Rmu_ssc0000372.1_g000031

GTP cyclohydrolase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000372.1
Physical Location & Seq
Forward (+)
115646 .. 118148
2503 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000372.1_g000031.1.cds

Sequence Viewer

Length: 615 bp
atgggaagcactgtggaggccgttgcaaccccaagaagttgctccgccgagctgaaatcccccaaaatcgccgaccttggttctcccaactccgaccaccattgctcgatttatttgagggcttttctagcccagaagacgtggatgctaccctcaaaacctcttgcagcgattcgatctgtgatcgacgggttgaattggcggacgattcgtaaaatcgcggttgtgctgttaagaagacgcagctggattagaggaagattgagaatggtcagtgttataactataccccttgacttatgcttggttttgggtatggatgctaagccttgttgtcaaggtggagatgtgatagttgttgtggaggctaaccacacctgtatgatctgtagagggattgagaagtttggaagtagcacagctacaattgcagtactgggtcatttttcaactgcccctgctgcaagggcaagtttttgtagagcctcccaaacattgccatttcaggaccgtgatcctaatttatctatgaactatcaattcttttctactcagttccttgtcttggcagtttatgcttctgagccacaagttcatgatattgtcaaaggatga

Protein Analysis

204

Amino Acids

22.36

Weight (kDa)

9.4

Isoelectric Point (pI)

39.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000445)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19110 AT4G19110 AT4G19110 AT5G45430 AT5G45430
fragaria_vesca FvH4_2g16890 FvH4_5g19220 FvH4_5g19340 FvH4_5g19350 FvH4_5g19360 FvH4_5g23910 FvH4_7g27810
malus_domestica MD00G1001400.v1.1 MD04G1058900.v1.1 MD04G1059300.v1.1 MD04G1059500.v1.1 MD04G1059600.v1.1 MD04G1059800.v1.1 MD04G1061700.v1.1 MD04G1061800.v1.1 MD06G1014800.v1.1 MD06G1052900.v1.1 MD06G1055500.v1.1
prunus_persica Prupe.5G021300_v2.0.a1 Prupe.5G065900_v2.0.a1 Prupe.5G066500_v2.0.a1
pyrus_communis pycom06g04440
rosa_chinensis RchiOBHm_Chr1g0374681 RchiOBHm_Chr2g0120471 RchiOBHm_Chr2g0120711 RchiOBHm_Chr7g0203821 RchiOBHm_Chr7g0203861 RchiOBHm_Chr7g0208401 RchiOBHm_Chr7g0209011 RchiOBHm_Chr7g0213341
rosa_laevigata RLG00000001348 RLG00000002813 RLG00000003173 RLG00000003212 RLG00000003503 RLG00000022835 RLG00000026723 RLG00000035532
rosa_multiflora Rmu_co7960007.1_g000001 Rmu_co7963796.1_g000001 Rmu_co8519951.1_g000002 Rmu_sc0002038.1_g000009 Rmu_sc0004947.1_g000015 Rmu_sc0007490.1_g000005 Rmu_sc0011180.1_g000003 Rmu_sc0015273.1_g000013 Rmu_ssc0000190.1_g000014 Rmu_ssc0000372.1_g000031
rosa_roxburghii Rroxscaffold_3G00246080 Rroxscaffold_3G00249860 Rroxscaffold_3G00249870 Rroxscaffold_3G00253500 Rroxscaffold_4G00283340
rosa_rugosa Rorug01G0384300 Rorug07G0079000 Rorug07G0079000 Rorug07G0079000 Rorug07G0108300 Rorug07G0141200
rosa_samantha Rh1AG395700 Rh1BG359900 Rh1DG006600 Rh1DG390900 Rh2AG287100 Rh3BG335800 Rh3CG321100 Rh5DG116800 Rh7AG273000 Rh7BG207600 Rh7BG207800 Rh7BG237700 Rh7BG268400 Rh7CG221100 Rh7CG221300 Rh7CG254000 Rh7CG257900 Rh7CG292200 Rh7DG215700 Rh7DG215900 Rh7DG244500 Rh7DG249800 Rh7DG280700
rosa_wichuraiana Rw0G010370 Rw1G035090 Rw2G023020 Rw7G018200 Rw7G020570 Rw7G023690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 281
AccII CGCG 1 cut(s) 221
AciI CCGC 3 cut(s) 45, 202, 221
AclWI GGATC 1 cut(s) 509
AfaI GTAC 1 cut(s) 435
AfiI CCNNNNNNNGG 1 cut(s) 565
AgsI TTSAA 2 cut(s) 196, 450
AjiI CACGTC 1 cut(s) 141
AluBI AGCT 3 cut(s) 52, 246, 422
AluI AGCT 3 cut(s) 52, 246, 422
AlwI GGATC 1 cut(s) 509
AoxI GGCC 1 cut(s) 18
ApeKI GCWGC 3 cut(s) 167, 243, 461
AspS9I GGNCC 1 cut(s) 508
AvaII GGWCC 1 cut(s) 508
BbsI GAAGAC 2 cut(s) 143, 244
BbvI GCAGC 3 cut(s) 179, 255, 448
BceAI ACGGC 1 cut(s) 5
BfaI CTAG 1 cut(s) 128
BfmI CTRYAG 1 cut(s) 388
BisI GCNGC 3 cut(s) 168, 244, 462
BlpI GCTNAGC 1 cut(s) 324
BlsI GCNGC 3 cut(s) 169, 245, 463
BmcAI AGTACT 1 cut(s) 435
Bme18I GGWCC 1 cut(s) 508
BmgBI CACGTC 1 cut(s) 141
BmgT120I GGNCC 1 cut(s) 508
BmrI ACTGGG 1 cut(s) 446
BmsI GCATC 2 cut(s) 135, 310
BmuI ACTGGG 1 cut(s) 446
BpiI GAAGAC 2 cut(s) 143, 244
Bpu1102I GCTNAGC 1 cut(s) 324
BsaJI CCNNGG 1 cut(s) 76
Bsc4I CCNNNNNNNGG 1 cut(s) 565
Bse1I ACTGG 1 cut(s) 441
Bse3DI GCAATG 2 cut(s) 100, 494
BseDI CCNNGG 1 cut(s) 76
BseGI GGATG 2 cut(s) 150, 325
BseLI CCNNNNNNNGG 1 cut(s) 565
BseMI GCAATG 2 cut(s) 100, 494
BseMII CTCAG 2 cut(s) 566, 573
BseNI ACTGG 1 cut(s) 441
BseXI GCAGC 3 cut(s) 179, 255, 448
Bsh1236I CGCG 1 cut(s) 221
BshFI GGCC 1 cut(s) 20
BslI CCNNNNNNNGG 1 cut(s) 565
BsnI GGCC 1 cut(s) 20
Bsp143I GATC 4 cut(s) 176, 183, 384, 514
Bsp1720I GCTNAGC 1 cut(s) 324
BspACI CCGC 3 cut(s) 45, 202, 221
BspANI GGCC 1 cut(s) 20
BspCNI CTCAG 2 cut(s) 565, 574
BspFNI CGCG 1 cut(s) 221
BspHI TCATGA 1 cut(s) 595
BspPI GGATC 1 cut(s) 509
BsrDI GCAATG 2 cut(s) 100, 494
BsrI ACTGG 1 cut(s) 441
BssECI CCNNGG 1 cut(s) 76
BssMI GATC 4 cut(s) 176, 183, 384, 514
BssT1I CCWWGG 1 cut(s) 76
Bst4CI ACNGT 2 cut(s) 13, 512
BstAPI GCANNNNNTGC 1 cut(s) 575
BstDEI CTNAG 3 cut(s) 324, 552, 582
BstF5I GGATG 2 cut(s) 150, 325
BstFNI CGCG 1 cut(s) 221
BstKTI GATC 4 cut(s) 179, 186, 387, 517
BstMBI GATC 4 cut(s) 176, 183, 384, 514
BstMWI GCNNNNNNNGC 5 cut(s) 128, 428, 461, 467, 575
BstSFI CTRYAG 1 cut(s) 388
BstUI CGCG 1 cut(s) 221
BstV1I GCAGC 3 cut(s) 179, 255, 448
BstV2I GAAGAC 2 cut(s) 143, 244
BsuRI GGCC 1 cut(s) 20
BtrI CACGTC 1 cut(s) 141
BtsCI GGATG 2 cut(s) 150, 325
BtsIMutI CAGTG 2 cut(s) 9, 280
CciI TCATGA 1 cut(s) 595
Cfr13I GGNCC 1 cut(s) 508
CseI GACGC 1 cut(s) 249
Csp6I GTAC 1 cut(s) 434
CviAII CATG 1 cut(s) 596
CviQI GTAC 1 cut(s) 434
DdeI CTNAG 3 cut(s) 324, 552, 582
DpnI GATC 4 cut(s) 178, 185, 386, 516
DpnII GATC 4 cut(s) 176, 183, 384, 514
EciI GGCGGA 2 cut(s) 34, 217
Eco130I CCWWGG 1 cut(s) 76
Eco47I GGWCC 1 cut(s) 508
EcoT14I CCWWGG 1 cut(s) 76
ErhI CCWWGG 1 cut(s) 76
FaeI CATG 1 cut(s) 599
FaiI YATR 8 cut(s) 281, 287, 301, 317, 383, 530, 576, 597
FatI CATG 1 cut(s) 595
Fnu4HI GCNGC 3 cut(s) 168, 244, 462
FokI GGATG 2 cut(s) 157, 332
Fsp4HI GCNGC 3 cut(s) 168, 244, 462
FspBI CTAG 1 cut(s) 128
GluI GCNGC 3 cut(s) 168, 244, 462
HaeIII GGCC 1 cut(s) 20
HgaI GACGC 1 cut(s) 249
Hin1II CATG 1 cut(s) 599
HinfI GANTC 2 cut(s) 172, 208
Hpy188I TCNGA 2 cut(s) 94, 583
Hpy188III TCNNGA 2 cut(s) 506, 596
Hpy99I CGWCG 1 cut(s) 191
HpyCH4III ACNGT 2 cut(s) 13, 512
HpyCH4IV ACGT 1 cut(s) 140
HpyCH4V TGCA 4 cut(s) 26, 167, 431, 464
HpyF10VI GCNNNNNNNGC 5 cut(s) 128, 428, 461, 467, 575
HpyF3I CTNAG 3 cut(s) 324, 552, 582
HpySE526I ACGT 1 cut(s) 140
Hsp92II CATG 1 cut(s) 599
Kzo9I GATC 4 cut(s) 176, 183, 384, 514
LmnI GCTCC 1 cut(s) 47
LpnPI CCDG 6 cut(s) 146, 232, 391, 422, 471, 491
Lsp1109I GCAGC 3 cut(s) 179, 255, 448
LweI GCATC 2 cut(s) 135, 310
MaeI CTAG 1 cut(s) 128
MaeII ACGT 1 cut(s) 140
MalI GATC 4 cut(s) 178, 185, 386, 516
MboI GATC 4 cut(s) 176, 183, 384, 514
MboII GAAGA 3 cut(s) 148, 249, 270
MfeI CAATTG 1 cut(s) 426
MluCI AATT 4 cut(s) 196, 426, 520, 539
MmeI TCCRAC 1 cut(s) 117
MnlI CCTC 8 cut(s) 10, 111, 163, 171, 248, 358, 386, 496
MseI TTAA 1 cut(s) 233
MslI CAYNNNNRTG 1 cut(s) 380
MspA1I CMGCKG 1 cut(s) 246
MunI CAATTG 1 cut(s) 426
MvnI CGCG 1 cut(s) 221
MwoI GCNNNNNNNGC 5 cut(s) 128, 428, 461, 467, 575
NdeII GATC 4 cut(s) 176, 183, 384, 514
NlaIII CATG 1 cut(s) 599
NmeAIII GCCGAG 1 cut(s) 73
PagI TCATGA 1 cut(s) 595
PfeI GAWTC 2 cut(s) 172, 208
PkrI GCNGC 3 cut(s) 169, 245, 463
PsiI TTATAA 1 cut(s) 281
PspPI GGNCC 1 cut(s) 508
PvuII CAGCTG 1 cut(s) 246
RsaI GTAC 1 cut(s) 435
RsaNI GTAC 1 cut(s) 434
RseI CAYNNNNRTG 1 cut(s) 380
SaqAI TTAA 1 cut(s) 233
SatI GCNGC 3 cut(s) 168, 244, 462
Sau3AI GATC 4 cut(s) 176, 183, 384, 514
Sau96I GGNCC 1 cut(s) 508
ScaI AGTACT 1 cut(s) 435
SetI ASST 8 cut(s) 54, 78, 143, 163, 248, 343, 380, 424
SfaNI GCATC 2 cut(s) 135, 310
SfcI CTRYAG 1 cut(s) 388
SinI GGWCC 1 cut(s) 508
SmiMI CAYNNNNRTG 1 cut(s) 380
Sse9I AATT 4 cut(s) 196, 426, 520, 539
SsiI CCGC 3 cut(s) 45, 202, 221
SspMI CTAG 1 cut(s) 128
StyI CCWWGG 1 cut(s) 76
TaaI ACNGT 2 cut(s) 13, 512
TaiI ACGT 1 cut(s) 143
TaqI TCGA 3 cut(s) 107, 175, 186
TasI AATT 4 cut(s) 196, 426, 520, 539
TatI WGTACW 1 cut(s) 433
TfiI GAWTC 2 cut(s) 172, 208
Tru1I TTAA 1 cut(s) 233
Tru9I TTAA 1 cut(s) 233
TscAI CASTG 2 cut(s) 16, 280
TseI GCWGC 3 cut(s) 167, 243, 461
TspDTI ATGAA 2 cut(s) 545, 584
TspRI CASTG 2 cut(s) 16, 280
VpaK11BI GGWCC 1 cut(s) 508
XspI CTAG 1 cut(s) 128
ZrmI AGTACT 1 cut(s) 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.