Rh3BG335800
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000445
Physical Location & Seq
Forward (+)
35651314 .. 35651931
618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG335800.1

Sequence Viewer

Length: 618 bp
ATGCATCACCAACGCGGGTTCATGCACCGGGATCTGAAGCCGGAGAATCTTTTGGTGAACAAGGGCGTCATCAAGATTTCGGATCTGGGTACTGCTATAGAGATCGACTGCGGCGACCAAGTCCATCATCATTACGTCACCACAAGGTGGTACAGAGCCCTGTTTCGAGCCTTCGTGAAAAACGAGGGGCTTCGACCTTTTGAGTACGATGAGAAAGTAGACATGTGGGCGATGGGGACAATAATAGCAAAGCTGTTTCTCATGCGGCCTCTCTTCGAGGGTGACGATTCGCCAGATCAGCTGTACAAGATATGCAAAGTCATAGGGGCTCCAACTAGGGATTCACGGACGATGCCTAAACTTGGGCCGGAGAATGGTGTGGGTCTTCGAGCATTGATGCCAAATGCCAGTGAATCGGCCATCGATCTCATAGAGTCTCTTTGTTCTTGGGACCCTTCGAAAAGGCCTAGTGCTAAGGAAGCTCTCCAGCATCCCTTCTTCAAGAGAGGGCAGAATGTTGACGCTCCTCCTGGGTTCTCATATTGCACTCATACAAGGAACAGTGTGGTTCCAAAGATGAGAGAGTTATCAACCATGCAGCCAATACTGGGGGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

205

Amino Acids

23.28

Weight (kDa)

8.66

Isoelectric Point (pI)

50.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 3 - 167 1.1e-32 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 3 - 87 1.4e-07 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000445)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19110 AT4G19110 AT4G19110 AT5G45430 AT5G45430
fragaria_vesca FvH4_2g16890 FvH4_5g19220 FvH4_5g19340 FvH4_5g19350 FvH4_5g19360 FvH4_5g23910 FvH4_7g27810
malus_domestica MD00G1001400.v1.1 MD04G1058900.v1.1 MD04G1059300.v1.1 MD04G1059500.v1.1 MD04G1059600.v1.1 MD04G1059800.v1.1 MD04G1061700.v1.1 MD04G1061800.v1.1 MD06G1014800.v1.1 MD06G1052900.v1.1 MD06G1055500.v1.1
prunus_persica Prupe.5G021300_v2.0.a1 Prupe.5G065900_v2.0.a1 Prupe.5G066500_v2.0.a1
pyrus_communis pycom06g04440
rosa_chinensis RchiOBHm_Chr1g0374681 RchiOBHm_Chr2g0120471 RchiOBHm_Chr2g0120711 RchiOBHm_Chr7g0203821 RchiOBHm_Chr7g0203861 RchiOBHm_Chr7g0208401 RchiOBHm_Chr7g0209011 RchiOBHm_Chr7g0213341
rosa_laevigata RLG00000001348 RLG00000002813 RLG00000003173 RLG00000003212 RLG00000003503 RLG00000022835 RLG00000026723 RLG00000035532
rosa_multiflora Rmu_co7960007.1_g000001 Rmu_co7963796.1_g000001 Rmu_co8519951.1_g000002 Rmu_sc0002038.1_g000009 Rmu_sc0004947.1_g000015 Rmu_sc0007490.1_g000005 Rmu_sc0011180.1_g000003 Rmu_sc0015273.1_g000013 Rmu_ssc0000190.1_g000014 Rmu_ssc0000372.1_g000031
rosa_roxburghii Rroxscaffold_3G00246080 Rroxscaffold_3G00249860 Rroxscaffold_3G00249870 Rroxscaffold_3G00253500 Rroxscaffold_4G00283340
rosa_rugosa Rorug01G0384300 Rorug07G0079000 Rorug07G0079000 Rorug07G0079000 Rorug07G0108300 Rorug07G0141200
rosa_samantha Rh1AG395700 Rh1BG359900 Rh1DG006600 Rh1DG390900 Rh2AG287100 Rh3BG335800 Rh3CG321100 Rh5DG116800 Rh7AG273000 Rh7BG207600 Rh7BG207800 Rh7BG237700 Rh7BG268400 Rh7CG221100 Rh7CG221300 Rh7CG254000 Rh7CG257900 Rh7CG292200 Rh7DG215700 Rh7DG215900 Rh7DG244500 Rh7DG249800 Rh7DG280700
rosa_wichuraiana Rw0G010370 Rw1G035090 Rw2G023020 Rw7G018200 Rw7G020570 Rw7G023690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 147
AccI GTMKAC 1 cut(s) 219
AccII CGCG 1 cut(s) 15
AciI CCGC 3 cut(s) 15, 111, 265
AclWI GGATC 2 cut(s) 39, 90
AcoI YGGCCR 1 cut(s) 417
AcuI CTGAAG 1 cut(s) 56
AcyI GRCGYC 1 cut(s) 66
AdeI CACNNNGTG 1 cut(s) 147
AfaI GTAC 4 cut(s) 91, 152, 206, 305
AfiI CCNNNNNNNGG 4 cut(s) 147, 362, 374, 608
AflIII ACRYGT 1 cut(s) 222
AgsI TTSAA 1 cut(s) 502
AjnI CCWGG 1 cut(s) 529
AjuI GAANNNNNNNTTGG 2 cut(s) 325, 357
AluBI AGCT 3 cut(s) 253, 301, 482
AluI AGCT 3 cut(s) 253, 301, 482
Alw26I GTCTC 1 cut(s) 441
AlwI GGATC 2 cut(s) 39, 90
AoxI GGCC 4 cut(s) 266, 365, 417, 464
ApeKI GCWGC 1 cut(s) 598
AspS9I GGNCC 2 cut(s) 365, 451
AsuC2I CCSGG 1 cut(s) 29
AsuHPI GGTGA 3 cut(s) 67, 130, 293
AsuII TTCGAA 1 cut(s) 458
AvaII GGWCC 1 cut(s) 451
BanII GRGCYC 2 cut(s) 160, 331
BbsI GAAGAC 1 cut(s) 377
BbvI GCAGC 1 cut(s) 610
BccI CCATC 3 cut(s) 132, 226, 428
BciT130I CCWGG 1 cut(s) 531
BcnI CCSGG 1 cut(s) 29
BcoDI GTCTC 1 cut(s) 441
BfaI CTAG 2 cut(s) 336, 468
BfmI CTRYAG 1 cut(s) 96
BisI GCNGC 3 cut(s) 112, 266, 599
BlsI GCNGC 3 cut(s) 113, 267, 600
Bme1390I CCNGG 2 cut(s) 29, 531
Bme18I GGWCC 1 cut(s) 451
BmgT120I GGNCC 2 cut(s) 365, 451
BmiI GGNNCC 4 cut(s) 330, 452, 453, 570
BmrFI CCNGG 2 cut(s) 29, 531
BmrI ACTGGG 1 cut(s) 617
BmsI GCATC 4 cut(s) 13, 342, 387, 499
BmuI ACTGGG 1 cut(s) 617
BpiI GAAGAC 1 cut(s) 377
BpmI CTGGAG 1 cut(s) 470
Bpu10I CCTNAGC 1 cut(s) 474
Bpu14I TTCGAA 1 cut(s) 458
BpuMI CCSGG 1 cut(s) 29
Bsa29I ATCGAT 1 cut(s) 423
BsaHI GRCGYC 1 cut(s) 66
BsaJI CCNNGG 1 cut(s) 530
Bsc4I CCNNNNNNNGG 4 cut(s) 147, 362, 374, 608
Bse1I ACTGG 2 cut(s) 408, 612
BseBI CCWGG 1 cut(s) 531
BseCI ATCGAT 1 cut(s) 423
BseDI CCNNGG 1 cut(s) 530
BseGI GGATG 1 cut(s) 490
BseLI CCNNNNNNNGG 4 cut(s) 147, 362, 374, 608
BseNI ACTGG 2 cut(s) 408, 612
BseRI GAGGAG 1 cut(s) 516
BseXI GCAGC 1 cut(s) 610
Bsh1236I CGCG 1 cut(s) 15
BshFI GGCC 4 cut(s) 268, 367, 419, 466
BshVI ATCGAT 1 cut(s) 423
BsiSI CCGG 3 cut(s) 28, 41, 368
BslFI GGGAC 2 cut(s) 250, 464
BslI CCNNNNNNNGG 4 cut(s) 147, 362, 374, 608
BsmAI GTCTC 1 cut(s) 441
BsmFI GGGAC 2 cut(s) 250, 464
BsnI GGCC 4 cut(s) 268, 367, 419, 466
Bsp119I TTCGAA 1 cut(s) 458
Bsp1286I GDGCHC 2 cut(s) 160, 331
Bsp1407I TGTACA 1 cut(s) 303
Bsp143I GATC 5 cut(s) 31, 82, 102, 295, 424
BspACI CCGC 3 cut(s) 15, 111, 265
BspANI GGCC 4 cut(s) 268, 367, 419, 466
BspDI ATCGAT 1 cut(s) 423
BspFNI CGCG 1 cut(s) 15
BspLI GGNNCC 4 cut(s) 330, 452, 453, 570
BspPI GGATC 2 cut(s) 39, 90
BspT104I TTCGAA 1 cut(s) 458
BsrGI TGTACA 1 cut(s) 303
BsrI ACTGG 2 cut(s) 408, 612
BssECI CCNNGG 1 cut(s) 530
BssMI GATC 5 cut(s) 31, 82, 102, 295, 424
BssNI GRCGYC 1 cut(s) 66
Bst2UI CCWGG 1 cut(s) 531
Bst4CI ACNGT 1 cut(s) 563
Bst6I CTCTTC 1 cut(s) 278
BstACI GRCGYC 1 cut(s) 66
BstAUI TGTACA 1 cut(s) 303
BstBI TTCGAA 1 cut(s) 458
BstDEI CTNAG 1 cut(s) 474
BstF5I GGATG 1 cut(s) 490
BstFNI CGCG 1 cut(s) 15
BstKTI GATC 5 cut(s) 34, 85, 105, 298, 427
BstMAI GTCTC 1 cut(s) 441
BstMBI GATC 5 cut(s) 31, 82, 102, 295, 424
BstMWI GCNNNNNNNGC 2 cut(s) 298, 479
BstNI CCWGG 1 cut(s) 531
BstNSI RCATGY 1 cut(s) 226
BstSCI CCNGG 2 cut(s) 27, 529
BstSFI CTRYAG 1 cut(s) 96
BstUI CGCG 1 cut(s) 15
BstV1I GCAGC 1 cut(s) 610
BstV2I GAAGAC 1 cut(s) 377
BstX2I RGATCY 2 cut(s) 31, 82
BstYI RGATCY 2 cut(s) 31, 82
Bsu15I ATCGAT 1 cut(s) 423
BsuRI GGCC 4 cut(s) 268, 367, 419, 466
BsuTUI ATCGAT 1 cut(s) 423
BtgZI GCGATG 1 cut(s) 245
BtsCI GGATG 1 cut(s) 490
BtsIMutI CAGTG 2 cut(s) 415, 568
Cfr13I GGNCC 2 cut(s) 365, 451
ClaI ATCGAT 1 cut(s) 423
CseI GACGC 2 cut(s) 55, 530
Csp6I GTAC 4 cut(s) 90, 151, 205, 304
CviAII CATG 4 cut(s) 22, 223, 262, 595
CviQI GTAC 4 cut(s) 90, 151, 205, 304
DdeI CTNAG 1 cut(s) 474
DpnI GATC 5 cut(s) 33, 84, 104, 297, 426
DpnII GATC 5 cut(s) 31, 82, 102, 295, 424
DraIII CACNNNGTG 1 cut(s) 147
EaeI YGGCCR 1 cut(s) 417
Eam1104I CTCTTC 1 cut(s) 278
EarI CTCTTC 1 cut(s) 278
Eco147I AGGCCT 1 cut(s) 466
Eco24I GRGCYC 2 cut(s) 160, 331
Eco47I GGWCC 1 cut(s) 451
Eco57I CTGAAG 1 cut(s) 56
EcoO109I RGGNCCY 1 cut(s) 451
EcoRII CCWGG 1 cut(s) 529
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 2 cut(s) 160, 331
FaeI CATG 4 cut(s) 25, 226, 265, 598
FaqI GGGAC 2 cut(s) 250, 464
FatI CATG 4 cut(s) 21, 222, 261, 594
FauI CCCGC 1 cut(s) 8
FblI GTMKAC 1 cut(s) 219
Fnu4HI GCNGC 3 cut(s) 112, 266, 599
FokI GGATG 1 cut(s) 477
FriOI GRGCYC 2 cut(s) 160, 331
Fsp4HI GCNGC 3 cut(s) 112, 266, 599
FspBI CTAG 2 cut(s) 336, 468
GluI GCNGC 3 cut(s) 112, 266, 599
GsuI CTGGAG 1 cut(s) 470
HaeIII GGCC 4 cut(s) 268, 367, 419, 466
HapII CCGG 3 cut(s) 28, 41, 368
HgaI GACGC 2 cut(s) 55, 530
Hin1I GRCGYC 1 cut(s) 66
Hin1II CATG 4 cut(s) 25, 226, 265, 598
HincII GTYRAC 1 cut(s) 520
HindII GTYRAC 1 cut(s) 520
HinfI GANTC 5 cut(s) 46, 287, 341, 413, 434
HpaII CCGG 3 cut(s) 28, 41, 368
HphI GGTGA 3 cut(s) 67, 130, 293
Hpy166II GTNNAC 3 cut(s) 58, 220, 520
Hpy188I TCNGA 2 cut(s) 36, 82
Hpy188III TCNNGA 3 cut(s) 73, 175, 502
Hpy8I GTNNAC 3 cut(s) 58, 220, 520
HpyAV CCTTC 3 cut(s) 181, 465, 505
HpyCH4III ACNGT 1 cut(s) 563
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 5 cut(s) 4, 25, 315, 546, 598
HpyF10VI GCNNNNNNNGC 2 cut(s) 298, 479
HpyF3I CTNAG 1 cut(s) 474
HpySE526I ACGT 1 cut(s) 135
Hsp92I GRCGYC 1 cut(s) 66
Hsp92II CATG 4 cut(s) 25, 226, 265, 598
KflI GGGWCCC 1 cut(s) 451
Kzo9I GATC 5 cut(s) 31, 82, 102, 295, 424
LmnI GCTCC 2 cut(s) 334, 529
Lsp1109I GCAGC 1 cut(s) 610
LweI GCATC 4 cut(s) 13, 342, 387, 499
MaeI CTAG 2 cut(s) 336, 468
MaeII ACGT 1 cut(s) 135
MaeIII GTNAC 2 cut(s) 136, 281
MalI GATC 5 cut(s) 33, 84, 104, 297, 426
MboI GATC 5 cut(s) 31, 82, 102, 295, 424
MboII GAAGA 3 cut(s) 265, 377, 490
MflI RGATCY 2 cut(s) 31, 82
MhlI GDGCHC 2 cut(s) 160, 331
MlyI GAGTC 1 cut(s) 443
MmeI TCCRAC 1 cut(s) 356
MnlI CCTC 5 cut(s) 178, 271, 279, 500, 537
Mph1103I ATGCAT 1 cut(s) 6
MspA1I CMGCKG 1 cut(s) 301
MspI CCGG 3 cut(s) 28, 41, 368
MspR9I CCNGG 2 cut(s) 29, 531
MvaI CCWGG 1 cut(s) 531
MvnI CGCG 1 cut(s) 15
MwoI GCNNNNNNNGC 2 cut(s) 298, 479
NciI CCSGG 1 cut(s) 29
NdeII GATC 5 cut(s) 31, 82, 102, 295, 424
NlaIII CATG 4 cut(s) 25, 226, 265, 598
NlaIV GGNNCC 4 cut(s) 330, 452, 453, 570
NmuCI GTSAC 2 cut(s) 136, 281
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 226
NspV TTCGAA 1 cut(s) 458
PceI AGGCCT 1 cut(s) 466
PciI ACATGT 1 cut(s) 222
PcsI WCGNNNNNNNCGW 3 cut(s) 111, 180, 282
PfeI GAWTC 4 cut(s) 46, 287, 341, 413
PflFI GACNNNGTC 1 cut(s) 119
PflMI CCANNNNNTGG 1 cut(s) 147
PkrI GCNGC 3 cut(s) 113, 267, 600
PleI GAGTC 1 cut(s) 442
PpsI GAGTC 1 cut(s) 442
PpuMI RGGWCCY 1 cut(s) 451
PscI ACATGT 1 cut(s) 222
Psp5II RGGWCCY 1 cut(s) 451
Psp6I CCWGG 1 cut(s) 529
PspGI CCWGG 1 cut(s) 529
PspN4I GGNNCC 4 cut(s) 330, 452, 453, 570
PspPI GGNCC 2 cut(s) 365, 451
PspPPI RGGWCCY 1 cut(s) 451
PsuI RGATCY 2 cut(s) 31, 82
PsyI GACNNNGTC 1 cut(s) 119
PvuII CAGCTG 1 cut(s) 301
RsaI GTAC 4 cut(s) 91, 152, 206, 305
RsaNI GTAC 4 cut(s) 90, 151, 205, 304
SatI GCNGC 3 cut(s) 112, 266, 599
Sau3AI GATC 5 cut(s) 31, 82, 102, 295, 424
Sau96I GGNCC 2 cut(s) 365, 451
SchI GAGTC 1 cut(s) 443
ScrFI CCNGG 2 cut(s) 29, 531
SduI GDGCHC 2 cut(s) 160, 331
SetI ASST 6 cut(s) 138, 149, 199, 255, 303, 484
SfaNI GCATC 4 cut(s) 13, 342, 387, 499
SfcI CTRYAG 1 cut(s) 96
SfuI TTCGAA 1 cut(s) 458
SinI GGWCC 1 cut(s) 451
SseBI AGGCCT 1 cut(s) 466
SsiI CCGC 3 cut(s) 15, 111, 265
SspMI CTAG 2 cut(s) 336, 468
StuI AGGCCT 1 cut(s) 466
StyD4I CCNGG 2 cut(s) 27, 529
TaaI ACNGT 1 cut(s) 563
TaiI ACGT 1 cut(s) 138
TaqI TCGA 7 cut(s) 105, 166, 193, 276, 388, 423, 458
TatI WGTACW 1 cut(s) 303
TauI GCSGC 2 cut(s) 114, 268
TfiI GAWTC 4 cut(s) 46, 287, 341, 413
TscAI CASTG 2 cut(s) 415, 568
TseFI GTSAC 2 cut(s) 136, 281
TseI GCWGC 1 cut(s) 598
Tsp45I GTSAC 2 cut(s) 136, 281
TspDTI ATGAA 1 cut(s) 10
TspGWI ACGGA 1 cut(s) 361
TspRI CASTG 2 cut(s) 415, 568
Tth111I GACNNNGTC 1 cut(s) 119
Van91I CCANNNNNTGG 1 cut(s) 147
VpaK11BI GGWCC 1 cut(s) 451
XceI RCATGY 1 cut(s) 226
XmiI GTMKAC 1 cut(s) 219
XspI CTAG 2 cut(s) 336, 468
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.