Belongs to the protein kinase superfamily
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1315 |
| Acc36I | ACCTGC | 1 cut(s) | 1315 |
| Acc65I | GGTACC | 1 cut(s) | 537 |
| AccB1I | GGYRCC | 1 cut(s) | 537 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 965 |
| AccI | GTMKAC | 1 cut(s) | 527 |
| AccII | CGCG | 1 cut(s) | 1409 |
| AciI | CCGC | 3 cut(s) | 1273, 1295, 1409 |
| AclWI | GGATC | 2 cut(s) | 1369, 1383 |
| AcoI | YGGCCR | 1 cut(s) | 615 |
| AcsI | RAATTY | 1 cut(s) | 678 |
| AcuI | CTGAAG | 3 cut(s) | 363, 545, 570 |
| AcvI | CACGTG | 1 cut(s) | 1223 |
| AdeI | CACNNNGTG | 1 cut(s) | 1226 |
| AfaI | GTAC | 6 cut(s) | 59, 275, 308, 512, 539, 555 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 646, 965, 1398 |
| AflII | CTTAAG | 1 cut(s) | 425 |
| AflIII | ACRYGT | 1 cut(s) | 522 |
| AgsI | TTSAA | 6 cut(s) | 287, 371, 380, 497, 1141, 1370 |
| AjnI | CCWGG | 3 cut(s) | 1110, 1174, 1381 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 694, 726 |
| AleI | CACNNNNGTG | 1 cut(s) | 1082 |
| Alw21I | GWGCWC | 2 cut(s) | 547, 1148 |
| Alw26I | GTCTC | 2 cut(s) | 1012, 1334 |
| AlwI | GGATC | 2 cut(s) | 1369, 1383 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1199 |
| Ama87I | CYCGRG | 1 cut(s) | 486 |
| AoxI | GGCC | 5 cut(s) | 382, 615, 860, 876, 1361 |
| ApeKI | GCWGC | 5 cut(s) | 26, 869, 988, 1087, 1297 |
| ApoI | RAATTY | 1 cut(s) | 678 |
| AseI | ATTAAT | 1 cut(s) | 114 |
| Asp718I | GGTACC | 1 cut(s) | 537 |
| AspLEI | GCGC | 1 cut(s) | 1092 |
| AspS9I | GGNCC | 2 cut(s) | 847, 877 |
| AsuC2I | CCSGG | 1 cut(s) | 648 |
| AsuHPI | GGTGA | 2 cut(s) | 92, 140 |
| AvaI | CYCGRG | 1 cut(s) | 486 |
| AvaII | GGWCC | 1 cut(s) | 847 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 521, 554 |
| BanI | GGYRCC | 1 cut(s) | 537 |
| BanII | GRGCYC | 4 cut(s) | 547, 1148, 1219, 1327 |
| BbrPI | CACGTG | 1 cut(s) | 1223 |
| BbsI | GAAGAC | 2 cut(s) | 182, 623 |
| Bbv12I | GWGCWC | 2 cut(s) | 547, 1148 |
| BbvI | GCAGC | 5 cut(s) | 13, 856, 1000, 1099, 1284 |
| BccI | CCATC | 5 cut(s) | 77, 595, 716, 805, 928 |
| BciT130I | CCWGG | 3 cut(s) | 1112, 1176, 1383 |
| BclI | TGATCA | 1 cut(s) | 808 |
| BcnI | CCSGG | 1 cut(s) | 648 |
| BcoDI | GTCTC | 2 cut(s) | 1012, 1334 |
| BfaI | CTAG | 5 cut(s) | 804, 948, 999, 1038, 1398 |
| BfmI | CTRYAG | 3 cut(s) | 870, 1071, 1191 |
| BfrI | CTTAAG | 1 cut(s) | 425 |
| BfuAI | ACCTGC | 1 cut(s) | 1315 |
| BisI | GCNGC | 5 cut(s) | 27, 870, 989, 1088, 1298 |
| BlsI | GCNGC | 5 cut(s) | 28, 871, 990, 1089, 1299 |
| BmcAI | AGTACT | 1 cut(s) | 555 |
| Bme1390I | CCNGG | 4 cut(s) | 648, 1112, 1176, 1383 |
| Bme18I | GGWCC | 1 cut(s) | 847 |
| BmeT110I | CYCGRG | 1 cut(s) | 486 |
| BmgT120I | GGNCC | 2 cut(s) | 847, 877 |
| BmiI | GGNNCC | 6 cut(s) | 539, 848, 849, 1218, 1270, 1324 |
| BmrFI | CCNGG | 4 cut(s) | 648, 1112, 1176, 1383 |
| BmrI | ACTGGG | 2 cut(s) | 1321, 1353 |
| BmsI | GCATC | 4 cut(s) | 406, 1105, 1225, 1247 |
| BmuI | ACTGGG | 2 cut(s) | 1321, 1353 |
| BoxI | GACNNNNGTC | 1 cut(s) | 477 |
| BpiI | GAAGAC | 2 cut(s) | 182, 623 |
| BpmI | CTGGAG | 2 cut(s) | 866, 1341 |
| BpuEI | CTTGAG | 1 cut(s) | 227 |
| BpuMI | CCSGG | 1 cut(s) | 648 |
| BsaAI | YACGTR | 2 cut(s) | 523, 1223 |
| BsaI | GGTCTC | 1 cut(s) | 1012 |
| BsaJI | CCNNGG | 1 cut(s) | 1174 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 646, 965, 1398 |
| Bse1I | ACTGG | 4 cut(s) | 130, 1023, 1327, 1348 |
| Bse3DI | GCAATG | 1 cut(s) | 206 |
| BseBI | CCWGG | 3 cut(s) | 1112, 1176, 1383 |
| BseDI | CCNNGG | 1 cut(s) | 1174 |
| BseGI | GGATG | 3 cut(s) | 223, 920, 1120 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 646, 965, 1398 |
| BseMI | GCAATG | 1 cut(s) | 206 |
| BseMII | CTCAG | 2 cut(s) | 1233, 1372 |
| BseNI | ACTGG | 4 cut(s) | 130, 1023, 1327, 1348 |
| BseRI | GAGGAG | 1 cut(s) | 191 |
| BseXI | GCAGC | 5 cut(s) | 13, 856, 1000, 1099, 1284 |
| BsgI | GTGCAG | 1 cut(s) | 1106 |
| Bsh1236I | CGCG | 1 cut(s) | 1409 |
| BshFI | GGCC | 5 cut(s) | 384, 617, 862, 878, 1363 |
| BshNI | GGYRCC | 1 cut(s) | 537 |
| BsiHKAI | GWGCWC | 2 cut(s) | 547, 1148 |
| BsiHKCI | CYCGRG | 1 cut(s) | 486 |
| BsiSI | CCGG | 1 cut(s) | 647 |
| BslFI | GGGAC | 3 cut(s) | 860, 915, 1027 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 646, 965, 1398 |
| BsmAI | GTCTC | 2 cut(s) | 1012, 1334 |
| BsmFI | GGGAC | 3 cut(s) | 860, 915, 1027 |
| BsnI | GGCC | 5 cut(s) | 384, 617, 862, 878, 1363 |
| Bso31I | GGTCTC | 1 cut(s) | 1012 |
| BsoBI | CYCGRG | 1 cut(s) | 486 |
| Bsp1286I | GDGCHC | 4 cut(s) | 547, 1148, 1219, 1327 |
| Bsp143I | GATC | 4 cut(s) | 808, 830, 1374, 1388 |
| BspACI | CCGC | 3 cut(s) | 1273, 1295, 1409 |
| BspANI | GGCC | 5 cut(s) | 384, 617, 862, 878, 1363 |
| BspCNI | CTCAG | 2 cut(s) | 1234, 1371 |
| BspFNI | CGCG | 1 cut(s) | 1409 |
| BspLI | GGNNCC | 6 cut(s) | 539, 848, 849, 1218, 1270, 1324 |
| BspMAI | CTGCAG | 1 cut(s) | 874 |
| BspMI | ACCTGC | 1 cut(s) | 1315 |
| BspPI | GGATC | 2 cut(s) | 1369, 1383 |
| BspQI | GCTCTTC | 1 cut(s) | 1136 |
| BspT107I | GGYRCC | 1 cut(s) | 537 |
| BspTI | CTTAAG | 1 cut(s) | 425 |
| BspTNI | GGTCTC | 1 cut(s) | 1012 |
| BsrDI | GCAATG | 1 cut(s) | 206 |
| BsrI | ACTGG | 4 cut(s) | 130, 1023, 1327, 1348 |
| BssECI | CCNNGG | 1 cut(s) | 1174 |
| BssMI | GATC | 4 cut(s) | 808, 830, 1374, 1388 |
| Bst2UI | CCWGG | 3 cut(s) | 1112, 1176, 1383 |
| Bst4CI | ACNGT | 3 cut(s) | 100, 510, 765 |
| Bst6I | CTCTTC | 1 cut(s) | 1136 |
| BstAFI | CTTAAG | 1 cut(s) | 425 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1297 |
| BstBAI | YACGTR | 2 cut(s) | 523, 1223 |
| BstC8I | GCNNGC | 3 cut(s) | 108, 1065, 1277 |
| BstDEI | CTNAG | 2 cut(s) | 1242, 1358 |
| BstEII | GGTNACC | 1 cut(s) | 445 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1396 |
| BstF5I | GGATG | 3 cut(s) | 223, 920, 1120 |
| BstFNI | CGCG | 1 cut(s) | 1409 |
| BstHHI | GCGC | 1 cut(s) | 1092 |
| BstKTI | GATC | 4 cut(s) | 811, 833, 1377, 1391 |
| BstMAI | GTCTC | 2 cut(s) | 1012, 1334 |
| BstMBI | GATC | 4 cut(s) | 808, 830, 1374, 1388 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 605, 614, 875, 1297, 1316 |
| BstNI | CCWGG | 3 cut(s) | 1112, 1176, 1383 |
| BstNSI | RCATGY | 2 cut(s) | 397, 1067 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 477 |
| BstPI | GGTNACC | 1 cut(s) | 445 |
| BstSCI | CCNGG | 4 cut(s) | 646, 1110, 1174, 1381 |
| BstSFI | CTRYAG | 3 cut(s) | 870, 1071, 1191 |
| BstUI | CGCG | 1 cut(s) | 1409 |
| BstV1I | GCAGC | 5 cut(s) | 13, 856, 1000, 1099, 1284 |
| BstV2I | GAAGAC | 2 cut(s) | 182, 623 |
| BstX2I | RGATCY | 2 cut(s) | 1374, 1388 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1334 |
| BstYI | RGATCY | 2 cut(s) | 1374, 1388 |
| BsuRI | GGCC | 5 cut(s) | 384, 617, 862, 878, 1363 |
| BtgZI | GCGATG | 1 cut(s) | 614 |
| BtsCI | GGATG | 3 cut(s) | 223, 920, 1120 |
| BtsI | GCAGTG | 1 cut(s) | 691 |
| BtsIMutI | CAGTG | 5 cut(s) | 8, 513, 691, 1030, 1334 |
| BveI | ACCTGC | 1 cut(s) | 1315 |
| Cac8I | GCNNGC | 3 cut(s) | 108, 1065, 1277 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1199 |
| CfoI | GCGC | 1 cut(s) | 1092 |
| Cfr13I | GGNCC | 2 cut(s) | 847, 877 |
| CseI | GACGC | 1 cut(s) | 1289 |
| Csp6I | GTAC | 6 cut(s) | 58, 274, 307, 511, 538, 554 |
| CviAII | CATG | 9 cut(s) | 171, 263, 394, 613, 714, 812, 1064, 1258, 1312 |
| CviQI | GTAC | 6 cut(s) | 58, 274, 307, 511, 538, 554 |
| DdeI | CTNAG | 2 cut(s) | 1242, 1358 |
| DpnI | GATC | 4 cut(s) | 810, 832, 1376, 1390 |
| DpnII | GATC | 4 cut(s) | 808, 830, 1374, 1388 |
| DraIII | CACNNNGTG | 1 cut(s) | 1226 |
| EaeI | YGGCCR | 1 cut(s) | 615 |
| Eam1104I | CTCTTC | 1 cut(s) | 1136 |
| EarI | CTCTTC | 1 cut(s) | 1136 |
| Ecl136II | GAGCTC | 2 cut(s) | 545, 1146 |
| Eco147I | AGGCCT | 2 cut(s) | 384, 1363 |
| Eco24I | GRGCYC | 4 cut(s) | 547, 1148, 1219, 1327 |
| Eco31I | GGTCTC | 1 cut(s) | 1012 |
| Eco32I | GATATC | 1 cut(s) | 745 |
| Eco47I | GGWCC | 1 cut(s) | 847 |
| Eco53kI | GAGCTC | 2 cut(s) | 545, 1146 |
| Eco57I | CTGAAG | 3 cut(s) | 363, 545, 570 |
| Eco72I | CACGTG | 1 cut(s) | 1223 |
| Eco88I | CYCGRG | 1 cut(s) | 486 |
| Eco91I | GGTNACC | 1 cut(s) | 445 |
| EcoICRI | GAGCTC | 2 cut(s) | 545, 1146 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1396 |
| EcoO109I | RGGNCCY | 2 cut(s) | 847, 877 |
| EcoO65I | GGTNACC | 1 cut(s) | 445 |
| EcoRII | CCWGG | 3 cut(s) | 1110, 1174, 1381 |
| EcoRV | GATATC | 1 cut(s) | 745 |
| EcoT22I | ATGCAT | 2 cut(s) | 399, 1240 |
| EcoT38I | GRGCYC | 4 cut(s) | 547, 1148, 1219, 1327 |
| FaeI | CATG | 9 cut(s) | 174, 266, 397, 616, 717, 815, 1067, 1261, 1315 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 13, 45, 543, 575 |
| FaqI | GGGAC | 3 cut(s) | 860, 915, 1027 |
| FatI | CATG | 9 cut(s) | 170, 262, 393, 612, 713, 811, 1063, 1257, 1311 |
| FauI | CCCGC | 2 cut(s) | 1280, 1402 |
| FbaI | TGATCA | 1 cut(s) | 808 |
| FblI | GTMKAC | 1 cut(s) | 527 |
| Fnu4HI | GCNGC | 5 cut(s) | 27, 870, 989, 1088, 1298 |
| FokI | GGATG | 3 cut(s) | 210, 907, 1127 |
| FriOI | GRGCYC | 4 cut(s) | 547, 1148, 1219, 1327 |
| Fsp4HI | GCNGC | 5 cut(s) | 27, 870, 989, 1088, 1298 |
| FspBI | CTAG | 5 cut(s) | 804, 948, 999, 1038, 1398 |
| GlaI | GCGC | 1 cut(s) | 1091 |
| GluI | GCNGC | 5 cut(s) | 27, 870, 989, 1088, 1298 |
| GsuI | CTGGAG | 2 cut(s) | 866, 1341 |
| HaeIII | GGCC | 5 cut(s) | 384, 617, 862, 878, 1363 |
| HapII | CCGG | 1 cut(s) | 647 |
| HgaI | GACGC | 1 cut(s) | 1289 |
| HhaI | GCGC | 1 cut(s) | 1092 |
| Hin1II | CATG | 9 cut(s) | 174, 266, 397, 616, 717, 815, 1067, 1261, 1315 |
| Hin6I | GCGC | 1 cut(s) | 1090 |
| HinP1I | GCGC | 1 cut(s) | 1090 |
| HincII | GTYRAC | 1 cut(s) | 528 |
| HindII | GTYRAC | 1 cut(s) | 528 |
| HindIII | AAGCTT | 1 cut(s) | 332 |
| HinfI | GANTC | 4 cut(s) | 220, 497, 710, 793 |
| HpaII | CCGG | 1 cut(s) | 647 |
| HphI | GGTGA | 2 cut(s) | 92, 140 |
| Hpy166II | GTNNAC | 4 cut(s) | 513, 528, 1204, 1304 |
| Hpy188I | TCNGA | 5 cut(s) | 257, 356, 792, 1234, 1243 |
| Hpy188III | TCNNGA | 7 cut(s) | 42, 194, 419, 488, 548, 898, 1370 |
| Hpy8I | GTNNAC | 4 cut(s) | 513, 528, 1204, 1304 |
| HpyAV | CCTTC | 3 cut(s) | 861, 935, 1059 |
| HpyCH4III | ACNGT | 3 cut(s) | 100, 510, 765 |
| HpyCH4IV | ACGT | 2 cut(s) | 522, 1222 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 605, 614, 875, 1297, 1316 |
| HpyF3I | CTNAG | 2 cut(s) | 1242, 1358 |
| HpySE526I | ACGT | 2 cut(s) | 522, 1222 |
| Hsp92II | CATG | 9 cut(s) | 174, 266, 397, 616, 717, 815, 1067, 1261, 1315 |
| HspAI | GCGC | 1 cut(s) | 1090 |
| KflI | GGGWCCC | 1 cut(s) | 847 |
| KpnI | GGTACC | 1 cut(s) | 541 |
| Ksp22I | TGATCA | 1 cut(s) | 808 |
| Kzo9I | GATC | 4 cut(s) | 808, 830, 1374, 1388 |
| LguI | GCTCTTC | 1 cut(s) | 1136 |
| LmnI | GCTCC | 5 cut(s) | 550, 977, 985, 1222, 1322 |
| Lsp1109I | GCAGC | 5 cut(s) | 13, 856, 1000, 1099, 1284 |
| LweI | GCATC | 4 cut(s) | 406, 1105, 1225, 1247 |
| MaeI | CTAG | 5 cut(s) | 804, 948, 999, 1038, 1398 |
| MaeII | ACGT | 2 cut(s) | 522, 1222 |
| MaeIII | GTNAC | 2 cut(s) | 419, 445 |
| MalI | GATC | 4 cut(s) | 810, 832, 1376, 1390 |
| MboI | GATC | 4 cut(s) | 808, 830, 1374, 1388 |
| MboII | GAAGA | 7 cut(s) | 57, 166, 182, 623, 777, 886, 1153 |
| MfeI | CAATTG | 1 cut(s) | 1263 |
| MflI | RGATCY | 2 cut(s) | 1374, 1388 |
| MhlI | GDGCHC | 4 cut(s) | 547, 1148, 1219, 1327 |
| MluCI | AATT | 8 cut(s) | 358, 465, 492, 678, 755, 816, 1094, 1263 |
| MmeI | TCCRAC | 2 cut(s) | 963, 1402 |
| MnlI | CCTC | 8 cut(s) | 48, 49, 169, 833, 852, 868, 890, 1207 |
| Mph1103I | ATGCAT | 2 cut(s) | 399, 1240 |
| MseI | TTAA | 6 cut(s) | 65, 114, 201, 300, 426, 458 |
| MslI | CAYNNNNRTG | 2 cut(s) | 402, 1082 |
| MspA1I | CMGCKG | 2 cut(s) | 869, 1297 |
| MspCI | CTTAAG | 1 cut(s) | 425 |
| MspI | CCGG | 1 cut(s) | 647 |
| MspR9I | CCNGG | 4 cut(s) | 648, 1112, 1176, 1383 |
| MunI | CAATTG | 1 cut(s) | 1263 |
| MvaI | CCWGG | 3 cut(s) | 1112, 1176, 1383 |
| MvnI | CGCG | 1 cut(s) | 1409 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 605, 614, 875, 1297, 1316 |
| NciI | CCSGG | 1 cut(s) | 648 |
| NdeII | GATC | 4 cut(s) | 808, 830, 1374, 1388 |
| NlaIII | CATG | 9 cut(s) | 174, 266, 397, 616, 717, 815, 1067, 1261, 1315 |
| NlaIV | GGNNCC | 6 cut(s) | 539, 848, 849, 1218, 1270, 1324 |
| NmeAIII | GCCGAG | 1 cut(s) | 643 |
| NmuCI | GTSAC | 1 cut(s) | 419 |
| NsiI | ATGCAT | 2 cut(s) | 399, 1240 |
| NspI | RCATGY | 2 cut(s) | 397, 1067 |
| OliI | CACNNNNGTG | 1 cut(s) | 1082 |
| PaeI | GCATGC | 1 cut(s) | 1067 |
| PaqCI | CACCTGC | 1 cut(s) | 1315 |
| PceI | AGGCCT | 2 cut(s) | 384, 1363 |
| PciSI | GCTCTTC | 1 cut(s) | 1136 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 538, 1219 |
| PfeI | GAWTC | 4 cut(s) | 220, 497, 710, 793 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 965 |
| PkrI | GCNGC | 5 cut(s) | 28, 871, 990, 1089, 1299 |
| PmaCI | CACGTG | 1 cut(s) | 1223 |
| PmlI | CACGTG | 1 cut(s) | 1223 |
| Ppu21I | YACGTR | 2 cut(s) | 523, 1223 |
| PpuMI | RGGWCCY | 1 cut(s) | 847 |
| PshAI | GACNNNNGTC | 1 cut(s) | 477 |
| PshBI | ATTAAT | 1 cut(s) | 114 |
| Psp124BI | GAGCTC | 2 cut(s) | 547, 1148 |
| Psp5II | RGGWCCY | 1 cut(s) | 847 |
| Psp6I | CCWGG | 3 cut(s) | 1110, 1174, 1381 |
| PspCI | CACGTG | 1 cut(s) | 1223 |
| PspEI | GGTNACC | 1 cut(s) | 445 |
| PspGI | CCWGG | 3 cut(s) | 1110, 1174, 1381 |
| PspN4I | GGNNCC | 6 cut(s) | 539, 848, 849, 1218, 1270, 1324 |
| PspPI | GGNCC | 2 cut(s) | 847, 877 |
| PspPPI | RGGWCCY | 1 cut(s) | 847 |
| PstI | CTGCAG | 1 cut(s) | 874 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1199 |
| PsuI | RGATCY | 2 cut(s) | 1374, 1388 |
| PvuII | CAGCTG | 1 cut(s) | 869 |
| RsaI | GTAC | 6 cut(s) | 59, 275, 308, 512, 539, 555 |
| RsaNI | GTAC | 6 cut(s) | 58, 274, 307, 511, 538, 554 |
| RseI | CAYNNNNRTG | 2 cut(s) | 402, 1082 |
| SacI | GAGCTC | 2 cut(s) | 547, 1148 |
| SalI | GTCGAC | 1 cut(s) | 526 |
| SapI | GCTCTTC | 1 cut(s) | 1136 |
| SaqAI | TTAA | 6 cut(s) | 65, 114, 201, 300, 426, 458 |
| SatI | GCNGC | 5 cut(s) | 27, 870, 989, 1088, 1298 |
| Sau3AI | GATC | 4 cut(s) | 808, 830, 1374, 1388 |
| Sau96I | GGNCC | 2 cut(s) | 847, 877 |
| ScaI | AGTACT | 1 cut(s) | 555 |
| ScrFI | CCNGG | 4 cut(s) | 648, 1112, 1176, 1383 |
| SduI | GDGCHC | 4 cut(s) | 547, 1148, 1219, 1327 |
| SfaNI | GCATC | 4 cut(s) | 406, 1105, 1225, 1247 |
| SfcI | CTRYAG | 3 cut(s) | 870, 1071, 1191 |
| SinI | GGWCC | 1 cut(s) | 847 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 402, 1082 |
| SmlI | CTYRAG | 2 cut(s) | 242, 425 |
| SmoI | CTYRAG | 2 cut(s) | 242, 425 |
| SphI | GCATGC | 1 cut(s) | 1067 |
| Sse9I | AATT | 8 cut(s) | 358, 465, 492, 678, 755, 816, 1094, 1263 |
| SseBI | AGGCCT | 2 cut(s) | 384, 1363 |
| SsiI | CCGC | 3 cut(s) | 1273, 1295, 1409 |
| SspI | AATATT | 1 cut(s) | 232 |
| SspMI | CTAG | 5 cut(s) | 804, 948, 999, 1038, 1398 |
| SstI | GAGCTC | 2 cut(s) | 547, 1148 |
| StuI | AGGCCT | 2 cut(s) | 384, 1363 |
| StyD4I | CCNGG | 4 cut(s) | 646, 1110, 1174, 1381 |
| TaaI | ACNGT | 3 cut(s) | 100, 510, 765 |
| TaiI | ACGT | 2 cut(s) | 525, 1225 |
| TaqI | TCGA | 3 cut(s) | 193, 527, 1253 |
| TasI | AATT | 8 cut(s) | 358, 465, 492, 678, 755, 816, 1094, 1263 |
| TatI | WGTACW | 2 cut(s) | 273, 553 |
| TfiI | GAWTC | 4 cut(s) | 220, 497, 710, 793 |
| Tru1I | TTAA | 6 cut(s) | 65, 114, 201, 300, 426, 458 |
| Tru9I | TTAA | 6 cut(s) | 65, 114, 201, 300, 426, 458 |
| TscAI | CASTG | 5 cut(s) | 15, 520, 691, 1030, 1334 |
| TseFI | GTSAC | 1 cut(s) | 419 |
| TseI | GCWGC | 5 cut(s) | 26, 869, 988, 1087, 1297 |
| Tsp45I | GTSAC | 1 cut(s) | 419 |
| TspDTI | ATGAA | 9 cut(s) | 159, 167, 233, 332, 404, 702, 719, 767, 1328 |
| TspRI | CASTG | 5 cut(s) | 15, 520, 691, 1030, 1334 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 965 |
| Vha464I | CTTAAG | 1 cut(s) | 425 |
| VpaK11BI | GGWCC | 1 cut(s) | 847 |
| VspI | ATTAAT | 1 cut(s) | 114 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1396 |
| XapI | RAATTY | 1 cut(s) | 678 |
| XceI | RCATGY | 2 cut(s) | 397, 1067 |
| XmiI | GTMKAC | 1 cut(s) | 527 |
| XspI | CTAG | 5 cut(s) | 804, 948, 999, 1038, 1398 |
| ZrmI | AGTACT | 1 cut(s) | 555 |
| Zsp2I | ATGCAT | 2 cut(s) | 399, 1240 |