Rorug07G0079000
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
6129096 .. 6132250
3155 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0079000.1

Sequence Viewer

Length: 1260 bp
ATGCCATCCAGAGTTAGTGGTTTTATTAAAAATAAGCAATGGGCAATTCCTCCTATCTTTTCTTTTTTCTTTCCAGATCTTGCTTCAAGAATTTCTAATGTGGTGTTGCCTCTGGAAAATGAGGGGGACCAAGTCATCTGGCCTTCTAATGCAGCAGGCATTTTAACAACCAAGGATGCTTTCATGTTTCTCTCGCCACCTAGGCCTTTAGTAACCTGGTGCAAGTTGATTTGGAATAAGGCTTTACAGCCCCGCAAGAGCCTAGTGACTTGGAAGGTCTTAAAACAGAGGATTTTAACTGATGACTTGTTAGCAAGAAGGGGTATTTGTCTCTACTCTCAGTGCTCTATTTGTCAAATACAGGGTGAGTCTTTAAATCATCTTTTCTATGAGTGCGATTTAATCCATGATTTTTGGAGTTGGCTTGCTTCTTTTTTCCACAAGAGTATTATGCCGGGTACATCTCTTGCTGATCTTCTCTCCCCAGATTTTCTAAATGGGATGACTAGTGCTTCAAAAACTCTATGGAGTTTTGCTTTTTGCAATGCTCTGTGGTGCATATGGTCGGAGAGAAACAAAATCCGGTTTCATGAAGCTACTTTTCATTTAGCACGGTTCAAGCATTGGTTTCTACTTTCTCTGAAAGAGTCTGCCTCCATTCACTTTATGCCATGCTCTAACCCTTTGAGAATGCAAGGCCTATTCGCCGTGCTAGGTCTTTCGTCCCTGACTGTAAAGGCTCCAAAATATATCCCAGTGCAATGGATCCCCCCCCCCCCAATGCATTGGTTGAAGGTGAATACTGATGGTTCTTTTCGAGACAATAGCACAGCTGGATTTGGGGGGATTTTTAGAGATTATGAGGGTCAGTTTAGAGGAGCTTTTGCTAAAAAAGTGGAGACTCTCAGTGCAATTGATGCGGAAGTGTTGGCAGTTATTGAGGCTTTGAGGATTGCTTGGGTTAAGAGTTGGACTCACATCTGGCTCGAAACCGACTCCATGTTGGTGGTTCACTATTTCAAGAATCCAAAGTTAGTTCCATGGAGGCTATGGAGGGCATGGTCTAACTGTTTGTCTTTCACCCGTATGATCCATTTTCGAGTCTCTCATACTTTCCGGGAGGGGAACACTGTTGCTGATGCTCTTGCTAATCATGGTGCGTTCAATGCGGGTTATAGCTGGTGGGATGACCTTCCATCCTTTATTGCTGGTCATTATGGGCGCGACCTGTCTTCTATGGTTTATTATAGATTTCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

419

Amino Acids

48.3

Weight (kDa)

9.37

Isoelectric Point (pI)

34.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 56 - 139 5.8e-19 zinc-binding in reverse transcriptase
RVT_3 PF13456 267 - 385 1.5e-19 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000445)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19110 AT4G19110 AT4G19110 AT5G45430 AT5G45430
fragaria_vesca FvH4_2g16890 FvH4_5g19220 FvH4_5g19340 FvH4_5g19350 FvH4_5g19360 FvH4_5g23910 FvH4_7g27810
malus_domestica MD00G1001400.v1.1 MD04G1058900.v1.1 MD04G1059300.v1.1 MD04G1059500.v1.1 MD04G1059600.v1.1 MD04G1059800.v1.1 MD04G1061700.v1.1 MD04G1061800.v1.1 MD06G1014800.v1.1 MD06G1052900.v1.1 MD06G1055500.v1.1
prunus_persica Prupe.5G021300_v2.0.a1 Prupe.5G065900_v2.0.a1 Prupe.5G066500_v2.0.a1
pyrus_communis pycom06g04440
rosa_chinensis RchiOBHm_Chr1g0374681 RchiOBHm_Chr2g0120471 RchiOBHm_Chr2g0120711 RchiOBHm_Chr7g0203821 RchiOBHm_Chr7g0203861 RchiOBHm_Chr7g0208401 RchiOBHm_Chr7g0209011 RchiOBHm_Chr7g0213341
rosa_laevigata RLG00000001348 RLG00000002813 RLG00000003173 RLG00000003212 RLG00000003503 RLG00000022835 RLG00000026723 RLG00000035532
rosa_multiflora Rmu_co7960007.1_g000001 Rmu_co7963796.1_g000001 Rmu_co8519951.1_g000002 Rmu_sc0002038.1_g000009 Rmu_sc0004947.1_g000015 Rmu_sc0007490.1_g000005 Rmu_sc0011180.1_g000003 Rmu_sc0015273.1_g000013 Rmu_ssc0000190.1_g000014 Rmu_ssc0000372.1_g000031
rosa_roxburghii Rroxscaffold_3G00246080 Rroxscaffold_3G00249860 Rroxscaffold_3G00249870 Rroxscaffold_3G00253500 Rroxscaffold_4G00283340
rosa_rugosa Rorug01G0384300 Rorug07G0079000 Rorug07G0079000 Rorug07G0079000 Rorug07G0108300 Rorug07G0141200
rosa_samantha Rh1AG395700 Rh1BG359900 Rh1DG006600 Rh1DG390900 Rh2AG287100 Rh3BG335800 Rh3CG321100 Rh5DG116800 Rh7AG273000 Rh7BG207600 Rh7BG207800 Rh7BG237700 Rh7BG268400 Rh7CG221100 Rh7CG221300 Rh7CG254000 Rh7CG257900 Rh7CG292200 Rh7DG215700 Rh7DG215900 Rh7DG244500 Rh7DG249800 Rh7DG280700
rosa_wichuraiana Rw0G010370 Rw1G035090 Rw2G023020 Rw7G018200 Rw7G020570 Rw7G023690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1224
AciI CCGC 3 cut(s) 253, 920, 1169
AclWI GGATC 3 cut(s) 760, 773, 1084
AcsI RAATTY 1 cut(s) 90
AfaI GTAC 1 cut(s) 460
AgsI TTSAA 6 cut(s) 87, 516, 619, 793, 1021, 1165
AhlI ACTAGT 1 cut(s) 506
AjnI CCWGG 1 cut(s) 215
AjuI GAANNNNNNNTTGG 2 cut(s) 164, 196
AluBI AGCT 4 cut(s) 596, 833, 881, 1179
AluI AGCT 4 cut(s) 596, 833, 881, 1179
Alw21I GWGCWC 1 cut(s) 347
Alw26I GTCTC 4 cut(s) 335, 813, 893, 1108
AlwI GGATC 3 cut(s) 760, 773, 1084
AoxI GGCC 3 cut(s) 140, 203, 697
ApeKI GCWGC 1 cut(s) 152
ApoI RAATTY 1 cut(s) 90
AspA2I CCTAGG 1 cut(s) 200
AspLEI GCGC 1 cut(s) 1224
AspS9I GGNCC 1 cut(s) 127
AsuC2I CCSGG 2 cut(s) 456, 1118
AsuHPI GGTGA 3 cut(s) 377, 808, 1072
AvaII GGWCC 1 cut(s) 127
AvrII CCTAGG 1 cut(s) 200
BamHI GGATCC 1 cut(s) 765
BbsI GAAGAC 1 cut(s) 1224
Bbv12I GWGCWC 1 cut(s) 347
BbvI GCAGC 1 cut(s) 164
BccI CCATC 3 cut(s) 13, 800, 1204
BceAI ACGGC 1 cut(s) 692
BciT130I CCWGG 1 cut(s) 217
BcnI CCSGG 2 cut(s) 456, 1118
BcoDI GTCTC 4 cut(s) 335, 813, 893, 1108
BcuI ACTAGT 1 cut(s) 506
BfaI CTAG 4 cut(s) 201, 263, 507, 713
BglI GCCNNNNNGGC 1 cut(s) 202
BglII AGATCT 1 cut(s) 76
BisI GCNGC 1 cut(s) 153
BlnI CCTAGG 1 cut(s) 200
BlsI GCNGC 1 cut(s) 154
Bme1390I CCNGG 3 cut(s) 217, 456, 1118
Bme18I GGWCC 1 cut(s) 127
BmgT120I GGNCC 1 cut(s) 127
BmiI GGNNCC 3 cut(s) 128, 741, 767
BmrFI CCNGG 3 cut(s) 217, 456, 1118
BmrI ACTGGG 1 cut(s) 749
BmsI GCATC 3 cut(s) 166, 907, 1129
BmuI ACTGGG 1 cut(s) 749
BpiI GAAGAC 1 cut(s) 1224
BplI GAGNNNNNCTC 4 cut(s) 638, 670, 958, 990
BpuMI CCSGG 2 cut(s) 456, 1118
BsaJI CCNNGG 3 cut(s) 171, 200, 1040
BsaWI WCCGGW 1 cut(s) 582
Bse1I ACTGG 1 cut(s) 755
Bse3DI GCAATG 3 cut(s) 44, 550, 767
BseBI CCWGG 1 cut(s) 217
BseDI CCNNGG 3 cut(s) 171, 200, 1040
BseGI GGATG 5 cut(s) 5, 181, 507, 1192, 1196
BseMI GCAATG 3 cut(s) 44, 550, 767
BseMII CTCAG 2 cut(s) 353, 919
BseNI ACTGG 1 cut(s) 755
BseRI GAGGAG 1 cut(s) 891
BseXI GCAGC 1 cut(s) 164
Bsh1236I CGCG 1 cut(s) 1224
BshFI GGCC 3 cut(s) 142, 205, 699
BsiHKAI GWGCWC 1 cut(s) 347
BsiSI CCGG 3 cut(s) 455, 583, 1117
BslFI GGGAC 2 cut(s) 140, 709
BsmAI GTCTC 4 cut(s) 335, 813, 893, 1108
BsmFI GGGAC 2 cut(s) 140, 709
BsmI GAATGC 1 cut(s) 696
BsnI GGCC 3 cut(s) 142, 205, 699
Bsp1286I GDGCHC 1 cut(s) 347
Bsp143I GATC 4 cut(s) 76, 472, 765, 1089
Bsp19I CCATGG 1 cut(s) 1040
BspACI CCGC 3 cut(s) 253, 920, 1169
BspANI GGCC 3 cut(s) 142, 205, 699
BspCNI CTCAG 2 cut(s) 352, 918
BspFNI CGCG 1 cut(s) 1224
BspHI TCATGA 1 cut(s) 589
BspLI GGNNCC 3 cut(s) 128, 741, 767
BspPI GGATC 3 cut(s) 760, 773, 1084
BsrDI GCAATG 3 cut(s) 44, 550, 767
BsrI ACTGG 1 cut(s) 755
BssECI CCNNGG 3 cut(s) 171, 200, 1040
BssMI GATC 4 cut(s) 76, 472, 765, 1089
BssT1I CCWWGG 3 cut(s) 171, 200, 1040
Bst2UI CCWGG 1 cut(s) 217
Bst4CI ACNGT 4 cut(s) 615, 733, 1070, 1132
BstAPI GCANNNNNTGC 1 cut(s) 917
BstC8I GCNNGC 2 cut(s) 157, 426
BstDEI CTNAG 2 cut(s) 339, 905
BstDSI CCRYGG 1 cut(s) 1040
BstF5I GGATG 5 cut(s) 5, 181, 507, 1192, 1196
BstFNI CGCG 1 cut(s) 1224
BstHHI GCGC 1 cut(s) 1224
BstKTI GATC 4 cut(s) 79, 475, 768, 1092
BstMAI GTCTC 4 cut(s) 335, 813, 893, 1108
BstMBI GATC 4 cut(s) 76, 472, 765, 1089
BstMWI GCNNNNNNNGC 3 cut(s) 202, 917, 1166
BstNI CCWGG 1 cut(s) 217
BstSCI CCNGG 3 cut(s) 215, 454, 1116
BstUI CGCG 1 cut(s) 1224
BstV1I GCAGC 1 cut(s) 164
BstV2I GAAGAC 1 cut(s) 1224
BstX2I RGATCY 2 cut(s) 76, 765
BstXI CCANNNNNNTGG 3 cut(s) 762, 786, 1006
BstYI RGATCY 2 cut(s) 76, 765
BsuRI GGCC 3 cut(s) 142, 205, 699
BtgI CCRYGG 1 cut(s) 1040
BtsCI GGATG 5 cut(s) 5, 181, 507, 1192, 1196
BtsIMutI CAGTG 4 cut(s) 347, 762, 913, 1128
Cac8I GCNNGC 2 cut(s) 157, 426
CciI TCATGA 1 cut(s) 589
CfoI GCGC 1 cut(s) 1224
Cfr13I GGNCC 1 cut(s) 127
CsiI ACCWGGT 1 cut(s) 215
Csp6I GTAC 1 cut(s) 459
CviAII CATG 8 cut(s) 184, 407, 590, 672, 1000, 1041, 1059, 1154
CviQI GTAC 1 cut(s) 459
DdeI CTNAG 2 cut(s) 339, 905
DpnI GATC 4 cut(s) 78, 474, 767, 1091
DpnII GATC 4 cut(s) 76, 472, 765, 1089
DraI TTTAAA 1 cut(s) 375
Eco130I CCWWGG 3 cut(s) 171, 200, 1040
Eco147I AGGCCT 2 cut(s) 205, 699
Eco47I GGWCC 1 cut(s) 127
EcoRII CCWGG 1 cut(s) 215
EcoT14I CCWWGG 3 cut(s) 171, 200, 1040
EcoT22I ATGCAT 1 cut(s) 786
ErhI CCWWGG 3 cut(s) 171, 200, 1040
FaeI CATG 8 cut(s) 187, 410, 593, 675, 1003, 1044, 1062, 1157
FaqI GGGAC 2 cut(s) 140, 709
FatI CATG 8 cut(s) 183, 406, 589, 671, 999, 1040, 1058, 1153
FauI CCCGC 2 cut(s) 260, 1162
FauNDI CATATG 1 cut(s) 560
Fnu4HI GCNGC 1 cut(s) 153
FokI GGATG 4 cut(s) 188, 514, 1183, 1199
Fsp4HI GCNGC 1 cut(s) 153
FspBI CTAG 4 cut(s) 201, 263, 507, 713
GlaI GCGC 1 cut(s) 1223
GluI GCNGC 1 cut(s) 153
HaeIII GGCC 3 cut(s) 142, 205, 699
HapII CCGG 3 cut(s) 455, 583, 1117
HhaI GCGC 1 cut(s) 1224
Hin1II CATG 8 cut(s) 187, 410, 593, 675, 1003, 1044, 1062, 1157
Hin6I GCGC 1 cut(s) 1222
HinP1I GCGC 1 cut(s) 1222
HinfI GANTC 7 cut(s) 368, 647, 901, 973, 995, 1024, 1101
HpaII CCGG 3 cut(s) 455, 583, 1117
HphI GGTGA 3 cut(s) 377, 808, 1072
Hpy166II GTNNAC 1 cut(s) 1012
Hpy188I TCNGA 2 cut(s) 568, 642
Hpy188III TCNNGA 7 cut(s) 9, 74, 87, 113, 590, 818, 1021
Hpy8I GTNNAC 1 cut(s) 1012
HpyAV CCTTC 5 cut(s) 153, 268, 312, 787, 1202
HpyCH4III ACNGT 4 cut(s) 615, 733, 1070, 1132
HpyCH4V TGCA 8 cut(s) 152, 222, 543, 558, 694, 760, 784, 911
HpyF10VI GCNNNNNNNGC 3 cut(s) 202, 917, 1166
HpyF3I CTNAG 2 cut(s) 339, 905
Hsp92II CATG 8 cut(s) 187, 410, 593, 675, 1003, 1044, 1062, 1157
HspAI GCGC 1 cut(s) 1222
Kzo9I GATC 4 cut(s) 76, 472, 765, 1089
LmnI GCTCC 2 cut(s) 745, 878
Lsp1109I GCAGC 1 cut(s) 164
LweI GCATC 3 cut(s) 166, 907, 1129
MabI ACCWGGT 1 cut(s) 215
MaeI CTAG 4 cut(s) 201, 263, 507, 713
MaeIII GTNAC 2 cut(s) 211, 265
MalI GATC 4 cut(s) 78, 474, 767, 1091
MboI GATC 4 cut(s) 76, 472, 765, 1089
MboII GAAGA 2 cut(s) 467, 1224
MfeI CAATTG 1 cut(s) 912
MflI RGATCY 2 cut(s) 76, 765
MhlI GDGCHC 1 cut(s) 347
MluCI AATT 3 cut(s) 45, 90, 912
MlyI GAGTC 6 cut(s) 377, 656, 895, 967, 989, 1110
MmeI TCCRAC 2 cut(s) 546, 950
Mph1103I ATGCAT 1 cut(s) 786
MseI TTAA 7 cut(s) 27, 164, 281, 296, 374, 401, 963
MslI CAYNNNNRTG 2 cut(s) 1004, 1085
MspA1I CMGCKG 1 cut(s) 833
MspI CCGG 3 cut(s) 455, 583, 1117
MspR9I CCNGG 3 cut(s) 217, 456, 1118
MunI CAATTG 1 cut(s) 912
Mva1269I GAATGC 1 cut(s) 696
MvaI CCWGG 1 cut(s) 217
MvnI CGCG 1 cut(s) 1224
MwoI GCNNNNNNNGC 3 cut(s) 202, 917, 1166
NciI CCSGG 2 cut(s) 456, 1118
NcoI CCATGG 1 cut(s) 1040
NdeI CATATG 1 cut(s) 560
NdeII GATC 4 cut(s) 76, 472, 765, 1089
NlaIII CATG 8 cut(s) 187, 410, 593, 675, 1003, 1044, 1062, 1157
NlaIV GGNNCC 3 cut(s) 128, 741, 767
NmuCI GTSAC 1 cut(s) 265
NsiI ATGCAT 1 cut(s) 786
PagI TCATGA 1 cut(s) 589
PceI AGGCCT 2 cut(s) 205, 699
PctI GAATGC 1 cut(s) 696
PfeI GAWTC 1 cut(s) 1024
PflFI GACNNNGTC 1 cut(s) 131
PfoI TCCNGGA 1 cut(s) 1116
PkrI GCNGC 1 cut(s) 154
PleI GAGTC 6 cut(s) 376, 655, 895, 967, 989, 1109
PpsI GAGTC 6 cut(s) 376, 655, 895, 967, 989, 1109
Psp6I CCWGG 1 cut(s) 215
PspGI CCWGG 1 cut(s) 215
PspN4I GGNNCC 3 cut(s) 128, 741, 767
PspPI GGNCC 1 cut(s) 127
PsuI RGATCY 2 cut(s) 76, 765
PsyI GACNNNGTC 1 cut(s) 131
PvuII CAGCTG 1 cut(s) 833
RsaI GTAC 1 cut(s) 460
RsaNI GTAC 1 cut(s) 459
RseI CAYNNNNRTG 2 cut(s) 1004, 1085
SaqAI TTAA 7 cut(s) 27, 164, 281, 296, 374, 401, 963
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 4 cut(s) 76, 472, 765, 1089
Sau96I GGNCC 1 cut(s) 127
SchI GAGTC 6 cut(s) 377, 656, 895, 967, 989, 1110
ScrFI CCNGG 3 cut(s) 217, 456, 1118
SduI GDGCHC 1 cut(s) 347
SexAI ACCWGGT 1 cut(s) 215
SfaNI GCATC 3 cut(s) 166, 907, 1129
SinI GGWCC 1 cut(s) 127
SmiMI CAYNNNNRTG 2 cut(s) 1004, 1085
SpeI ACTAGT 1 cut(s) 506
Sse9I AATT 3 cut(s) 45, 90, 912
SseBI AGGCCT 2 cut(s) 205, 699
SsiI CCGC 3 cut(s) 253, 920, 1169
SspMI CTAG 4 cut(s) 201, 263, 507, 713
StuI AGGCCT 2 cut(s) 205, 699
StyD4I CCNGG 3 cut(s) 215, 454, 1116
StyI CCWWGG 3 cut(s) 171, 200, 1040
TaaI ACNGT 4 cut(s) 615, 733, 1070, 1132
TaqI TCGA 3 cut(s) 817, 987, 1099
TasI AATT 3 cut(s) 45, 90, 912
TfiI GAWTC 1 cut(s) 1024
Tru1I TTAA 7 cut(s) 27, 164, 281, 296, 374, 401, 963
Tru9I TTAA 7 cut(s) 27, 164, 281, 296, 374, 401, 963
TscAI CASTG 4 cut(s) 347, 762, 913, 1135
TseFI GTSAC 1 cut(s) 265
TseI GCWGC 1 cut(s) 152
Tsp45I GTSAC 1 cut(s) 265
TspDTI ATGAA 4 cut(s) 172, 578, 593, 606
TspRI CASTG 4 cut(s) 347, 762, 913, 1135
Tth111I GACNNNGTC 1 cut(s) 131
VpaK11BI GGWCC 1 cut(s) 127
XapI RAATTY 1 cut(s) 90
XcmI CCANNNNNNNNNTGG 1 cut(s) 1047
XmaJI CCTAGG 1 cut(s) 200
XspI CTAG 4 cut(s) 201, 263, 507, 713
Zsp2I ATGCAT 1 cut(s) 786
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.