Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007490.1

Orthogroup ID

OG0000445

Physical Location & Seq

Genomic Coordinates Forward (+)

21146 .. 22013

Gene Structure 868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007490.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

atggagaggtgcaagttcacgaagcaagtagacgcaggtagttttgggcatgtttataaagccgttgataagacgaccggagagttcgtcgccatcaaagagttgaagcacttgtgtcagtcttcatatctagagctaccaaaagtccaggcactgactaggttgaagcacccaaacgttgtcaacctcaagaggatccaaaggctacacggtgtcgtctttttcatccttgaatacatgcaaggtgtgatcaagatttctgatcttagtgctgcaagggagatcaactccagcccaccattcagtgattactccagcccatctaagttgctgctagactctttcctctacaacgaaaaggttgacatgtgggcaataagagcgatcatggccaagtggtttctcatgcgccctctgtttttggattcgagttcgccaaatcggatgcatcaaatttgtatagtcattgggttccaacaagggatacggtcatggttctgtgattctacagtcgagctcatcgagtcgatttgttcttgggatcctttgaagaggctaacagctgcacaagctgttcaccatcctttcttcactagagtctacaaagattcacatattactaattactcagctaacaaggttggaaatgtaattaagttgcatgcagcagctagcctattctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

227

Amino Acids

25.96

Weight (kDa)

9.36

Isoelectric Point (pI)

36.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19110 AT4G19110 AT4G19110 AT5G45430 AT5G45430
fragaria_vesca	FvH4_2g16890 FvH4_5g19220 FvH4_5g19340 FvH4_5g19350 FvH4_5g19360 FvH4_5g23910 FvH4_7g27810
malus_domestica	MD00G1001400.v1.1 MD04G1058900.v1.1 MD04G1059300.v1.1 MD04G1059500.v1.1 MD04G1059600.v1.1 MD04G1059800.v1.1 MD04G1061700.v1.1 MD04G1061800.v1.1 MD06G1014800.v1.1 MD06G1052900.v1.1 MD06G1055500.v1.1
prunus_persica	Prupe.5G021300_v2.0.a1 Prupe.5G065900_v2.0.a1 Prupe.5G066500_v2.0.a1
pyrus_communis	pycom06g04440
rosa_chinensis	RchiOBHm_Chr1g0374681 RchiOBHm_Chr2g0120471 RchiOBHm_Chr2g0120711 RchiOBHm_Chr7g0203821 RchiOBHm_Chr7g0203861 RchiOBHm_Chr7g0208401 RchiOBHm_Chr7g0209011 RchiOBHm_Chr7g0213341
rosa_laevigata	RLG00000001348 RLG00000002813 RLG00000003173 RLG00000003212 RLG00000003503 RLG00000022835 RLG00000026723 RLG00000035532
rosa_multiflora	Rmu_co7960007.1_g000001 Rmu_co7963796.1_g000001 Rmu_co8519951.1_g000002 Rmu_sc0002038.1_g000009 Rmu_sc0004947.1_g000015 Rmu_sc0007490.1_g000005 Rmu_sc0011180.1_g000003 Rmu_sc0015273.1_g000013 Rmu_ssc0000190.1_g000014 Rmu_ssc0000372.1_g000031
rosa_roxburghii	Rroxscaffold_3G00246080 Rroxscaffold_3G00249860 Rroxscaffold_3G00249870 Rroxscaffold_3G00253500 Rroxscaffold_4G00283340
rosa_rugosa	Rorug01G0384300 Rorug07G0079000 Rorug07G0079000 Rorug07G0079000 Rorug07G0108300 Rorug07G0141200
rosa_samantha	Rh1AG395700 Rh1BG359900 Rh1DG006600 Rh1DG390900 Rh2AG287100 Rh3BG335800 Rh3CG321100 Rh5DG116800 Rh7AG273000 Rh7BG207600 Rh7BG207800 Rh7BG237700 Rh7BG268400 Rh7CG221100 Rh7CG221300 Rh7CG254000 Rh7CG257900 Rh7CG292200 Rh7DG215700 Rh7DG215900 Rh7DG244500 Rh7DG249800 Rh7DG280700
rosa_wichuraiana	Rw0G010370 Rw1G035090 Rw2G023020 Rw7G018200 Rw7G020570 Rw7G023690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	57
Acc36I	ACCTGC	1 cut(s)	26
AccI	GTMKAC	2 cut(s)	30, 600
AclI	AACGTT	1 cut(s)	177
AclWI	GGATC	4 cut(s)	190, 203, 536, 549
AcoI	YGGCCR	1 cut(s)	390
AcsI	RAATTY	1 cut(s)	453
AflIII	ACRYGT	1 cut(s)	366
AgsI	TTSAA	4 cut(s)	106, 166, 233, 550
AjnI	CCWGG	1 cut(s)	147
AluBI	AGCT	6 cut(s)	136, 517, 563, 572, 632, 671
AluI	AGCT	6 cut(s)	136, 517, 563, 572, 632, 671
Alw21I	GWGCWC	1 cut(s)	519
AlwI	GGATC	4 cut(s)	190, 203, 536, 549
AlwNI	CAGNNNCTG	1 cut(s)	154
AoxI	GGCC	1 cut(s)	390
ApeKI	GCWGC	5 cut(s)	272, 331, 563, 665, 668
ApoI	RAATTY	1 cut(s)	453
AspLEI	GCGC	1 cut(s)	411
AsuHPI	GGTGA	1 cut(s)	569
AsuNHI	GCTAGC	1 cut(s)	671
BalI	TGGCCA	1 cut(s)	392
BamHI	GGATCC	2 cut(s)	195, 541
BanII	GRGCYC	1 cut(s)	519
BbsI	GAAGAC	1 cut(s)	114
Bbv12I	GWGCWC	1 cut(s)	519
BbvI	GCAGC	5 cut(s)	259, 318, 550, 677, 680
BccI	CCATC	3 cut(s)	101, 328, 588
BceAI	ACGGC	1 cut(s)	47
BciT130I	CCWGG	1 cut(s)	149
BciVI	GTATCC	1 cut(s)	477
BclI	TGATCA	1 cut(s)	249
BfaI	CTAG	6 cut(s)	131, 159, 335, 594, 672, 682
BfmI	CTRYAG	1 cut(s)	507
BfuAI	ACCTGC	1 cut(s)	26
BfuI	GTATCC	1 cut(s)	477
BisI	GCNGC	5 cut(s)	273, 332, 564, 666, 669
BlsI	GCNGC	5 cut(s)	274, 333, 565, 667, 670
Bme1390I	CCNGG	1 cut(s)	149
BmiI	GGNNCC	3 cut(s)	197, 473, 543
BmrFI	CCNGG	1 cut(s)	149
BmsI	GCATC	2 cut(s)	435, 457
BmtI	GCTAGC	1 cut(s)	675
BpiI	GAAGAC	1 cut(s)	114
BplI	GAGNNNNNCTC	2 cut(s)	272, 304
BpmI	CTGGAG	2 cut(s)	274, 298
BpuEI	CTTGAG	1 cut(s)	173
BsaWI	WCCGGW	1 cut(s)	77
BsaXI	ACNNNNNCTCC	2 cut(s)	72, 102
BseBI	CCWGG	1 cut(s)	149
BseGI	GGATG	3 cut(s)	225, 450, 580
BseMII	CTCAG	1 cut(s)	642
BseXI	GCAGC	5 cut(s)	259, 318, 550, 677, 680
BsgI	GTGCAG	1 cut(s)	549
Bsh1285I	CGRYCG	1 cut(s)	78
BshFI	GGCC	1 cut(s)	392
BsiEI	CGRYCG	1 cut(s)	78
BsiHKAI	GWGCWC	1 cut(s)	519
BsiSI	CCGG	1 cut(s)	78
BsnI	GGCC	1 cut(s)	392
Bsp1286I	GDGCHC	1 cut(s)	519
Bsp143I	GATC	6 cut(s)	195, 249, 262, 282, 384, 541
BspANI	GGCC	1 cut(s)	392
BspCNI	CTCAG	1 cut(s)	641
BspLI	GGNNCC	3 cut(s)	197, 473, 543
BspMI	ACCTGC	1 cut(s)	26
BspOI	GCTAGC	1 cut(s)	675
BspPI	GGATC	4 cut(s)	190, 203, 536, 549
BssMI	GATC	6 cut(s)	195, 249, 262, 282, 384, 541
Bst2UI	CCWGG	1 cut(s)	149
Bst4CI	ACNGT	3 cut(s)	212, 489, 511
Bst6I	CTCTTC	1 cut(s)	545
BstC8I	GCNNGC	2 cut(s)	663, 673
BstDEI	CTNAG	3 cut(s)	266, 324, 628
BstF5I	GGATG	3 cut(s)	225, 450, 580
BstHHI	GCGC	1 cut(s)	411
BstKTI	GATC	6 cut(s)	198, 252, 265, 285, 387, 544
BstMBI	GATC	6 cut(s)	195, 249, 262, 282, 384, 541
BstMCI	CGRYCG	1 cut(s)	78
BstMWI	GCNNNNNNNGC	3 cut(s)	380, 389, 569
BstNI	CCWGG	1 cut(s)	149
BstNSI	RCATGY	4 cut(s)	53, 241, 370, 665
BstSCI	CCNGG	1 cut(s)	147
BstSFI	CTRYAG	1 cut(s)	507
BstV1I	GCAGC	5 cut(s)	259, 318, 550, 677, 680
BstV2I	GAAGAC	1 cut(s)	114
BstX2I	RGATCY	2 cut(s)	195, 541
BstYI	RGATCY	2 cut(s)	195, 541
BsuI	GTATCC	1 cut(s)	477
BsuRI	GGCC	1 cut(s)	392
BtsCI	GGATG	3 cut(s)	225, 450, 580
BtsIMutI	CAGTG	2 cut(s)	152, 310
BveI	ACCTGC	1 cut(s)	26
Cac8I	GCNNGC	2 cut(s)	663, 673
CaiI	CAGNNNCTG	1 cut(s)	154
CfoI	GCGC	1 cut(s)	411
CseI	GACGC	1 cut(s)	41
CviAII	CATG	7 cut(s)	50, 238, 367, 388, 406, 492, 662
DdeI	CTNAG	3 cut(s)	266, 324, 628
DpnI	GATC	6 cut(s)	197, 251, 264, 284, 386, 543
DpnII	GATC	6 cut(s)	195, 249, 262, 282, 384, 541
EaeI	YGGCCR	1 cut(s)	390
Eam1104I	CTCTTC	1 cut(s)	545
EarI	CTCTTC	1 cut(s)	545
Ecl136II	GAGCTC	1 cut(s)	517
Eco24I	GRGCYC	1 cut(s)	519
Eco53kI	GAGCTC	1 cut(s)	517
EcoICRI	GAGCTC	1 cut(s)	517
EcoRII	CCWGG	1 cut(s)	147
EcoT22I	ATGCAT	1 cut(s)	450
EcoT38I	GRGCYC	1 cut(s)	519
FaeI	CATG	7 cut(s)	53, 241, 370, 391, 409, 495, 665
FatI	CATG	7 cut(s)	49, 237, 366, 387, 405, 491, 661
FbaI	TGATCA	1 cut(s)	249
FblI	GTMKAC	2 cut(s)	30, 600
Fnu4HI	GCNGC	5 cut(s)	273, 332, 564, 666, 669
FokI	GGATG	3 cut(s)	212, 457, 567
FriOI	GRGCYC	1 cut(s)	519
Fsp4HI	GCNGC	5 cut(s)	273, 332, 564, 666, 669
FspBI	CTAG	6 cut(s)	131, 159, 335, 594, 672, 682
GlaI	GCGC	1 cut(s)	410
GluI	GCNGC	5 cut(s)	273, 332, 564, 666, 669
GsuI	CTGGAG	2 cut(s)	274, 298
HaeIII	GGCC	1 cut(s)	392
HapII	CCGG	1 cut(s)	78
HgaI	GACGC	1 cut(s)	41
HhaI	GCGC	1 cut(s)	411
Hin1II	CATG	7 cut(s)	53, 241, 370, 391, 409, 495, 665
Hin6I	GCGC	1 cut(s)	409
HinP1I	GCGC	1 cut(s)	409
HincII	GTYRAC	2 cut(s)	184, 364
HindII	GTYRAC	2 cut(s)	184, 364
HinfI	GANTC	6 cut(s)	338, 425, 503, 524, 597, 608
HpaII	CCGG	1 cut(s)	78
HphI	GGTGA	1 cut(s)	569
Hpy166II	GTNNAC	6 cut(s)	18, 31, 184, 364, 577, 601
Hpy188I	TCNGA	2 cut(s)	262, 444
Hpy188III	TCNNGA	4 cut(s)	19, 131, 190, 253
Hpy8I	GTNNAC	6 cut(s)	18, 31, 184, 364, 577, 601
Hpy99I	CGWCG	1 cut(s)	92
HpyCH4III	ACNGT	3 cut(s)	212, 489, 511
HpyCH4IV	ACGT	1 cut(s)	177
HpyCH4V	TGCA	7 cut(s)	12, 241, 275, 448, 566, 661, 665
HpyF10VI	GCNNNNNNNGC	3 cut(s)	380, 389, 569
HpyF3I	CTNAG	3 cut(s)	266, 324, 628
HpySE526I	ACGT	1 cut(s)	177
Hsp92II	CATG	7 cut(s)	53, 241, 370, 391, 409, 495, 665
HspAI	GCGC	1 cut(s)	409
Ksp22I	TGATCA	1 cut(s)	249
Kzo9I	GATC	6 cut(s)	195, 249, 262, 282, 384, 541
LpnPI	CCDG	6 cut(s)	21, 91, 134, 161, 304, 328
Lsp1109I	GCAGC	5 cut(s)	259, 318, 550, 677, 680
LweI	GCATC	2 cut(s)	435, 457
MaeI	CTAG	6 cut(s)	131, 159, 335, 594, 672, 682
MaeII	ACGT	1 cut(s)	177
MalI	GATC	6 cut(s)	197, 251, 264, 284, 386, 543
MboI	GATC	6 cut(s)	195, 249, 262, 282, 384, 541
MboII	GAAGA	3 cut(s)	114, 562, 580
MflI	RGATCY	2 cut(s)	195, 541
MhlI	GDGCHC	1 cut(s)	519
MlsI	TGGCCA	1 cut(s)	392
MluCI	AATT	3 cut(s)	453, 622, 651
MluNI	TGGCCA	1 cut(s)	392
MlyI	GAGTC	3 cut(s)	332, 533, 606
MmeI	TCCRAC	2 cut(s)	499, 622
MnlI	CCTC	5 cut(s)	186, 197, 356, 423, 546
Mox20I	TGGCCA	1 cut(s)	392
Mph1103I	ATGCAT	1 cut(s)	450
MscI	TGGCCA	1 cut(s)	392
MseI	TTAA	1 cut(s)	654
Msp20I	TGGCCA	1 cut(s)	392
MspA1I	CMGCKG	1 cut(s)	563
MspI	CCGG	1 cut(s)	78
MspR9I	CCNGG	1 cut(s)	149
MvaI	CCWGG	1 cut(s)	149
MwoI	GCNNNNNNNGC	3 cut(s)	380, 389, 569
NdeII	GATC	6 cut(s)	195, 249, 262, 282, 384, 541
NheI	GCTAGC	1 cut(s)	671
NlaIII	CATG	7 cut(s)	53, 241, 370, 391, 409, 495, 665
NlaIV	GGNNCC	3 cut(s)	197, 473, 543
NsiI	ATGCAT	1 cut(s)	450
NspI	RCATGY	4 cut(s)	53, 241, 370, 665
PaeI	GCATGC	1 cut(s)	665
PciI	ACATGT	1 cut(s)	366
PcsI	WCGNNNNNNNCGW	1 cut(s)	519
PfeI	GAWTC	3 cut(s)	425, 503, 608
PkrI	GCNGC	5 cut(s)	274, 333, 565, 667, 670
PleI	GAGTC	3 cut(s)	332, 532, 605
PpsI	GAGTC	3 cut(s)	332, 532, 605
PscI	ACATGT	1 cut(s)	366
PsiI	TTATAA	1 cut(s)	57
Psp124BI	GAGCTC	1 cut(s)	519
Psp1406I	AACGTT	1 cut(s)	177
Psp6I	CCWGG	1 cut(s)	147
PspGI	CCWGG	1 cut(s)	147
PspN4I	GGNNCC	3 cut(s)	197, 473, 543
PstNI	CAGNNNCTG	1 cut(s)	154
PsuI	RGATCY	2 cut(s)	195, 541
PvuII	CAGCTG	1 cut(s)	563
SacI	GAGCTC	1 cut(s)	519
SaqAI	TTAA	1 cut(s)	654
SatI	GCNGC	5 cut(s)	273, 332, 564, 666, 669
Sau3AI	GATC	6 cut(s)	195, 249, 262, 282, 384, 541
SchI	GAGTC	3 cut(s)	332, 533, 606
ScrFI	CCNGG	1 cut(s)	149
SduI	GDGCHC	1 cut(s)	519
SfaNI	GCATC	2 cut(s)	435, 457
SfcI	CTRYAG	1 cut(s)	507
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
SphI	GCATGC	1 cut(s)	665
Sse9I	AATT	3 cut(s)	453, 622, 651
SspMI	CTAG	6 cut(s)	131, 159, 335, 594, 672, 682
SstI	GAGCTC	1 cut(s)	519
StyD4I	CCNGG	1 cut(s)	147
TaaI	ACNGT	3 cut(s)	212, 489, 511
TaiI	ACGT	1 cut(s)	180
TaqI	TCGA	4 cut(s)	428, 513, 522, 527
TasI	AATT	3 cut(s)	453, 622, 651
TfiI	GAWTC	3 cut(s)	425, 503, 608
Tru1I	TTAA	1 cut(s)	654
Tru9I	TTAA	1 cut(s)	654
TscAI	CASTG	2 cut(s)	159, 310
TseI	GCWGC	5 cut(s)	272, 331, 563, 665, 668
TspDTI	ATGAA	2 cut(s)	114, 214
TspRI	CASTG	2 cut(s)	159, 310
XapI	RAATTY	1 cut(s)	453
XbaI	TCTAGA	1 cut(s)	130
XceI	RCATGY	4 cut(s)	53, 241, 370, 665
XmiI	GTMKAC	2 cut(s)	30, 600
XspI	CTAG	6 cut(s)	131, 159, 335, 594, 672, 682
Zsp2I	ATGCAT	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.