FvH4_5g19360
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000445
Physical Location & Seq
Forward (+)
11214584 .. 11215411
828 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g19360.t1

Sequence Viewer

Length: 828 bp
ATGGATAGATACCACCTGATCAAGAAAGTTGGTGAAGGTAGTTTTGGGCGGGTGTACCAGGCGATCGACCGCTTGACCGGACAATATGTGGCGATCAAACAGTTGAAGGCAAACTGCCATCCTATGTCGTATCTGCCGGAAGTCCGTGCTCTCCAAATCTTGCAGCACCCCAACGTAGTGAACTTCAAGGGAGTCCAACCCCAACACAATACCGTCTTCTTGGTTTTCGAGTACATGGACGGCAGCCTCCGTCATCTCATTAACCACAGGCTGAGGATGCGAGTCCGTTTCTCCGAAGACGAGATCAAATCATTTAGCTTCCAACTCTTGCAAGGCCTCGACTTCATGCATCGTCGACGCCGCTTCATGCACCGCGACGTAAAGCCGGAGAATCTCTTGGTCGACAAGCGTGGCGTCATCAAGATCTCGGATCTTGGTAGTGCTACGGAGATAGAATCATCCGGCGACCTATTCCACCATCATTACGTCACCACAAGGAGTTATAGAGCTCCGGAGATGCTGCTTCGAATGTTCTTGGAAAGCGAGAAGCTTCGACCGTTCGAGTACGATGAGAAAGTGGACATGTGGGCGGTGGGGGTAATCATAGCTGAGCTGCATCTCATGCGGCCTCTCTTCATCGCTAAGAGTTCTGCCGATCAGTTGAAAGAGATATGCAAAGTGATAGGGGCACCAACTTGGGAGTCATGGATGAACTGGCCTAAACTTAAGCCGGAGAAGGGTTTCGGGTTTCGAGCTTTAATGCCGAAGGCCAGTGAAACGGCTCTCGATCTCATTGTTGTCTTTGTGTTCCTGGGACCCTTCGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

276

Amino Acids

32.15

Weight (kDa)

9.33

Isoelectric Point (pI)

46.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 4 - 265 1.3e-56 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 5 - 206 2.7e-30 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000445)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19110 AT4G19110 AT4G19110 AT5G45430 AT5G45430
fragaria_vesca FvH4_2g16890 FvH4_5g19220 FvH4_5g19340 FvH4_5g19350 FvH4_5g19360 FvH4_5g23910 FvH4_7g27810
malus_domestica MD00G1001400.v1.1 MD04G1058900.v1.1 MD04G1059300.v1.1 MD04G1059500.v1.1 MD04G1059600.v1.1 MD04G1059800.v1.1 MD04G1061700.v1.1 MD04G1061800.v1.1 MD06G1014800.v1.1 MD06G1052900.v1.1 MD06G1055500.v1.1
prunus_persica Prupe.5G021300_v2.0.a1 Prupe.5G065900_v2.0.a1 Prupe.5G066500_v2.0.a1
pyrus_communis pycom06g04440
rosa_chinensis RchiOBHm_Chr1g0374681 RchiOBHm_Chr2g0120471 RchiOBHm_Chr2g0120711 RchiOBHm_Chr7g0203821 RchiOBHm_Chr7g0203861 RchiOBHm_Chr7g0208401 RchiOBHm_Chr7g0209011 RchiOBHm_Chr7g0213341
rosa_laevigata RLG00000001348 RLG00000002813 RLG00000003173 RLG00000003212 RLG00000003503 RLG00000022835 RLG00000026723 RLG00000035532
rosa_multiflora Rmu_co7960007.1_g000001 Rmu_co7963796.1_g000001 Rmu_co8519951.1_g000002 Rmu_sc0002038.1_g000009 Rmu_sc0004947.1_g000015 Rmu_sc0007490.1_g000005 Rmu_sc0011180.1_g000003 Rmu_sc0015273.1_g000013 Rmu_ssc0000190.1_g000014 Rmu_ssc0000372.1_g000031
rosa_roxburghii Rroxscaffold_3G00246080 Rroxscaffold_3G00249860 Rroxscaffold_3G00249870 Rroxscaffold_3G00253500 Rroxscaffold_4G00283340
rosa_rugosa Rorug01G0384300 Rorug07G0079000 Rorug07G0079000 Rorug07G0079000 Rorug07G0108300 Rorug07G0141200
rosa_samantha Rh1AG395700 Rh1BG359900 Rh1DG006600 Rh1DG390900 Rh2AG287100 Rh3BG335800 Rh3CG321100 Rh5DG116800 Rh7AG273000 Rh7BG207600 Rh7BG207800 Rh7BG237700 Rh7BG268400 Rh7CG221100 Rh7CG221300 Rh7CG254000 Rh7CG257900 Rh7CG292200 Rh7DG215700 Rh7DG215900 Rh7DG244500 Rh7DG249800 Rh7DG280700
rosa_wichuraiana Rw0G010370 Rw1G035090 Rw2G023020 Rw7G018200 Rw7G020570 Rw7G023690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 688
AccI GTMKAC 2 cut(s) 355, 402
AccII CGCG 1 cut(s) 375
AccIII TCCGGA 1 cut(s) 511
AciI CCGC 6 cut(s) 49, 70, 361, 373, 590, 625
AclWI GGATC 1 cut(s) 438
AcyI GRCGYC 2 cut(s) 358, 414
AfaI GTAC 3 cut(s) 56, 233, 566
AfiI CCNNNNNNNGG 1 cut(s) 737
AflII CTTAAG 1 cut(s) 725
AflIII ACRYGT 1 cut(s) 582
AgsI TTSAA 3 cut(s) 106, 187, 664
AjnI CCWGG 2 cut(s) 57, 810
AjuI GAANNNNNNNTTGG 2 cut(s) 27, 59
AluBI AGCT 6 cut(s) 318, 509, 550, 608, 613, 755
AluI AGCT 6 cut(s) 318, 509, 550, 608, 613, 755
Alw21I GWGCWC 2 cut(s) 151, 511
AlwI GGATC 1 cut(s) 438
Aor13HI TCCGGA 1 cut(s) 511
AoxI GGCC 4 cut(s) 334, 626, 716, 768
ApeKI GCWGC 4 cut(s) 163, 243, 520, 613
Asp700I GAANNNNTTC 1 cut(s) 740
AspS9I GGNCC 1 cut(s) 815
AsuHPI GGTGA 2 cut(s) 44, 481
AsuII TTCGAA 2 cut(s) 526, 822
AvaII GGWCC 1 cut(s) 815
BaeGI GKGCMC 1 cut(s) 691
BanI GGYRCC 1 cut(s) 688
BanII GRGCYC 1 cut(s) 511
BbsI GAAGAC 2 cut(s) 208, 303
Bbv12I GWGCWC 2 cut(s) 151, 511
BbvCI CCTCAGC 1 cut(s) 272
BbvI GCAGC 4 cut(s) 175, 255, 507, 600
BccI CCATC 2 cut(s) 126, 486
BceAI ACGGC 2 cut(s) 256, 795
BciT130I CCWGG 2 cut(s) 59, 812
BclI TGATCA 1 cut(s) 18
BfrI CTTAAG 1 cut(s) 725
BglII AGATCT 1 cut(s) 423
BisI GCNGC 6 cut(s) 164, 244, 361, 521, 614, 626
BlpI GCTNAGC 1 cut(s) 609
BlsI GCNGC 6 cut(s) 165, 245, 362, 522, 615, 627
Bme1390I CCNGG 2 cut(s) 59, 812
Bme18I GGWCC 1 cut(s) 815
BmgT120I GGNCC 1 cut(s) 815
BmiI GGNNCC 3 cut(s) 690, 816, 817
BmrFI CCNGG 2 cut(s) 59, 812
BmsI GCATC 4 cut(s) 267, 358, 507, 625
BpiI GAAGAC 2 cut(s) 208, 303
Bpu10I CCTNAGC 1 cut(s) 272
Bpu1102I GCTNAGC 1 cut(s) 609
Bpu14I TTCGAA 2 cut(s) 526, 822
BsaHI GRCGYC 2 cut(s) 358, 414
BsaJI CCNNGG 1 cut(s) 811
BsaWI WCCGGW 2 cut(s) 77, 511
Bsc4I CCNNNNNNNGG 1 cut(s) 737
Bse1I ACTGG 2 cut(s) 719, 771
BseAI TCCGGA 1 cut(s) 511
BseBI CCWGG 2 cut(s) 59, 812
BseDI CCNNGG 1 cut(s) 811
BseGI GGATG 4 cut(s) 118, 282, 458, 714
BseLI CCNNNNNNNGG 1 cut(s) 737
BseMII CTCAG 2 cut(s) 263, 600
BseNI ACTGG 2 cut(s) 719, 771
BseSI GKGCMC 1 cut(s) 691
BseXI GCAGC 4 cut(s) 175, 255, 507, 600
Bsh1236I CGCG 1 cut(s) 375
Bsh1285I CGRYCG 3 cut(s) 66, 70, 557
BshFI GGCC 4 cut(s) 336, 628, 718, 770
BshNI GGYRCC 1 cut(s) 688
BsiEI CGRYCG 3 cut(s) 66, 70, 557
BsiHKAI GWGCWC 2 cut(s) 151, 511
BsiSI CCGG 6 cut(s) 78, 137, 386, 462, 512, 731
BslI CCNNNNNNNGG 1 cut(s) 737
BsnI GGCC 4 cut(s) 336, 628, 718, 770
Bsp119I TTCGAA 2 cut(s) 526, 822
Bsp1286I GDGCHC 3 cut(s) 151, 511, 691
Bsp13I TCCGGA 1 cut(s) 511
Bsp143I GATC 8 cut(s) 18, 63, 93, 303, 423, 430, 655, 787
Bsp1720I GCTNAGC 1 cut(s) 609
BspACI CCGC 6 cut(s) 49, 70, 361, 373, 590, 625
BspANI GGCC 4 cut(s) 336, 628, 718, 770
BspCNI CTCAG 2 cut(s) 264, 601
BspEI TCCGGA 1 cut(s) 511
BspFNI CGCG 1 cut(s) 375
BspLI GGNNCC 3 cut(s) 690, 816, 817
BspPI GGATC 1 cut(s) 438
BspT104I TTCGAA 2 cut(s) 526, 822
BspT107I GGYRCC 1 cut(s) 688
BspTI CTTAAG 1 cut(s) 725
BsrI ACTGG 2 cut(s) 719, 771
BssECI CCNNGG 1 cut(s) 811
BssMI GATC 8 cut(s) 18, 63, 93, 303, 423, 430, 655, 787
BssNI GRCGYC 2 cut(s) 358, 414
Bst2UI CCWGG 2 cut(s) 59, 812
Bst4CI ACNGT 3 cut(s) 102, 214, 558
Bst6I CTCTTC 1 cut(s) 638
BstACI GRCGYC 2 cut(s) 358, 414
BstAFI CTTAAG 1 cut(s) 725
BstAPI GCANNNNNTGC 1 cut(s) 622
BstBI TTCGAA 2 cut(s) 526, 822
BstDEI CTNAG 3 cut(s) 272, 609, 642
BstF5I GGATG 4 cut(s) 118, 282, 458, 714
BstFNI CGCG 1 cut(s) 375
BstKTI GATC 8 cut(s) 21, 66, 96, 306, 426, 433, 658, 790
BstMBI GATC 8 cut(s) 18, 63, 93, 303, 423, 430, 655, 787
BstMCI CGRYCG 3 cut(s) 66, 70, 557
BstMWI GCNNNNNNNGC 2 cut(s) 277, 622
BstNI CCWGG 2 cut(s) 59, 812
BstNSI RCATGY 1 cut(s) 586
BstSCI CCNGG 2 cut(s) 57, 810
BstSLI GKGCMC 1 cut(s) 691
BstUI CGCG 1 cut(s) 375
BstV1I GCAGC 4 cut(s) 175, 255, 507, 600
BstV2I GAAGAC 2 cut(s) 208, 303
BstX2I RGATCY 2 cut(s) 423, 430
BstYI RGATCY 2 cut(s) 423, 430
BsuRI GGCC 4 cut(s) 336, 628, 718, 770
BtgZI GCGATG 1 cut(s) 622
BtsCI GGATG 4 cut(s) 118, 282, 458, 714
BtsIMutI CAGTG 1 cut(s) 778
Cfr13I GGNCC 1 cut(s) 815
CseI GACGC 2 cut(s) 366, 403
Csp6I GTAC 3 cut(s) 55, 232, 565
CviAII CATG 6 cut(s) 235, 346, 367, 583, 622, 705
CviQI GTAC 3 cut(s) 55, 232, 565
DdeI CTNAG 3 cut(s) 272, 609, 642
DpnI GATC 8 cut(s) 20, 65, 95, 305, 425, 432, 657, 789
DpnII GATC 8 cut(s) 18, 63, 93, 303, 423, 430, 655, 787
Eam1104I CTCTTC 1 cut(s) 638
EarI CTCTTC 1 cut(s) 638
Ecl136II GAGCTC 1 cut(s) 509
Eco147I AGGCCT 1 cut(s) 336
Eco24I GRGCYC 1 cut(s) 511
Eco47I GGWCC 1 cut(s) 815
Eco53kI GAGCTC 1 cut(s) 509
EcoICRI GAGCTC 1 cut(s) 509
EcoO109I RGGNCCY 1 cut(s) 815
EcoRII CCWGG 2 cut(s) 57, 810
EcoT22I ATGCAT 1 cut(s) 351
EcoT38I GRGCYC 1 cut(s) 511
FaeI CATG 6 cut(s) 238, 349, 370, 586, 625, 708
FatI CATG 6 cut(s) 234, 345, 366, 582, 621, 704
FauI CCCGC 1 cut(s) 42
FbaI TGATCA 1 cut(s) 18
FblI GTMKAC 2 cut(s) 355, 402
Fnu4HI GCNGC 6 cut(s) 164, 244, 361, 521, 614, 626
FokI GGATG 4 cut(s) 105, 289, 445, 721
FriOI GRGCYC 1 cut(s) 511
Fsp4HI GCNGC 6 cut(s) 164, 244, 361, 521, 614, 626
GluI GCNGC 6 cut(s) 164, 244, 361, 521, 614, 626
HaeIII GGCC 4 cut(s) 336, 628, 718, 770
HapII CCGG 6 cut(s) 78, 137, 386, 462, 512, 731
HgaI GACGC 2 cut(s) 366, 403
Hin1I GRCGYC 2 cut(s) 358, 414
Hin1II CATG 6 cut(s) 238, 349, 370, 586, 625, 708
HincII GTYRAC 2 cut(s) 356, 403
HindII GTYRAC 2 cut(s) 356, 403
HindIII AAGCTT 1 cut(s) 548
HinfI GANTC 5 cut(s) 192, 282, 391, 455, 701
HpaII CCGG 6 cut(s) 78, 137, 386, 462, 512, 731
HphI GGTGA 2 cut(s) 44, 481
Hpy166II GTNNAC 5 cut(s) 55, 181, 356, 403, 580
Hpy188I TCNGA 2 cut(s) 295, 430
Hpy188III TCNNGA 4 cut(s) 22, 421, 512, 785
Hpy8I GTNNAC 5 cut(s) 55, 181, 356, 403, 580
Hpy99I CGWCG 3 cut(s) 357, 360, 380
HpyAV CCTTC 4 cut(s) 29, 100, 730, 760
HpyCH4III ACNGT 3 cut(s) 102, 214, 558
HpyCH4IV ACGT 3 cut(s) 174, 378, 486
HpyCH4V TGCA 6 cut(s) 163, 331, 349, 370, 616, 675
HpyF10VI GCNNNNNNNGC 2 cut(s) 277, 622
HpyF3I CTNAG 3 cut(s) 272, 609, 642
HpySE526I ACGT 3 cut(s) 174, 378, 486
Hsp92I GRCGYC 2 cut(s) 358, 414
Hsp92II CATG 6 cut(s) 238, 349, 370, 586, 625, 708
KflI GGGWCCC 1 cut(s) 815
Kpn2I TCCGGA 1 cut(s) 511
Ksp22I TGATCA 1 cut(s) 18
Kzo9I GATC 8 cut(s) 18, 63, 93, 303, 423, 430, 655, 787
LmnI GCTCC 1 cut(s) 514
Lsp1109I GCAGC 4 cut(s) 175, 255, 507, 600
LweI GCATC 4 cut(s) 267, 358, 507, 625
MaeII ACGT 3 cut(s) 174, 378, 486
MaeIII GTNAC 1 cut(s) 487
MalI GATC 8 cut(s) 20, 65, 95, 305, 425, 432, 657, 789
MboI GATC 8 cut(s) 18, 63, 93, 303, 423, 430, 655, 787
MboII GAAGA 3 cut(s) 208, 308, 625
MflI RGATCY 2 cut(s) 423, 430
MhlI GDGCHC 3 cut(s) 151, 511, 691
MlyI GAGTC 3 cut(s) 201, 291, 710
MmeI TCCRAC 2 cut(s) 220, 346
MnlI CCTC 4 cut(s) 257, 267, 347, 639
Mph1103I ATGCAT 1 cut(s) 351
MroI TCCGGA 1 cut(s) 511
MroXI GAANNNNTTC 1 cut(s) 740
MseI TTAA 3 cut(s) 261, 726, 758
MspCI CTTAAG 1 cut(s) 725
MspI CCGG 6 cut(s) 78, 137, 386, 462, 512, 731
MspR9I CCNGG 2 cut(s) 59, 812
MvaI CCWGG 2 cut(s) 59, 812
MvnI CGCG 1 cut(s) 375
MwoI GCNNNNNNNGC 2 cut(s) 277, 622
NdeII GATC 8 cut(s) 18, 63, 93, 303, 423, 430, 655, 787
NlaIII CATG 6 cut(s) 238, 349, 370, 586, 625, 708
NlaIV GGNNCC 3 cut(s) 690, 816, 817
NmuCI GTSAC 1 cut(s) 487
NsiI ATGCAT 1 cut(s) 351
NspI RCATGY 1 cut(s) 586
NspV TTCGAA 2 cut(s) 526, 822
PceI AGGCCT 1 cut(s) 336
PciI ACATGT 1 cut(s) 582
PdmI GAANNNNTTC 1 cut(s) 740
PfeI GAWTC 2 cut(s) 391, 455
PkrI GCNGC 6 cut(s) 165, 245, 362, 522, 615, 627
Ple19I CGATCG 1 cut(s) 66
PleI GAGTC 3 cut(s) 200, 290, 709
PpsI GAGTC 3 cut(s) 200, 290, 709
PpuMI RGGWCCY 1 cut(s) 815
PscI ACATGT 1 cut(s) 582
Psp124BI GAGCTC 1 cut(s) 511
Psp5II RGGWCCY 1 cut(s) 815
Psp6I CCWGG 2 cut(s) 57, 810
PspGI CCWGG 2 cut(s) 57, 810
PspN4I GGNNCC 3 cut(s) 690, 816, 817
PspPI GGNCC 1 cut(s) 815
PspPPI RGGWCCY 1 cut(s) 815
PsuI RGATCY 2 cut(s) 423, 430
PvuI CGATCG 1 cut(s) 66
RsaI GTAC 3 cut(s) 56, 233, 566
RsaNI GTAC 3 cut(s) 55, 232, 565
SacI GAGCTC 1 cut(s) 511
SalI GTCGAC 2 cut(s) 354, 401
SaqAI TTAA 3 cut(s) 261, 726, 758
SatI GCNGC 6 cut(s) 164, 244, 361, 521, 614, 626
Sau3AI GATC 8 cut(s) 18, 63, 93, 303, 423, 430, 655, 787
Sau96I GGNCC 1 cut(s) 815
SchI GAGTC 3 cut(s) 201, 291, 710
ScrFI CCNGG 2 cut(s) 59, 812
SduI GDGCHC 3 cut(s) 151, 511, 691
SfaNI GCATC 4 cut(s) 267, 358, 507, 625
SfuI TTCGAA 2 cut(s) 526, 822
SgrDI CGTCGACG 1 cut(s) 354
SinI GGWCC 1 cut(s) 815
SmlI CTYRAG 1 cut(s) 725
SmoI CTYRAG 1 cut(s) 725
SseBI AGGCCT 1 cut(s) 336
SsiI CCGC 6 cut(s) 49, 70, 361, 373, 590, 625
SstI GAGCTC 1 cut(s) 511
StuI AGGCCT 1 cut(s) 336
StyD4I CCNGG 2 cut(s) 57, 810
TaaI ACNGT 3 cut(s) 102, 214, 558
TaiI ACGT 3 cut(s) 177, 381, 489
TatI WGTACW 1 cut(s) 231
TauI GCSGC 2 cut(s) 363, 628
TfiI GAWTC 2 cut(s) 391, 455
Tru1I TTAA 3 cut(s) 261, 726, 758
Tru9I TTAA 3 cut(s) 261, 726, 758
TscAI CASTG 1 cut(s) 778
TseFI GTSAC 1 cut(s) 487
TseI GCWGC 4 cut(s) 163, 243, 520, 613
Tsp45I GTSAC 1 cut(s) 487
TspDTI ATGAA 4 cut(s) 334, 355, 625, 725
TspGWI ACGGA 4 cut(s) 134, 239, 275, 461
TspRI CASTG 1 cut(s) 778
Vha464I CTTAAG 1 cut(s) 725
VpaK11BI GGWCC 1 cut(s) 815
XceI RCATGY 1 cut(s) 586
XmiI GTMKAC 2 cut(s) 355, 402
XmnI GAANNNNTTC 1 cut(s) 740
Zsp2I ATGCAT 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.