MD06G1055500.v1.1
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0000445
Physical Location & Seq
Reverse (-)
8312500 .. 8313114
615 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1055500.v1.1.491

Sequence Viewer

Length: 615 bp
ATGTTTCATGGCCTGGATTATATGCACAGAAACGGCTATTTCCACGGTGATTTGAAGACCGCTAACGTCTTGTTTAACGATGGTTCCCGTGTCGTCAAGATTGCAGATTTGGGTTCTGCTATGGAGATCGATTCACCCCCCCCCTATACAGACTACGTCACCACTCGCCCTTATCGAGCTCCTGAGGTGTTGCTTCAGTCAGGCCTCTACGGTCCTAAGGTCGATATGTGGGCAATGGGCGCCATCATGGCAGAGCTGTTTTCATTCCGGACTCTGTTTCCCGGTCAAAGTGCTGATGATCAGATGTTAAAGATTTGCAGCGTCATTGGCAGTCCAACTTGGGATACACGGCCAGAGGGACATATTCTTGCCCAAAACTTGAACTATGAGTTTCCACAACTTCGCAGTGTTGGTCTATCTGCGATGGTTCCTTCCGCAAGCAGATCTGCCGTCCAGCTGATTTCTTCCCTTTGTTCTTGGGACCCTTCCGCAAGGCCTACTGCTGCTGAAGCACTCAAGCATCCCTTCTTCGTTGGCAACCACAAGATTCCACGCGCCATCCCTTTGAGACAAAGCAATATTCGGCTTGCGTCCAATTCTCTTATTTTCGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

205

Amino Acids

22.59

Weight (kDa)

7.83

Isoelectric Point (pI)

46.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 2 - 177 6.8e-38 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 3 - 89 6.7e-12 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000445)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19110 AT4G19110 AT4G19110 AT5G45430 AT5G45430
fragaria_vesca FvH4_2g16890 FvH4_5g19220 FvH4_5g19340 FvH4_5g19350 FvH4_5g19360 FvH4_5g23910 FvH4_7g27810
malus_domestica MD00G1001400.v1.1 MD04G1058900.v1.1 MD04G1059300.v1.1 MD04G1059500.v1.1 MD04G1059600.v1.1 MD04G1059800.v1.1 MD04G1061700.v1.1 MD04G1061800.v1.1 MD06G1014800.v1.1 MD06G1052900.v1.1 MD06G1055500.v1.1
prunus_persica Prupe.5G021300_v2.0.a1 Prupe.5G065900_v2.0.a1 Prupe.5G066500_v2.0.a1
pyrus_communis pycom06g04440
rosa_chinensis RchiOBHm_Chr1g0374681 RchiOBHm_Chr2g0120471 RchiOBHm_Chr2g0120711 RchiOBHm_Chr7g0203821 RchiOBHm_Chr7g0203861 RchiOBHm_Chr7g0208401 RchiOBHm_Chr7g0209011 RchiOBHm_Chr7g0213341
rosa_laevigata RLG00000001348 RLG00000002813 RLG00000003173 RLG00000003212 RLG00000003503 RLG00000022835 RLG00000026723 RLG00000035532
rosa_multiflora Rmu_co7960007.1_g000001 Rmu_co7963796.1_g000001 Rmu_co8519951.1_g000002 Rmu_sc0002038.1_g000009 Rmu_sc0004947.1_g000015 Rmu_sc0007490.1_g000005 Rmu_sc0011180.1_g000003 Rmu_sc0015273.1_g000013 Rmu_ssc0000190.1_g000014 Rmu_ssc0000372.1_g000031
rosa_roxburghii Rroxscaffold_3G00246080 Rroxscaffold_3G00249860 Rroxscaffold_3G00249870 Rroxscaffold_3G00253500 Rroxscaffold_4G00283340
rosa_rugosa Rorug01G0384300 Rorug07G0079000 Rorug07G0079000 Rorug07G0079000 Rorug07G0108300 Rorug07G0141200
rosa_samantha Rh1AG395700 Rh1BG359900 Rh1DG006600 Rh1DG390900 Rh2AG287100 Rh3BG335800 Rh3CG321100 Rh5DG116800 Rh7AG273000 Rh7BG207600 Rh7BG207800 Rh7BG237700 Rh7BG268400 Rh7CG221100 Rh7CG221300 Rh7CG254000 Rh7CG257900 Rh7CG292200 Rh7DG215700 Rh7DG215900 Rh7DG244500 Rh7DG249800 Rh7DG280700
rosa_wichuraiana Rw0G010370 Rw1G035090 Rw2G023020 Rw7G018200 Rw7G020570 Rw7G023690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 239
AccII CGCG 1 cut(s) 555
AccIII TCCGGA 1 cut(s) 267
AciI CCGC 3 cut(s) 60, 435, 489
AcoI YGGCCR 1 cut(s) 350
AcuI CTGAAG 2 cut(s) 179, 528
AcyI GRCGYC 1 cut(s) 240
AgsI TTSAA 2 cut(s) 55, 382
AjnI CCWGG 1 cut(s) 12
AluBI AGCT 3 cut(s) 179, 256, 457
AluI AGCT 3 cut(s) 179, 256, 457
Alw21I GWGCWC 1 cut(s) 181
Alw26I GTCTC 1 cut(s) 562
Aor13HI TCCGGA 1 cut(s) 267
AoxI GGCC 4 cut(s) 10, 202, 350, 494
ApeKI GCWGC 2 cut(s) 318, 503
AspLEI GCGC 2 cut(s) 242, 557
AspS9I GGNCC 2 cut(s) 212, 481
AsuC2I CCSGG 1 cut(s) 282
AsuHPI GGTGA 3 cut(s) 59, 126, 151
AvaII GGWCC 2 cut(s) 212, 481
AxyI CCTNAGG 2 cut(s) 183, 216
BanI GGYRCC 1 cut(s) 239
BanII GRGCYC 1 cut(s) 181
BbsI GAAGAC 1 cut(s) 62
Bbv12I GWGCWC 1 cut(s) 181
BbvI GCAGC 2 cut(s) 330, 490
BccI CCATC 4 cut(s) 74, 251, 418, 566
BceAI ACGGC 3 cut(s) 49, 365, 434
BciT130I CCWGG 1 cut(s) 14
BciVI GTATCC 1 cut(s) 337
BclI TGATCA 1 cut(s) 298
BcnI CCSGG 1 cut(s) 282
BcoDI GTCTC 1 cut(s) 562
BfoI RGCGCY 1 cut(s) 243
BfuI GTATCC 1 cut(s) 337
BglI GCCNNNNNGGC 1 cut(s) 248
BglII AGATCT 1 cut(s) 443
BisI GCNGC 2 cut(s) 319, 504
BlsI GCNGC 2 cut(s) 320, 505
Bme1390I CCNGG 2 cut(s) 14, 282
Bme18I GGWCC 2 cut(s) 212, 481
BmgT120I GGNCC 2 cut(s) 212, 481
BmiI GGNNCC 5 cut(s) 85, 241, 429, 482, 483
BmrFI CCNGG 2 cut(s) 14, 282
BmsI GCATC 1 cut(s) 529
BpiI GAAGAC 1 cut(s) 62
BpuEI CTTGAG 1 cut(s) 500
BpuMI CCSGG 1 cut(s) 282
Bsa29I ATCGAT 1 cut(s) 129
BsaHI GRCGYC 1 cut(s) 240
BsaJI CCNNGG 1 cut(s) 43
BsaWI WCCGGW 1 cut(s) 267
Bse21I CCTNAGG 2 cut(s) 183, 216
Bse3DI GCAATG 1 cut(s) 240
BseAI TCCGGA 1 cut(s) 267
BseBI CCWGG 1 cut(s) 14
BseCI ATCGAT 1 cut(s) 129
BseDI CCNNGG 1 cut(s) 43
BseGI GGATG 2 cut(s) 520, 558
BseMI GCAATG 1 cut(s) 240
BseMII CTCAG 1 cut(s) 174
BseXI GCAGC 2 cut(s) 330, 490
Bsh1236I CGCG 1 cut(s) 555
BshFI GGCC 4 cut(s) 12, 204, 352, 496
BshNI GGYRCC 1 cut(s) 239
BshVI ATCGAT 1 cut(s) 129
BsiHKAI GWGCWC 1 cut(s) 181
BsiSI CCGG 2 cut(s) 268, 282
BslFI GGGAC 2 cut(s) 372, 494
BsmAI GTCTC 1 cut(s) 562
BsmFI GGGAC 2 cut(s) 372, 494
BsnI GGCC 4 cut(s) 12, 204, 352, 496
Bsp1286I GDGCHC 1 cut(s) 181
Bsp13I TCCGGA 1 cut(s) 267
Bsp143I GATC 3 cut(s) 126, 298, 443
BspACI CCGC 3 cut(s) 60, 435, 489
BspANI GGCC 4 cut(s) 12, 204, 352, 496
BspCNI CTCAG 1 cut(s) 175
BspDI ATCGAT 1 cut(s) 129
BspEI TCCGGA 1 cut(s) 267
BspFNI CGCG 1 cut(s) 555
BspLI GGNNCC 5 cut(s) 85, 241, 429, 482, 483
BspT107I GGYRCC 1 cut(s) 239
BsrDI GCAATG 1 cut(s) 240
BssECI CCNNGG 1 cut(s) 43
BssMI GATC 3 cut(s) 126, 298, 443
BssNI GRCGYC 1 cut(s) 240
Bst2UI CCWGG 1 cut(s) 14
Bst4CI ACNGT 2 cut(s) 47, 212
BstACI GRCGYC 1 cut(s) 240
BstC8I GCNNGC 2 cut(s) 439, 588
BstDEI CTNAG 2 cut(s) 183, 216
BstDSI CCRYGG 1 cut(s) 43
BstF5I GGATG 2 cut(s) 520, 558
BstFNI CGCG 1 cut(s) 555
BstH2I RGCGCY 1 cut(s) 243
BstHHI GCGC 2 cut(s) 242, 557
BstKTI GATC 3 cut(s) 129, 301, 446
BstMAI GTCTC 1 cut(s) 562
BstMBI GATC 3 cut(s) 126, 298, 443
BstMWI GCNNNNNNNGC 4 cut(s) 239, 248, 327, 509
BstNI CCWGG 1 cut(s) 14
BstSCI CCNGG 2 cut(s) 12, 280
BstUI CGCG 1 cut(s) 555
BstV1I GCAGC 2 cut(s) 330, 490
BstV2I GAAGAC 1 cut(s) 62
BstX2I RGATCY 1 cut(s) 443
BstYI RGATCY 1 cut(s) 443
Bsu15I ATCGAT 1 cut(s) 129
Bsu36I CCTNAGG 2 cut(s) 183, 216
BsuI GTATCC 1 cut(s) 337
BsuRI GGCC 4 cut(s) 12, 204, 352, 496
BsuTUI ATCGAT 1 cut(s) 129
BtgI CCRYGG 1 cut(s) 43
BtgZI GCGATG 1 cut(s) 437
BtsCI GGATG 2 cut(s) 520, 558
BtsI GCAGTG 1 cut(s) 412
BtsIMutI CAGTG 1 cut(s) 412
Cac8I GCNNGC 2 cut(s) 439, 588
CfoI GCGC 2 cut(s) 242, 557
Cfr13I GGNCC 2 cut(s) 212, 481
ClaI ATCGAT 1 cut(s) 129
CseI GACGC 2 cut(s) 310, 579
CviAII CATG 2 cut(s) 8, 247
CviJI RGCY 9 cut(s) 12, 36, 179, 204, 256, 352, 457, 496, 586
CviKI_1 RGCY 9 cut(s) 12, 36, 179, 204, 256, 352, 457, 496, 586
DdeI CTNAG 2 cut(s) 183, 216
DinI GGCGCC 1 cut(s) 241
DpnI GATC 3 cut(s) 128, 300, 445
DpnII GATC 3 cut(s) 126, 298, 443
EaeI YGGCCR 1 cut(s) 350
Ecl136II GAGCTC 1 cut(s) 179
Eco147I AGGCCT 2 cut(s) 204, 496
Eco24I GRGCYC 1 cut(s) 181
Eco47I GGWCC 2 cut(s) 212, 481
Eco53kI GAGCTC 1 cut(s) 179
Eco57I CTGAAG 2 cut(s) 179, 528
Eco81I CCTNAGG 2 cut(s) 183, 216
EcoICRI GAGCTC 1 cut(s) 179
EcoO109I RGGNCCY 1 cut(s) 481
EcoRII CCWGG 1 cut(s) 12
EcoT38I GRGCYC 1 cut(s) 181
EgeI GGCGCC 1 cut(s) 241
EheI GGCGCC 1 cut(s) 241
FaeI CATG 2 cut(s) 11, 250
FaiI YATR 9 cut(s) 9, 21, 23, 122, 147, 227, 248, 363, 387
FalI AAGNNNNNCTT 2 cut(s) 509, 541
FaqI GGGAC 2 cut(s) 372, 494
FatI CATG 2 cut(s) 7, 246
FbaI TGATCA 1 cut(s) 298
Fnu4HI GCNGC 2 cut(s) 319, 504
FokI GGATG 2 cut(s) 507, 545
FriOI GRGCYC 1 cut(s) 181
Fsp4HI GCNGC 2 cut(s) 319, 504
GlaI GCGC 2 cut(s) 241, 556
GluI GCNGC 2 cut(s) 319, 504
HaeII RGCGCY 1 cut(s) 243
HaeIII GGCC 4 cut(s) 12, 204, 352, 496
HapII CCGG 2 cut(s) 268, 282
HgaI GACGC 2 cut(s) 310, 579
HhaI GCGC 2 cut(s) 242, 557
Hin1I GRCGYC 1 cut(s) 240
Hin1II CATG 2 cut(s) 11, 250
Hin6I GCGC 2 cut(s) 240, 555
HinP1I GCGC 2 cut(s) 240, 555
HinfI GANTC 3 cut(s) 131, 271, 547
HpaII CCGG 2 cut(s) 268, 282
HphI GGTGA 3 cut(s) 59, 126, 151
Hpy188I TCNGA 1 cut(s) 303
Hpy188III TCNNGA 3 cut(s) 97, 182, 268
HpyAV CCTTC 3 cut(s) 441, 495, 535
HpyCH4III ACNGT 2 cut(s) 47, 212
HpyCH4IV ACGT 2 cut(s) 66, 156
HpyCH4V TGCA 3 cut(s) 25, 104, 318
HpyF10VI GCNNNNNNNGC 4 cut(s) 239, 248, 327, 509
HpyF3I CTNAG 2 cut(s) 183, 216
HpySE526I ACGT 2 cut(s) 66, 156
Hsp92I GRCGYC 1 cut(s) 240
Hsp92II CATG 2 cut(s) 11, 250
HspAI GCGC 2 cut(s) 240, 555
KasI GGCGCC 1 cut(s) 239
KflI GGGWCCC 1 cut(s) 481
Kpn2I TCCGGA 1 cut(s) 267
Ksp22I TGATCA 1 cut(s) 298
Kzo9I GATC 3 cut(s) 126, 298, 443
LmnI GCTCC 1 cut(s) 184
LpnPI CCDG 7 cut(s) 26, 186, 195, 281, 295, 366, 467
Lsp1109I GCAGC 2 cut(s) 330, 490
LweI GCATC 1 cut(s) 529
MaeII ACGT 2 cut(s) 66, 156
MaeIII GTNAC 1 cut(s) 157
MalI GATC 3 cut(s) 128, 300, 445
MboI GATC 3 cut(s) 126, 298, 443
MboII GAAGA 3 cut(s) 67, 456, 520
MflI RGATCY 1 cut(s) 443
MhlI GDGCHC 1 cut(s) 181
MluCI AATT 1 cut(s) 595
Mly113I GGCGCC 1 cut(s) 240
MlyI GAGTC 1 cut(s) 265
MmeI TCCRAC 1 cut(s) 359
MnlI CCTC 3 cut(s) 178, 215, 349
MroI TCCGGA 1 cut(s) 267
MseI TTAA 2 cut(s) 75, 308
MspA1I CMGCKG 1 cut(s) 457
MspI CCGG 2 cut(s) 268, 282
MspR9I CCNGG 2 cut(s) 14, 282
MvaI CCWGG 1 cut(s) 14
MvnI CGCG 1 cut(s) 555
MwoI GCNNNNNNNGC 4 cut(s) 239, 248, 327, 509
NarI GGCGCC 1 cut(s) 240
NciI CCSGG 1 cut(s) 282
NdeII GATC 3 cut(s) 126, 298, 443
NlaIII CATG 2 cut(s) 11, 250
NlaIV GGNNCC 5 cut(s) 85, 241, 429, 482, 483
NmuCI GTSAC 1 cut(s) 157
PceI AGGCCT 2 cut(s) 204, 496
PcsI WCGNNNNNNNCGW 1 cut(s) 172
PfeI GAWTC 2 cut(s) 131, 547
PflFI GACNNNGTC 1 cut(s) 155
PkrI GCNGC 2 cut(s) 320, 505
PleI GAGTC 1 cut(s) 265
PluTI GGCGCC 1 cut(s) 243
PpsI GAGTC 1 cut(s) 265
PpuMI RGGWCCY 1 cut(s) 481
Psp124BI GAGCTC 1 cut(s) 181
Psp5II RGGWCCY 1 cut(s) 481
Psp6I CCWGG 1 cut(s) 12
PspGI CCWGG 1 cut(s) 12
PspN4I GGNNCC 5 cut(s) 85, 241, 429, 482, 483
PspPI GGNCC 2 cut(s) 212, 481
PspPPI RGGWCCY 1 cut(s) 481
PsuI RGATCY 1 cut(s) 443
PsyI GACNNNGTC 1 cut(s) 155
PvuII CAGCTG 1 cut(s) 457
SacI GAGCTC 1 cut(s) 181
SaqAI TTAA 2 cut(s) 75, 308
SatI GCNGC 2 cut(s) 319, 504
Sau3AI GATC 3 cut(s) 126, 298, 443
Sau96I GGNCC 2 cut(s) 212, 481
SchI GAGTC 1 cut(s) 265
ScrFI CCNGG 2 cut(s) 14, 282
SduI GDGCHC 1 cut(s) 181
SetI ASST 7 cut(s) 69, 159, 181, 189, 222, 258, 459
SfaNI GCATC 1 cut(s) 529
SfoI GGCGCC 1 cut(s) 241
SinI GGWCC 2 cut(s) 212, 481
SmlI CTYRAG 1 cut(s) 515
SmoI CTYRAG 1 cut(s) 515
Sse9I AATT 1 cut(s) 595
SseBI AGGCCT 2 cut(s) 204, 496
SsiI CCGC 3 cut(s) 60, 435, 489
SspDI GGCGCC 1 cut(s) 239
SspI AATATT 1 cut(s) 580
SstI GAGCTC 1 cut(s) 181
StuI AGGCCT 2 cut(s) 204, 496
StyD4I CCNGG 2 cut(s) 12, 280
TaaI ACNGT 2 cut(s) 47, 212
TaiI ACGT 2 cut(s) 69, 159
TaqI TCGA 3 cut(s) 129, 175, 222
TasI AATT 1 cut(s) 595
TfiI GAWTC 2 cut(s) 131, 547
Tru1I TTAA 2 cut(s) 75, 308
Tru9I TTAA 2 cut(s) 75, 308
TscAI CASTG 1 cut(s) 412
TseFI GTSAC 1 cut(s) 157
TseI GCWGC 2 cut(s) 318, 503
Tsp45I GTSAC 1 cut(s) 157
TspDTI ATGAA 1 cut(s) 252
TspRI CASTG 1 cut(s) 412
Tth111I GACNNNGTC 1 cut(s) 155
VpaK11BI GGWCC 2 cut(s) 212, 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.