malus_domestica MD00G1001400.v1.1 MD04G1058900.v1.1 MD04G1059300.v1.1 MD04G1059500.v1.1 MD04G1059600.v1.1 MD04G1059800.v1.1 MD04G1061700.v1.1 MD04G1061800.v1.1 MD06G1014800.v1.1 MD06G1052900.v1.1 MD06G1055500.v1.1
prunus_persica Prupe.5G021300_v2.0.a1 Prupe.5G065900_v2.0.a1 Prupe.5G066500_v2.0.a1
pyrus_communis pycom06g04440
rosa_chinensis RchiOBHm_Chr1g0374681 RchiOBHm_Chr2g0120471 RchiOBHm_Chr2g0120711 RchiOBHm_Chr7g0203821 RchiOBHm_Chr7g0203861 RchiOBHm_Chr7g0208401 RchiOBHm_Chr7g0209011 RchiOBHm_Chr7g0213341
rosa_laevigata RLG00000001348 RLG00000002813 RLG00000003173 RLG00000003212 RLG00000003503 RLG00000022835 RLG00000026723 RLG00000035532
rosa_multiflora Rmu_co7960007.1_g000001 Rmu_co7963796.1_g000001 Rmu_co8519951.1_g000002 Rmu_sc0002038.1_g000009 Rmu_sc0004947.1_g000015 Rmu_sc0007490.1_g000005 Rmu_sc0011180.1_g000003 Rmu_sc0015273.1_g000013 Rmu_ssc0000190.1_g000014 Rmu_ssc0000372.1_g000031
rosa_roxburghii Rroxscaffold_3G00246080 Rroxscaffold_3G00249860 Rroxscaffold_3G00249870 Rroxscaffold_3G00253500 Rroxscaffold_4G00283340
rosa_rugosa Rorug01G0384300 Rorug07G0079000 Rorug07G0079000 Rorug07G0079000 Rorug07G0108300 Rorug07G0141200
rosa_samantha Rh1AG395700 Rh1BG359900 Rh1DG006600 Rh1DG390900 Rh2AG287100 Rh3BG335800 Rh3CG321100 Rh5DG116800 Rh7AG273000 Rh7BG207600 Rh7BG207800 Rh7BG237700 Rh7BG268400 Rh7CG221100 Rh7CG221300 Rh7CG254000 Rh7CG257900 Rh7CG292200 Rh7DG215700 Rh7DG215900 Rh7DG244500 Rh7DG249800 Rh7DG280700
rosa_wichuraiana Rw0G010370 Rw1G035090 Rw2G023020 Rw7G018200 Rw7G020570 Rw7G023690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 492
AciI CCGC 3 cut(s) 35, 575, 719
AclI AACGTT 1 cut(s) 906
AcsI RAATTY 2 cut(s) 306, 713
AcuI CTGAAG 1 cut(s) 404
AcyI GRCGYC 1 cut(s) 213
AdeI CACNNNGTG 1 cut(s) 492
AfaI GTAC 1 cut(s) 497
AfeI AGCGCT 1 cut(s) 280
AfiI CCNNNNNNNGG 2 cut(s) 388, 492
AflIII ACRYGT 1 cut(s) 549
AgsI TTSAA 4 cut(s) 106, 166, 233, 817
AjnI CCWGG 1 cut(s) 324
Alw21I GWGCWC 2 cut(s) 505, 786
Alw26I GTCTC 1 cut(s) 372
AlwNI CAGNNNCTG 1 cut(s) 154
Aor51HI AGCGCT 1 cut(s) 280
AoxI GGCC 3 cut(s) 337, 460, 821
ApeKI GCWGC 7 cut(s) 286, 440, 514, 830, 921, 928, 931
ApoI RAATTY 2 cut(s) 306, 713
AspLEI GCGC 1 cut(s) 281
AspS9I GGNCC 3 cut(s) 430, 461, 808
AsuC2I CCSGG 2 cut(s) 79, 606
AsuHPI GGTGA 5 cut(s) 257, 365, 415, 475, 836
AvaII GGWCC 2 cut(s) 430, 808
BanII GRGCYC 3 cut(s) 505, 658, 786
BbsI GAAGAC 3 cut(s) 114, 322, 680
Bbv12I GWGCWC 2 cut(s) 505, 786
BbvI GCAGC 7 cut(s) 298, 427, 501, 817, 908, 940, 943
BccI CCATC 2 cut(s) 101, 855
BceAI ACGGC 1 cut(s) 226
BciT130I CCWGG 1 cut(s) 326
BclI TGATCA 1 cut(s) 417
BcnI CCSGG 2 cut(s) 79, 606
BcoDI GTCTC 1 cut(s) 372
BfaI CTAG 3 cut(s) 518, 941, 946
BfmI CTRYAG 3 cut(s) 131, 774, 926
BfoI RGCGCY 1 cut(s) 282
BisI GCNGC 7 cut(s) 287, 441, 515, 831, 922, 929, 932
BlsI GCNGC 7 cut(s) 288, 442, 516, 832, 923, 930, 933
Bme1390I CCNGG 3 cut(s) 79, 326, 606
Bme18I GGWCC 2 cut(s) 430, 808
BmgT120I GGNCC 3 cut(s) 430, 461, 808
BmiI GGNNCC 3 cut(s) 657, 809, 810
BmrFI CCNGG 3 cut(s) 79, 326, 606
BmsI GCATC 1 cut(s) 501
BpiI GAAGAC 3 cut(s) 114, 322, 680
BplI GAGNNNNNCTC 2 cut(s) 440, 472
BpmI CTGGAG 1 cut(s) 882
BpuEI CTTGAG 2 cut(s) 173, 254
BpuMI CCSGG 2 cut(s) 79, 606
BsaHI GRCGYC 1 cut(s) 213
BsaI GGTCTC 1 cut(s) 372
BsaJI CCNNGG 4 cut(s) 78, 334, 409, 433
Bsc4I CCNNNNNNNGG 2 cut(s) 388, 492
Bse1I ACTGG 1 cut(s) 865
Bse3DI GCAATG 1 cut(s) 564
BseBI CCWGG 1 cut(s) 326
BseDI CCNNGG 4 cut(s) 78, 334, 409, 433
BseGI GGATG 2 cut(s) 689, 847
BseLI CCNNNNNNNGG 2 cut(s) 388, 492
BseMI GCAATG 1 cut(s) 564
BseMII CTCAG 2 cut(s) 498, 909
BseNI ACTGG 1 cut(s) 865
BseXI GCAGC 7 cut(s) 298, 427, 501, 817, 908, 940, 943
BseYI CCCAGC 1 cut(s) 281
BsgI GTGCAG 2 cut(s) 167, 816
BshFI GGCC 3 cut(s) 339, 462, 823
BsiHKAI GWGCWC 2 cut(s) 505, 786
BsiSI CCGG 4 cut(s) 78, 389, 459, 605
BslFI GGGAC 2 cut(s) 238, 821
BslI CCNNNNNNNGG 2 cut(s) 388, 492
BsmAI GTCTC 1 cut(s) 372
BsmFI GGGAC 2 cut(s) 238, 821
BsnI GGCC 3 cut(s) 339, 462, 823
Bso31I GGTCTC 1 cut(s) 372
Bsp1286I GDGCHC 3 cut(s) 505, 658, 786
Bsp143I GATC 4 cut(s) 417, 450, 567, 622
BspACI CCGC 3 cut(s) 35, 575, 719
BspANI GGCC 3 cut(s) 339, 462, 823
BspCNI CTCAG 2 cut(s) 499, 908
BspLI GGNNCC 3 cut(s) 657, 809, 810
BspMAI CTGCAG 2 cut(s) 778, 930
BspQI GCTCTTC 1 cut(s) 846
BspTNI GGTCTC 1 cut(s) 372
BsrDI GCAATG 1 cut(s) 564
BsrI ACTGG 1 cut(s) 865
BssECI CCNNGG 4 cut(s) 78, 334, 409, 433
BssMI GATC 4 cut(s) 417, 450, 567, 622
BssNI GRCGYC 1 cut(s) 213
BssT1I CCWWGG 3 cut(s) 334, 409, 433
Bst2UI CCWGG 1 cut(s) 326
Bst4CI ACNGT 1 cut(s) 492
Bst6I CTCTTC 2 cut(s) 812, 846
BstACI GRCGYC 1 cut(s) 213
BstC8I GCNNGC 4 cut(s) 150, 590, 697, 926
BstDEI CTNAG 3 cut(s) 507, 740, 895
BstF5I GGATG 2 cut(s) 689, 847
BstH2I RGCGCY 1 cut(s) 282
BstHHI GCGC 1 cut(s) 281
BstKTI GATC 4 cut(s) 420, 453, 570, 625
BstMAI GTCTC 1 cut(s) 372
BstMBI GATC 4 cut(s) 417, 450, 567, 622
BstMWI GCNNNNNNNGC 3 cut(s) 563, 572, 836
BstNI CCWGG 1 cut(s) 326
BstNSI RCATGY 3 cut(s) 241, 553, 592
BstSCI CCNGG 3 cut(s) 77, 324, 604
BstSFI CTRYAG 3 cut(s) 131, 774, 926
BstV1I GCAGC 7 cut(s) 298, 427, 501, 817, 908, 940, 943
BstV2I GAAGAC 3 cut(s) 114, 322, 680
BsuRI GGCC 3 cut(s) 339, 462, 823
BtsCI GGATG 2 cut(s) 689, 847
BtsIMutI CAGTG 3 cut(s) 152, 478, 858
Cac8I GCNNGC 4 cut(s) 150, 590, 697, 926
CaiI CAGNNNCTG 1 cut(s) 154
CfoI GCGC 1 cut(s) 281
Cfr13I GGNCC 3 cut(s) 430, 461, 808
CseI GACGC 1 cut(s) 202
Csp6I GTAC 1 cut(s) 496
CviAII CATG 9 cut(s) 238, 316, 353, 362, 550, 571, 589, 672, 759
CviQI GTAC 1 cut(s) 496
DdeI CTNAG 3 cut(s) 507, 740, 895
DpnI GATC 4 cut(s) 419, 452, 569, 624
DpnII GATC 4 cut(s) 417, 450, 567, 622
DraIII CACNNNGTG 1 cut(s) 492
Eam1104I CTCTTC 2 cut(s) 812, 846
EarI CTCTTC 2 cut(s) 812, 846
EciI GGCGGA 1 cut(s) 590
Ecl136II GAGCTC 2 cut(s) 503, 784
Eco130I CCWWGG 3 cut(s) 334, 409, 433
Eco147I AGGCCT 1 cut(s) 339
Eco24I GRGCYC 3 cut(s) 505, 658, 786
Eco31I GGTCTC 1 cut(s) 372
Eco47I GGWCC 2 cut(s) 430, 808
Eco47III AGCGCT 1 cut(s) 280
Eco53kI GAGCTC 2 cut(s) 503, 784
Eco57I CTGAAG 1 cut(s) 404
EcoICRI GAGCTC 2 cut(s) 503, 784
EcoO109I RGGNCCY 1 cut(s) 808
EcoRII CCWGG 1 cut(s) 324
EcoT14I CCWWGG 3 cut(s) 334, 409, 433
EcoT22I ATGCAT 1 cut(s) 354
EcoT38I GRGCYC 3 cut(s) 505, 658, 786
ErhI CCWWGG 3 cut(s) 334, 409, 433
FaeI CATG 9 cut(s) 241, 319, 356, 365, 553, 574, 592, 675, 762
FaqI GGGAC 2 cut(s) 238, 821
FatI CATG 9 cut(s) 237, 315, 352, 361, 549, 570, 588, 671, 758
FauI CCCGC 1 cut(s) 28
FauNDI CATATG 1 cut(s) 702
FbaI TGATCA 1 cut(s) 417
Fnu4HI GCNGC 7 cut(s) 287, 441, 515, 831, 922, 929, 932
FokI GGATG 2 cut(s) 696, 834
FriOI GRGCYC 3 cut(s) 505, 658, 786
Fsp4HI GCNGC 7 cut(s) 287, 441, 515, 831, 922, 929, 932
FspBI CTAG 3 cut(s) 518, 941, 946
GlaI GCGC 1 cut(s) 280
GluI GCNGC 7 cut(s) 287, 441, 515, 831, 922, 929, 932
GsaI CCCAGC 1 cut(s) 285
GsuI CTGGAG 1 cut(s) 882
HaeII RGCGCY 1 cut(s) 282
HaeIII GGCC 3 cut(s) 339, 462, 823
HapII CCGG 4 cut(s) 78, 389, 459, 605
HgaI GACGC 1 cut(s) 202
HhaI GCGC 1 cut(s) 281
Hin1I GRCGYC 1 cut(s) 213
Hin1II CATG 9 cut(s) 241, 319, 356, 365, 553, 574, 592, 675, 762
Hin6I GCGC 1 cut(s) 279
HinP1I GCGC 1 cut(s) 279
HincII GTYRAC 2 cut(s) 184, 547
HindII GTYRAC 2 cut(s) 184, 547
HinfI GANTC 5 cut(s) 195, 521, 645, 770, 875
HpaII CCGG 4 cut(s) 78, 389, 459, 605
HphI GGTGA 5 cut(s) 257, 365, 415, 475, 836
Hpy166II GTNNAC 3 cut(s) 184, 406, 547
Hpy188I TCNGA 4 cut(s) 298, 430, 627, 636
Hpy188III TCNNGA 3 cut(s) 199, 421, 506
Hpy8I GTNNAC 3 cut(s) 184, 406, 547
Hpy99I CGWCG 2 cut(s) 92, 218
HpyCH4III ACNGT 1 cut(s) 492
HpyCH4IV ACGT 1 cut(s) 906
HpyF10VI GCNNNNNNNGC 3 cut(s) 563, 572, 836
HpyF3I CTNAG 3 cut(s) 507, 740, 895
HpySE526I ACGT 1 cut(s) 906
Hsp92I GRCGYC 1 cut(s) 213
Hsp92II CATG 9 cut(s) 241, 319, 356, 365, 553, 574, 592, 675, 762
HspAI GCGC 1 cut(s) 279
KflI GGGWCCC 1 cut(s) 808
Ksp22I TGATCA 1 cut(s) 417
Kzo9I GATC 4 cut(s) 417, 450, 567, 622
LguI GCTCTTC 1 cut(s) 846
LmnI GCTCC 4 cut(s) 4, 508, 563, 661
Lsp1109I GCAGC 7 cut(s) 298, 427, 501, 817, 908, 940, 943
LweI GCATC 1 cut(s) 501
MaeI CTAG 3 cut(s) 518, 941, 946
MaeII ACGT 1 cut(s) 906
MalI GATC 4 cut(s) 419, 452, 569, 624
MboI GATC 4 cut(s) 417, 450, 567, 622
MboII GAAGA 6 cut(s) 114, 322, 680, 829, 833, 847
MhlI GDGCHC 3 cut(s) 505, 658, 786
MluCI AATT 3 cut(s) 306, 713, 889
MlyI GAGTC 3 cut(s) 204, 515, 654
MmeI TCCRAC 2 cut(s) 683, 889
MnlI CCTC 9 cut(s) 195, 197, 278, 606, 657, 669, 673, 813, 857
Mph1103I ATGCAT 1 cut(s) 354
MseI TTAA 1 cut(s) 21
MspA1I CMGCKG 1 cut(s) 830
MspI CCGG 4 cut(s) 78, 389, 459, 605
MspR9I CCNGG 3 cut(s) 79, 326, 606
MvaI CCWGG 1 cut(s) 326
MwoI GCNNNNNNNGC 3 cut(s) 563, 572, 836
NciI CCSGG 2 cut(s) 79, 606
NdeI CATATG 1 cut(s) 702
NdeII GATC 4 cut(s) 417, 450, 567, 622
NlaIII CATG 9 cut(s) 241, 319, 356, 365, 553, 574, 592, 675, 762
NlaIV GGNNCC 3 cut(s) 657, 809, 810
NsiI ATGCAT 1 cut(s) 354
NspI RCATGY 3 cut(s) 241, 553, 592
PaeI GCATGC 1 cut(s) 592
PceI AGGCCT 1 cut(s) 339
PciI ACATGT 1 cut(s) 549
PciSI GCTCTTC 1 cut(s) 846
PfeI GAWTC 2 cut(s) 770, 875
PflMI CCANNNNNTGG 1 cut(s) 492
PkrI GCNGC 7 cut(s) 288, 442, 516, 832, 923, 930, 933
PleI GAGTC 3 cut(s) 203, 515, 653
PpsI GAGTC 3 cut(s) 203, 515, 653
PpuMI RGGWCCY 1 cut(s) 808
PscI ACATGT 1 cut(s) 549
Psp124BI GAGCTC 2 cut(s) 505, 786
Psp1406I AACGTT 1 cut(s) 906
Psp5II RGGWCCY 1 cut(s) 808
Psp6I CCWGG 1 cut(s) 324
PspFI CCCAGC 1 cut(s) 281
PspGI CCWGG 1 cut(s) 324
PspN4I GGNNCC 3 cut(s) 657, 809, 810
PspPI GGNCC 3 cut(s) 430, 461, 808
PspPPI RGGWCCY 1 cut(s) 808
PstI CTGCAG 2 cut(s) 778, 930
PstNI CAGNNNCTG 1 cut(s) 154
PvuII CAGCTG 1 cut(s) 830
RsaI GTAC 1 cut(s) 497
RsaNI GTAC 1 cut(s) 496
SacI GAGCTC 2 cut(s) 505, 786
SapI GCTCTTC 1 cut(s) 846
SaqAI TTAA 1 cut(s) 21
SatI GCNGC 7 cut(s) 287, 441, 515, 831, 922, 929, 932
Sau3AI GATC 4 cut(s) 417, 450, 567, 622
Sau96I GGNCC 3 cut(s) 430, 461, 808
SchI GAGTC 3 cut(s) 204, 515, 654
ScrFI CCNGG 3 cut(s) 79, 326, 606
SduI GDGCHC 3 cut(s) 505, 658, 786
SfaNI GCATC 1 cut(s) 501
SfcI CTRYAG 3 cut(s) 131, 774, 926
SinI GGWCC 2 cut(s) 430, 808
SmlI CTYRAG 2 cut(s) 188, 269
SmoI CTYRAG 2 cut(s) 188, 269
SphI GCATGC 1 cut(s) 592
Sse9I AATT 3 cut(s) 306, 713, 889
SseBI AGGCCT 1 cut(s) 339
SsiI CCGC 3 cut(s) 35, 575, 719
SspMI CTAG 3 cut(s) 518, 941, 946
SstI GAGCTC 2 cut(s) 505, 786
StuI AGGCCT 1 cut(s) 339
StyD4I CCNGG 3 cut(s) 77, 324, 604
StyI CCWWGG 3 cut(s) 334, 409, 433
TaaI ACNGT 1 cut(s) 492
TaiI ACGT 1 cut(s) 909
TaqI TCGA 2 cut(s) 310, 611
TasI AATT 3 cut(s) 306, 713, 889
TfiI GAWTC 2 cut(s) 770, 875
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
TscAI CASTG 3 cut(s) 159, 478, 865
TseI GCWGC 7 cut(s) 286, 440, 514, 830, 921, 928, 931
TspDTI ATGAA 4 cut(s) 7, 214, 719, 726
TspRI CASTG 3 cut(s) 159, 478, 865
Van91I CCANNNNNTGG 1 cut(s) 492
VpaK11BI GGWCC 2 cut(s) 430, 808
XapI RAATTY 2 cut(s) 306, 713
XceI RCATGY 3 cut(s) 241, 553, 592
XspI CTAG 3 cut(s) 518, 941, 946
Zsp2I ATGCAT 1 cut(s) 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.