Rroxscaffold_3G00253500
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000445
Physical Location & Seq
Reverse (-)
47544842 .. 47545819
978 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00253500.1

Sequence Viewer

Length: 978 bp
ATGGATAGATACGAGATAGTAAGGCTGGTTGGTGAGGGGAGTTTTGGGCGGGTGTTTCAGGCCATCGACAACTACTCCCGTCAGTTTGTGGCGATCAAATGGCTGAAGCCAGTCGGCGATCCGTGGGCATATTTACCGGAAGTCCGTGCTCTCACTAGGTTGGAGCACCCCAATATAGTGAGCCTCAAGGGTGTTGAATACCAAGACGACGACGTCTTCTTTGTTTTTGAGTACATGGAGGGGAGCCTTCGTGATCTTATTAATGAGAGGCTGAGCAAGAGAATCCCTTTCTCGGAGGCCGAAATCCGATCATTGAGCCGTCAGGTGTTGCAAGGCCTTGAATACATGCATCACCAACGCGGGTTCATGCACCGGGATCTGAAGCCGGAGAATCTTTTGGTGAACAAGGACGACATCAAGATTTCGGATCTGGGTACTGCTACGGAGATCGACTGCGGCGGCCAAGTCCATCATCATTACGTCACCACAAGGTGGTACAGAGCCCCCGAGATGCTGTTTCGAGTCTTCTTGAAAAACGAGGGGCTTCGACCTTTTGAGTACGATGAGAAGGTTGACATGTGGGCAATGGGGACGATCATGGCAGAGCTATTTCTGATGCGGCCTCTGTTCGTGGGTGACGATTCGCCGGATCAGCTGTACAAAATCTGCGAAGTCATAGGGGCTCCTCCTTCTAGGGATTCACGGACGATGCCTAAACTTGGGCCGGAGAATGGTGTGGGTCTTCGAGCATTGATGCCATATGCCAGTGAATCGGCCATCGATCTCATAGAGTCTCTTTGTTCTTGGGACCCTTCGAAAAGGCCTAGTGCTAAGGAAGCTCTCCAGCATCCCTTCTTCAAGAGAGGGCAGAATGTTGACGCTCCTCCTGGGTTCTCATATTGCACTCATACAAGGAACAGTGTGGTTCCAAAGATGAGAGAGTTATCAACCATGCAGCCAATACTGGGAGCCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

325

Amino Acids

37.44

Weight (kDa)

6.03

Isoelectric Point (pI)

50.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 4 - 286 8.8e-65 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 6 - 205 1.5e-28 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000445)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19110 AT4G19110 AT4G19110 AT5G45430 AT5G45430
fragaria_vesca FvH4_2g16890 FvH4_5g19220 FvH4_5g19340 FvH4_5g19350 FvH4_5g19360 FvH4_5g23910 FvH4_7g27810
malus_domestica MD00G1001400.v1.1 MD04G1058900.v1.1 MD04G1059300.v1.1 MD04G1059500.v1.1 MD04G1059600.v1.1 MD04G1059800.v1.1 MD04G1061700.v1.1 MD04G1061800.v1.1 MD06G1014800.v1.1 MD06G1052900.v1.1 MD06G1055500.v1.1
prunus_persica Prupe.5G021300_v2.0.a1 Prupe.5G065900_v2.0.a1 Prupe.5G066500_v2.0.a1
pyrus_communis pycom06g04440
rosa_chinensis RchiOBHm_Chr1g0374681 RchiOBHm_Chr2g0120471 RchiOBHm_Chr2g0120711 RchiOBHm_Chr7g0203821 RchiOBHm_Chr7g0203861 RchiOBHm_Chr7g0208401 RchiOBHm_Chr7g0209011 RchiOBHm_Chr7g0213341
rosa_laevigata RLG00000001348 RLG00000002813 RLG00000003173 RLG00000003212 RLG00000003503 RLG00000022835 RLG00000026723 RLG00000035532
rosa_multiflora Rmu_co7960007.1_g000001 Rmu_co7963796.1_g000001 Rmu_co8519951.1_g000002 Rmu_sc0002038.1_g000009 Rmu_sc0004947.1_g000015 Rmu_sc0007490.1_g000005 Rmu_sc0011180.1_g000003 Rmu_sc0015273.1_g000013 Rmu_ssc0000190.1_g000014 Rmu_ssc0000372.1_g000031
rosa_roxburghii Rroxscaffold_3G00246080 Rroxscaffold_3G00249860 Rroxscaffold_3G00249870 Rroxscaffold_3G00253500 Rroxscaffold_4G00283340
rosa_rugosa Rorug01G0384300 Rorug07G0079000 Rorug07G0079000 Rorug07G0079000 Rorug07G0108300 Rorug07G0141200
rosa_samantha Rh1AG395700 Rh1BG359900 Rh1DG006600 Rh1DG390900 Rh2AG287100 Rh3BG335800 Rh3CG321100 Rh5DG116800 Rh7AG273000 Rh7BG207600 Rh7BG207800 Rh7BG237700 Rh7BG268400 Rh7CG221100 Rh7CG221300 Rh7CG254000 Rh7CG257900 Rh7CG292200 Rh7DG215700 Rh7DG215900 Rh7DG244500 Rh7DG249800 Rh7DG280700
rosa_wichuraiana Rw0G010370 Rw1G035090 Rw2G023020 Rw7G018200 Rw7G020570 Rw7G023690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 212
AatII GACGTC 1 cut(s) 216
AccB7I CCANNNNNTGG 1 cut(s) 492
AccII CGCG 1 cut(s) 360
AciI CCGC 5 cut(s) 49, 360, 456, 459, 619
AclWI GGATC 4 cut(s) 113, 384, 435, 657
AcoI YGGCCR 2 cut(s) 460, 774
AcuI CTGAAG 2 cut(s) 125, 401
AcyI GRCGYC 1 cut(s) 213
AdeI CACNNNGTG 1 cut(s) 492
AfaI GTAC 5 cut(s) 233, 436, 497, 560, 659
AfiI CCNNNNNNNGG 5 cut(s) 292, 492, 719, 731, 965
AflIII ACRYGT 1 cut(s) 576
AgsI TTSAA 4 cut(s) 197, 341, 532, 859
AjnI CCWGG 1 cut(s) 886
AluBI AGCT 3 cut(s) 607, 655, 839
AluI AGCT 3 cut(s) 607, 655, 839
Alw21I GWGCWC 2 cut(s) 151, 168
Alw26I GTCTC 1 cut(s) 798
AlwI GGATC 4 cut(s) 113, 384, 435, 657
Ama87I CYCGRG 1 cut(s) 506
AoxI GGCC 8 cut(s) 60, 297, 334, 460, 620, 722, 774, 821
ApeKI GCWGC 1 cut(s) 955
ArsI GACNNNNNNTTYG 2 cut(s) 203, 235
AseI ATTAAT 1 cut(s) 261
AspS9I GGNCC 2 cut(s) 722, 808
AsuC2I CCSGG 1 cut(s) 374
AsuHPI GGTGA 5 cut(s) 44, 344, 412, 475, 647
AsuII TTCGAA 1 cut(s) 815
AvaI CYCGRG 1 cut(s) 506
AvaII GGWCC 1 cut(s) 808
BanII GRGCYC 2 cut(s) 505, 685
BbsI GAAGAC 3 cut(s) 208, 517, 734
Bbv12I GWGCWC 2 cut(s) 151, 168
BbvI GCAGC 1 cut(s) 967
BccI CCATC 3 cut(s) 71, 477, 785
BceAI ACGGC 1 cut(s) 303
BciT130I CCWGG 1 cut(s) 888
BcnI CCSGG 1 cut(s) 374
BcoDI GTCTC 1 cut(s) 798
BfaI CTAG 3 cut(s) 156, 693, 825
BisI GCNGC 4 cut(s) 457, 460, 620, 956
BlpI GCTNAGC 1 cut(s) 272
BlsI GCNGC 4 cut(s) 458, 461, 621, 957
Bme1390I CCNGG 2 cut(s) 374, 888
Bme18I GGWCC 1 cut(s) 808
BmeT110I CYCGRG 1 cut(s) 506
BmgT120I GGNCC 2 cut(s) 722, 808
BmiI GGNNCC 6 cut(s) 245, 684, 809, 810, 927, 970
BmrFI CCNGG 2 cut(s) 374, 888
BmrI ACTGGG 1 cut(s) 974
BmsI GCATC 6 cut(s) 358, 501, 606, 699, 744, 856
BmuI ACTGGG 1 cut(s) 974
BpiI GAAGAC 3 cut(s) 208, 517, 734
BpmI CTGGAG 1 cut(s) 827
Bpu10I CCTNAGC 1 cut(s) 831
Bpu1102I GCTNAGC 1 cut(s) 272
Bpu14I TTCGAA 1 cut(s) 815
BpuEI CTTGAG 1 cut(s) 170
BpuMI CCSGG 1 cut(s) 374
Bsa29I ATCGAT 1 cut(s) 780
BsaHI GRCGYC 1 cut(s) 213
BsaJI CCNNGG 2 cut(s) 122, 887
BsaWI WCCGGW 1 cut(s) 136
BsaXI ACNNNNNCTCC 4 cut(s) 59, 89, 235, 265
Bsc4I CCNNNNNNNGG 5 cut(s) 292, 492, 719, 731, 965
Bse1I ACTGG 3 cut(s) 110, 765, 969
Bse3DI GCAATG 1 cut(s) 591
BseBI CCWGG 1 cut(s) 888
BseCI ATCGAT 1 cut(s) 780
BseDI CCNNGG 2 cut(s) 122, 887
BseGI GGATG 1 cut(s) 847
BseLI CCNNNNNNNGG 5 cut(s) 292, 492, 719, 731, 965
BseMI GCAATG 1 cut(s) 591
BseMII CTCAG 1 cut(s) 263
BseNI ACTGG 3 cut(s) 110, 765, 969
BseRI GAGGAG 2 cut(s) 675, 873
BseXI GCAGC 1 cut(s) 967
Bsh1236I CGCG 1 cut(s) 360
BshFI GGCC 8 cut(s) 62, 299, 336, 462, 622, 724, 776, 823
BshVI ATCGAT 1 cut(s) 780
BsiHKAI GWGCWC 2 cut(s) 151, 168
BsiHKCI CYCGRG 1 cut(s) 506
BsiSI CCGG 5 cut(s) 137, 373, 386, 647, 725
BslFI GGGAC 2 cut(s) 604, 821
BslI CCNNNNNNNGG 5 cut(s) 292, 492, 719, 731, 965
BsmAI GTCTC 1 cut(s) 798
BsmFI GGGAC 2 cut(s) 604, 821
BsnI GGCC 8 cut(s) 62, 299, 336, 462, 622, 724, 776, 823
BsoBI CYCGRG 1 cut(s) 506
Bsp119I TTCGAA 1 cut(s) 815
Bsp1286I GDGCHC 4 cut(s) 151, 168, 505, 685
Bsp1407I TGTACA 1 cut(s) 657
Bsp1720I GCTNAGC 1 cut(s) 272
BspACI CCGC 5 cut(s) 49, 360, 456, 459, 619
BspANI GGCC 8 cut(s) 62, 299, 336, 462, 622, 724, 776, 823
BspCNI CTCAG 1 cut(s) 264
BspDI ATCGAT 1 cut(s) 780
BspFNI CGCG 1 cut(s) 360
BspLI GGNNCC 6 cut(s) 245, 684, 809, 810, 927, 970
BspPI GGATC 4 cut(s) 113, 384, 435, 657
BspT104I TTCGAA 1 cut(s) 815
BsrDI GCAATG 1 cut(s) 591
BsrGI TGTACA 1 cut(s) 657
BsrI ACTGG 3 cut(s) 110, 765, 969
BssECI CCNNGG 2 cut(s) 122, 887
BssNI GRCGYC 1 cut(s) 213
Bst2UI CCWGG 1 cut(s) 888
Bst4CI ACNGT 1 cut(s) 920
BstACI GRCGYC 1 cut(s) 213
BstAUI TGTACA 1 cut(s) 657
BstBI TTCGAA 1 cut(s) 815
BstDEI CTNAG 2 cut(s) 272, 831
BstDSI CCRYGG 1 cut(s) 122
BstF5I GGATG 1 cut(s) 847
BstFNI CGCG 1 cut(s) 360
BstMAI GTCTC 1 cut(s) 798
BstMWI GCNNNNNNNGC 2 cut(s) 652, 836
BstNI CCWGG 1 cut(s) 888
BstNSI RCATGY 2 cut(s) 349, 580
BstSCI CCNGG 2 cut(s) 372, 886
BstUI CGCG 1 cut(s) 360
BstV1I GCAGC 1 cut(s) 967
BstV2I GAAGAC 3 cut(s) 208, 517, 734
BstX2I RGATCY 2 cut(s) 376, 427
BstYI RGATCY 2 cut(s) 376, 427
Bsu15I ATCGAT 1 cut(s) 780
BsuRI GGCC 8 cut(s) 62, 299, 336, 462, 622, 724, 776, 823
BsuTUI ATCGAT 1 cut(s) 780
BtgI CCRYGG 1 cut(s) 122
BtsCI GGATG 1 cut(s) 847
BtsIMutI CAGTG 2 cut(s) 772, 925
Cfr13I GGNCC 2 cut(s) 722, 808
ClaI ATCGAT 1 cut(s) 780
CseI GACGC 1 cut(s) 887
Csp6I GTAC 5 cut(s) 232, 435, 496, 559, 658
CviAII CATG 6 cut(s) 235, 346, 367, 577, 598, 952
CviQI GTAC 5 cut(s) 232, 435, 496, 559, 658
DdeI CTNAG 2 cut(s) 272, 831
DraIII CACNNNGTG 1 cut(s) 492
DrdI GACNNNNNNGTC 1 cut(s) 212
DseDI GACNNNNNNGTC 1 cut(s) 212
EaeI YGGCCR 2 cut(s) 460, 774
Eco147I AGGCCT 2 cut(s) 336, 823
Eco24I GRGCYC 2 cut(s) 505, 685
Eco47I GGWCC 1 cut(s) 808
Eco57I CTGAAG 2 cut(s) 125, 401
Eco88I CYCGRG 1 cut(s) 506
EcoO109I RGGNCCY 1 cut(s) 808
EcoRII CCWGG 1 cut(s) 886
EcoT22I ATGCAT 1 cut(s) 351
EcoT38I GRGCYC 2 cut(s) 505, 685
FaeI CATG 6 cut(s) 238, 349, 370, 580, 601, 955
FaqI GGGAC 2 cut(s) 604, 821
FatI CATG 6 cut(s) 234, 345, 366, 576, 597, 951
FauI CCCGC 2 cut(s) 42, 353
FauNDI CATATG 1 cut(s) 760
Fnu4HI GCNGC 4 cut(s) 457, 460, 620, 956
FokI GGATG 1 cut(s) 834
FriOI GRGCYC 2 cut(s) 505, 685
Fsp4HI GCNGC 4 cut(s) 457, 460, 620, 956
FspBI CTAG 3 cut(s) 156, 693, 825
GluI GCNGC 4 cut(s) 457, 460, 620, 956
GsuI CTGGAG 1 cut(s) 827
HaeIII GGCC 8 cut(s) 62, 299, 336, 462, 622, 724, 776, 823
HapII CCGG 5 cut(s) 137, 373, 386, 647, 725
HgaI GACGC 1 cut(s) 887
Hin1I GRCGYC 1 cut(s) 213
Hin1II CATG 6 cut(s) 238, 349, 370, 580, 601, 955
HincII GTYRAC 2 cut(s) 574, 877
HindII GTYRAC 2 cut(s) 574, 877
HinfI GANTC 7 cut(s) 282, 391, 522, 641, 698, 770, 791
HpaII CCGG 5 cut(s) 137, 373, 386, 647, 725
HphI GGTGA 5 cut(s) 44, 344, 412, 475, 647
Hpy166II GTNNAC 3 cut(s) 403, 574, 877
Hpy188I TCNGA 5 cut(s) 295, 308, 381, 427, 615
Hpy188III TCNNGA 4 cut(s) 251, 418, 529, 859
Hpy8I GTNNAC 3 cut(s) 403, 574, 877
Hpy99I CGWCG 2 cut(s) 212, 215
HpyAV CCTTC 5 cut(s) 257, 562, 699, 822, 862
HpyCH4III ACNGT 1 cut(s) 920
HpyCH4IV ACGT 2 cut(s) 213, 480
HpyCH4V TGCA 5 cut(s) 331, 349, 370, 903, 955
HpyF10VI GCNNNNNNNGC 2 cut(s) 652, 836
HpyF3I CTNAG 2 cut(s) 272, 831
HpySE526I ACGT 2 cut(s) 213, 480
Hsp92I GRCGYC 1 cut(s) 213
Hsp92II CATG 6 cut(s) 238, 349, 370, 580, 601, 955
KflI GGGWCCC 1 cut(s) 808
LmnI GCTCC 5 cut(s) 163, 243, 688, 886, 968
Lsp1109I GCAGC 1 cut(s) 967
LweI GCATC 6 cut(s) 358, 501, 606, 699, 744, 856
MaeI CTAG 3 cut(s) 156, 693, 825
MaeII ACGT 2 cut(s) 213, 480
MaeIII GTNAC 2 cut(s) 481, 635
MboII GAAGA 4 cut(s) 208, 517, 734, 847
MflI RGATCY 2 cut(s) 376, 427
MhlI GDGCHC 4 cut(s) 151, 168, 505, 685
MlyI GAGTC 2 cut(s) 531, 800
MmeI TCCRAC 1 cut(s) 141
Mph1103I ATGCAT 1 cut(s) 351
MseI TTAA 1 cut(s) 261
MspA1I CMGCKG 1 cut(s) 655
MspI CCGG 5 cut(s) 137, 373, 386, 647, 725
MspR9I CCNGG 2 cut(s) 374, 888
MvaI CCWGG 1 cut(s) 888
MvnI CGCG 1 cut(s) 360
MwoI GCNNNNNNNGC 2 cut(s) 652, 836
NciI CCSGG 1 cut(s) 374
NdeI CATATG 1 cut(s) 760
NlaIII CATG 6 cut(s) 238, 349, 370, 580, 601, 955
NlaIV GGNNCC 6 cut(s) 245, 684, 809, 810, 927, 970
NmuCI GTSAC 2 cut(s) 481, 635
NsiI ATGCAT 1 cut(s) 351
NspI RCATGY 2 cut(s) 349, 580
NspV TTCGAA 1 cut(s) 815
PceI AGGCCT 2 cut(s) 336, 823
PciI ACATGT 1 cut(s) 576
PcsI WCGNNNNNNNCGW 1 cut(s) 636
PfeI GAWTC 5 cut(s) 282, 391, 641, 698, 770
PflFI GACNNNGTC 1 cut(s) 212
PflMI CCANNNNNTGG 1 cut(s) 492
PkrI GCNGC 4 cut(s) 458, 461, 621, 957
PleI GAGTC 2 cut(s) 530, 799
PpsI GAGTC 2 cut(s) 530, 799
PpuMI RGGWCCY 1 cut(s) 808
PscI ACATGT 1 cut(s) 576
PshBI ATTAAT 1 cut(s) 261
Psp5II RGGWCCY 1 cut(s) 808
Psp6I CCWGG 1 cut(s) 886
PspGI CCWGG 1 cut(s) 886
PspN4I GGNNCC 6 cut(s) 245, 684, 809, 810, 927, 970
PspPI GGNCC 2 cut(s) 722, 808
PspPPI RGGWCCY 1 cut(s) 808
PsuI RGATCY 2 cut(s) 376, 427
PsyI GACNNNGTC 1 cut(s) 212
PvuII CAGCTG 1 cut(s) 655
RsaI GTAC 5 cut(s) 233, 436, 497, 560, 659
RsaNI GTAC 5 cut(s) 232, 435, 496, 559, 658
SaqAI TTAA 1 cut(s) 261
SatI GCNGC 4 cut(s) 457, 460, 620, 956
Sau96I GGNCC 2 cut(s) 722, 808
SchI GAGTC 2 cut(s) 531, 800
ScrFI CCNGG 2 cut(s) 374, 888
SduI GDGCHC 4 cut(s) 151, 168, 505, 685
SfaNI GCATC 6 cut(s) 358, 501, 606, 699, 744, 856
SfuI TTCGAA 1 cut(s) 815
SinI GGWCC 1 cut(s) 808
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
SseBI AGGCCT 2 cut(s) 336, 823
SsiI CCGC 5 cut(s) 49, 360, 456, 459, 619
SspMI CTAG 3 cut(s) 156, 693, 825
StuI AGGCCT 2 cut(s) 336, 823
StyD4I CCNGG 2 cut(s) 372, 886
TaaI ACNGT 1 cut(s) 920
TaiI ACGT 2 cut(s) 216, 483
TaqI TCGA 7 cut(s) 66, 450, 520, 547, 745, 780, 815
TatI WGTACW 2 cut(s) 231, 657
TauI GCSGC 3 cut(s) 459, 462, 622
TfiI GAWTC 5 cut(s) 282, 391, 641, 698, 770
Tru1I TTAA 1 cut(s) 261
Tru9I TTAA 1 cut(s) 261
TscAI CASTG 2 cut(s) 772, 925
TseFI GTSAC 2 cut(s) 481, 635
TseI GCWGC 1 cut(s) 955
Tsp45I GTSAC 2 cut(s) 481, 635
TspDTI ATGAA 1 cut(s) 355
TspGWI ACGGA 4 cut(s) 111, 134, 458, 718
TspRI CASTG 2 cut(s) 772, 925
Tth111I GACNNNGTC 1 cut(s) 212
Van91I CCANNNNNTGG 1 cut(s) 492
VpaK11BI GGWCC 1 cut(s) 808
VspI ATTAAT 1 cut(s) 261
XceI RCATGY 2 cut(s) 349, 580
XspI CTAG 3 cut(s) 156, 693, 825
ZraI GACGTC 1 cut(s) 214
Zsp2I ATGCAT 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.