Rh7DG215700
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000445
Physical Location & Seq
Forward (+)
20785603 .. 20787097
1495 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG215700.1

Sequence Viewer

Length: 975 bp
ATGGATAGATACGAGATAGTAAGGCTGGTTGGTGAGGGGAGTTTTGGGTGGGTGTATCAGGCCATCGACAACGACTCCCGTCAGTTTGTGGCGATCAAACATCTGAAGCCAGACGGCGATCCGTGGGCATATGTACCGGAAGTCCGTGCTCTCACTAGGTTGGAGCACCCCAATATAGTGAGCTTCAAGGGTGTTGAATACCAAGACGACGACGTCTTCTTTATTTTTGAGTACATGGAGGGTAGCCTTTGTGATCTTATTGATGAGAGGCGGAGCAGGAGAATCCCTTTCTCGGAGGCCGAAATCCGATCATTGAGCCGTCAGGTGTTGCAAGGCCTTGAATTCATGCATCACCAACGCGGGTTCATGCACCGGGATCTGAAGCCGGAGAATCTTTTGGTGAACAAGGGCGACATCAAGATTTCGGATCTGGGTACTGCTACGGAGATCGACTGCGGCGGCCAAGCCCATCATCATTACGTCACCACAAGGTGGTACAGAGCCCCGGAGATGCTGTTTCGGGCCTTTGTGAAAAACGAGAGCCTTCGACCTTTTGAGTACGATGAGAAGGTAGACCTGTGGGCGATGGGGACGATCATCGCCGAGCTATTTCTCATGCACCCTCTCTTCGAGGGTGACGATTCGCCGGACCAGCTCTACAGGATATGTGAAGTCATCGGCGCTCCAAGTAGGGATTCACGGACGATGCCTAAACTTGGGCCGGAGAATGGTGTGGGTCTTCGAGCATTGATGCCATATGCCAGTGAATCGGCCATCGATCTCATAGAGTCTCTTTGTTCTTGGGACCCTTCGAAAAGGCCTAGTGCTAAGGAAGCTCTCCAGCATCCCTTCTTCAAGAGAGGGCAGAATGTTGACGCTCCTCCCGGGTTCTCATATTGCACTCATACAAGGAACAGTGTGGTTCCGAAGATGAGAGAGCTATCAACCATGCAGCCAATACTGGGAGCCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

324

Amino Acids

37.25

Weight (kDa)

5.6

Isoelectric Point (pI)

54.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 4 - 285 1.1e-64 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 6 - 205 1.8e-27 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000445)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19110 AT4G19110 AT4G19110 AT5G45430 AT5G45430
fragaria_vesca FvH4_2g16890 FvH4_5g19220 FvH4_5g19340 FvH4_5g19350 FvH4_5g19360 FvH4_5g23910 FvH4_7g27810
malus_domestica MD00G1001400.v1.1 MD04G1058900.v1.1 MD04G1059300.v1.1 MD04G1059500.v1.1 MD04G1059600.v1.1 MD04G1059800.v1.1 MD04G1061700.v1.1 MD04G1061800.v1.1 MD06G1014800.v1.1 MD06G1052900.v1.1 MD06G1055500.v1.1
prunus_persica Prupe.5G021300_v2.0.a1 Prupe.5G065900_v2.0.a1 Prupe.5G066500_v2.0.a1
pyrus_communis pycom06g04440
rosa_chinensis RchiOBHm_Chr1g0374681 RchiOBHm_Chr2g0120471 RchiOBHm_Chr2g0120711 RchiOBHm_Chr7g0203821 RchiOBHm_Chr7g0203861 RchiOBHm_Chr7g0208401 RchiOBHm_Chr7g0209011 RchiOBHm_Chr7g0213341
rosa_laevigata RLG00000001348 RLG00000002813 RLG00000003173 RLG00000003212 RLG00000003503 RLG00000022835 RLG00000026723 RLG00000035532
rosa_multiflora Rmu_co7960007.1_g000001 Rmu_co7963796.1_g000001 Rmu_co8519951.1_g000002 Rmu_sc0002038.1_g000009 Rmu_sc0004947.1_g000015 Rmu_sc0007490.1_g000005 Rmu_sc0011180.1_g000003 Rmu_sc0015273.1_g000013 Rmu_ssc0000190.1_g000014 Rmu_ssc0000372.1_g000031
rosa_roxburghii Rroxscaffold_3G00246080 Rroxscaffold_3G00249860 Rroxscaffold_3G00249870 Rroxscaffold_3G00253500 Rroxscaffold_4G00283340
rosa_rugosa Rorug01G0384300 Rorug07G0079000 Rorug07G0079000 Rorug07G0079000 Rorug07G0108300 Rorug07G0141200
rosa_samantha Rh1AG395700 Rh1BG359900 Rh1DG006600 Rh1DG390900 Rh2AG287100 Rh3BG335800 Rh3CG321100 Rh5DG116800 Rh7AG273000 Rh7BG207600 Rh7BG207800 Rh7BG237700 Rh7BG268400 Rh7CG221100 Rh7CG221300 Rh7CG254000 Rh7CG257900 Rh7CG292200 Rh7DG215700 Rh7DG215900 Rh7DG244500 Rh7DG249800 Rh7DG280700
rosa_wichuraiana Rw0G010370 Rw1G035090 Rw2G023020 Rw7G018200 Rw7G020570 Rw7G023690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 212
AatII GACGTC 1 cut(s) 216
AccB7I CCANNNNNTGG 1 cut(s) 492
AccI GTMKAC 1 cut(s) 573
AccII CGCG 1 cut(s) 360
AciI CCGC 4 cut(s) 271, 360, 456, 459
AclWI GGATC 3 cut(s) 113, 384, 435
AcoI YGGCCR 2 cut(s) 460, 771
AcsI RAATTY 1 cut(s) 341
AcuI CTGAAG 2 cut(s) 125, 401
AcyI GRCGYC 1 cut(s) 213
AdeI CACNNNGTG 1 cut(s) 492
AfaI GTAC 5 cut(s) 135, 233, 436, 497, 560
AfiI CCNNNNNNNGG 5 cut(s) 292, 492, 716, 728, 962
AgsI TTSAA 4 cut(s) 187, 197, 341, 856
AjuI GAANNNNNNNTTGG 2 cut(s) 679, 711
AluBI AGCT 5 cut(s) 183, 607, 655, 836, 940
AluI AGCT 5 cut(s) 183, 607, 655, 836, 940
Alw21I GWGCWC 2 cut(s) 151, 168
Alw26I GTCTC 1 cut(s) 795
AlwI GGATC 3 cut(s) 113, 384, 435
Ama87I CYCGRG 1 cut(s) 884
AoxI GGCC 8 cut(s) 60, 297, 334, 460, 522, 719, 771, 818
ApeKI GCWGC 1 cut(s) 952
ApoI RAATTY 1 cut(s) 341
AspLEI GCGC 1 cut(s) 683
AspS9I GGNCC 4 cut(s) 522, 649, 719, 805
AsuC2I CCSGG 4 cut(s) 374, 506, 885, 886
AsuHPI GGTGA 5 cut(s) 44, 344, 412, 475, 647
AsuII TTCGAA 1 cut(s) 812
AvaI CYCGRG 1 cut(s) 884
AvaII GGWCC 2 cut(s) 649, 805
BanII GRGCYC 1 cut(s) 505
BbsI GAAGAC 2 cut(s) 208, 731
Bbv12I GWGCWC 2 cut(s) 151, 168
BbvI GCAGC 1 cut(s) 964
BccI CCATC 4 cut(s) 71, 477, 580, 782
BceAI ACGGC 2 cut(s) 130, 303
BcnI CCSGG 4 cut(s) 374, 506, 885, 886
BcoDI GTCTC 1 cut(s) 795
BfaI CTAG 2 cut(s) 156, 822
BfmI CTRYAG 1 cut(s) 658
BfoI RGCGCY 1 cut(s) 684
BisI GCNGC 3 cut(s) 457, 460, 953
BlsI GCNGC 3 cut(s) 458, 461, 954
Bme1390I CCNGG 4 cut(s) 374, 506, 885, 886
Bme18I GGWCC 2 cut(s) 649, 805
BmeT110I CYCGRG 1 cut(s) 884
BmgT120I GGNCC 4 cut(s) 522, 649, 719, 805
BmiI GGNNCC 4 cut(s) 806, 807, 924, 967
BmrFI CCNGG 4 cut(s) 374, 506, 885, 886
BmrI ACTGGG 1 cut(s) 971
BmsI GCATC 5 cut(s) 358, 501, 696, 741, 853
BmuI ACTGGG 1 cut(s) 971
BoxI GACNNNNGTC 1 cut(s) 78
BpiI GAAGAC 2 cut(s) 208, 731
BpmI CTGGAG 1 cut(s) 824
Bpu10I CCTNAGC 1 cut(s) 828
Bpu14I TTCGAA 1 cut(s) 812
BpuMI CCSGG 4 cut(s) 374, 506, 885, 886
Bsa29I ATCGAT 1 cut(s) 777
BsaHI GRCGYC 1 cut(s) 213
BsaJI CCNNGG 3 cut(s) 122, 504, 884
BsaWI WCCGGW 1 cut(s) 136
BsaXI ACNNNNNCTCC 4 cut(s) 59, 89, 500, 530
Bsc4I CCNNNNNNNGG 5 cut(s) 292, 492, 716, 728, 962
Bse1I ACTGG 2 cut(s) 762, 966
BseCI ATCGAT 1 cut(s) 777
BseDI CCNNGG 3 cut(s) 122, 504, 884
BseGI GGATG 1 cut(s) 844
BseLI CCNNNNNNNGG 5 cut(s) 292, 492, 716, 728, 962
BseNI ACTGG 2 cut(s) 762, 966
BseRI GAGGAG 1 cut(s) 870
BseXI GCAGC 1 cut(s) 964
Bsh1236I CGCG 1 cut(s) 360
BshFI GGCC 8 cut(s) 62, 299, 336, 462, 524, 721, 773, 820
BshVI ATCGAT 1 cut(s) 777
BsiHKAI GWGCWC 2 cut(s) 151, 168
BsiHKCI CYCGRG 1 cut(s) 884
BsiSI CCGG 7 cut(s) 137, 373, 386, 506, 647, 722, 885
BslFI GGGAC 2 cut(s) 604, 818
BslI CCNNNNNNNGG 5 cut(s) 292, 492, 716, 728, 962
BsmAI GTCTC 1 cut(s) 795
BsmFI GGGAC 2 cut(s) 604, 818
BsnI GGCC 8 cut(s) 62, 299, 336, 462, 524, 721, 773, 820
BsoBI CYCGRG 1 cut(s) 884
Bsp119I TTCGAA 1 cut(s) 812
Bsp1286I GDGCHC 3 cut(s) 151, 168, 505
Bsp143I GATC 9 cut(s) 93, 118, 253, 308, 376, 427, 447, 594, 778
BspACI CCGC 4 cut(s) 271, 360, 456, 459
BspANI GGCC 8 cut(s) 62, 299, 336, 462, 524, 721, 773, 820
BspDI ATCGAT 1 cut(s) 777
BspFNI CGCG 1 cut(s) 360
BspLI GGNNCC 4 cut(s) 806, 807, 924, 967
BspPI GGATC 3 cut(s) 113, 384, 435
BspT104I TTCGAA 1 cut(s) 812
BsrI ACTGG 2 cut(s) 762, 966
BssECI CCNNGG 3 cut(s) 122, 504, 884
BssMI GATC 9 cut(s) 93, 118, 253, 308, 376, 427, 447, 594, 778
BssNI GRCGYC 1 cut(s) 213
Bst4CI ACNGT 1 cut(s) 917
Bst6I CTCTTC 1 cut(s) 632
BstACI GRCGYC 1 cut(s) 213
BstBI TTCGAA 1 cut(s) 812
BstDEI CTNAG 1 cut(s) 828
BstDSI CCRYGG 1 cut(s) 122
BstF5I GGATG 1 cut(s) 844
BstFNI CGCG 1 cut(s) 360
BstH2I RGCGCY 1 cut(s) 684
BstHHI GCGC 1 cut(s) 683
BstKTI GATC 9 cut(s) 96, 121, 256, 311, 379, 430, 450, 597, 781
BstMAI GTCTC 1 cut(s) 795
BstMBI GATC 9 cut(s) 93, 118, 253, 308, 376, 427, 447, 594, 778
BstMWI GCNNNNNNNGC 2 cut(s) 652, 833
BstPAI GACNNNNGTC 1 cut(s) 78
BstSCI CCNGG 4 cut(s) 372, 504, 883, 884
BstSFI CTRYAG 1 cut(s) 658
BstUI CGCG 1 cut(s) 360
BstV1I GCAGC 1 cut(s) 964
BstV2I GAAGAC 2 cut(s) 208, 731
BstX2I RGATCY 2 cut(s) 376, 427
BstYI RGATCY 2 cut(s) 376, 427
Bsu15I ATCGAT 1 cut(s) 777
BsuRI GGCC 8 cut(s) 62, 299, 336, 462, 524, 721, 773, 820
BsuTUI ATCGAT 1 cut(s) 777
BtgI CCRYGG 1 cut(s) 122
BtgZI GCGATG 2 cut(s) 583, 599
BtsCI GGATG 1 cut(s) 844
BtsIMutI CAGTG 2 cut(s) 769, 922
CfoI GCGC 1 cut(s) 683
Cfr13I GGNCC 4 cut(s) 522, 649, 719, 805
Cfr9I CCCGGG 1 cut(s) 884
ClaI ATCGAT 1 cut(s) 777
CseI GACGC 1 cut(s) 884
Csp6I GTAC 5 cut(s) 134, 232, 435, 496, 559
CviAII CATG 5 cut(s) 235, 346, 367, 616, 949
CviQI GTAC 5 cut(s) 134, 232, 435, 496, 559
DdeI CTNAG 1 cut(s) 828
DpnI GATC 9 cut(s) 95, 120, 255, 310, 378, 429, 449, 596, 780
DpnII GATC 9 cut(s) 93, 118, 253, 308, 376, 427, 447, 594, 778
DraIII CACNNNGTG 1 cut(s) 492
DrdI GACNNNNNNGTC 1 cut(s) 212
DseDI GACNNNNNNGTC 1 cut(s) 212
EaeI YGGCCR 2 cut(s) 460, 771
Eam1104I CTCTTC 1 cut(s) 632
EarI CTCTTC 1 cut(s) 632
EciI GGCGGA 1 cut(s) 286
Eco147I AGGCCT 2 cut(s) 336, 820
Eco24I GRGCYC 1 cut(s) 505
Eco47I GGWCC 2 cut(s) 649, 805
Eco57I CTGAAG 2 cut(s) 125, 401
Eco88I CYCGRG 1 cut(s) 884
EcoO109I RGGNCCY 1 cut(s) 805
EcoRI GAATTC 1 cut(s) 341
EcoT22I ATGCAT 1 cut(s) 351
EcoT38I GRGCYC 1 cut(s) 505
FaeI CATG 5 cut(s) 238, 349, 370, 619, 952
FaqI GGGAC 2 cut(s) 604, 818
FatI CATG 5 cut(s) 234, 345, 366, 615, 948
FauI CCCGC 1 cut(s) 353
FauNDI CATATG 2 cut(s) 130, 757
FblI GTMKAC 1 cut(s) 573
Fnu4HI GCNGC 3 cut(s) 457, 460, 953
FokI GGATG 1 cut(s) 831
FriOI GRGCYC 1 cut(s) 505
Fsp4HI GCNGC 3 cut(s) 457, 460, 953
FspBI CTAG 2 cut(s) 156, 822
GlaI GCGC 1 cut(s) 682
GluI GCNGC 3 cut(s) 457, 460, 953
GsuI CTGGAG 1 cut(s) 824
HaeII RGCGCY 1 cut(s) 684
HaeIII GGCC 8 cut(s) 62, 299, 336, 462, 524, 721, 773, 820
HapII CCGG 7 cut(s) 137, 373, 386, 506, 647, 722, 885
HgaI GACGC 1 cut(s) 884
HhaI GCGC 1 cut(s) 683
Hin1I GRCGYC 1 cut(s) 213
Hin1II CATG 5 cut(s) 238, 349, 370, 619, 952
Hin6I GCGC 1 cut(s) 681
HinP1I GCGC 1 cut(s) 681
HincII GTYRAC 1 cut(s) 874
HindII GTYRAC 1 cut(s) 874
HinfI GANTC 7 cut(s) 74, 282, 391, 641, 695, 767, 788
HpaII CCGG 7 cut(s) 137, 373, 386, 506, 647, 722, 885
HphI GGTGA 5 cut(s) 44, 344, 412, 475, 647
Hpy166II GTNNAC 3 cut(s) 403, 574, 874
Hpy188I TCNGA 6 cut(s) 105, 295, 308, 381, 427, 927
Hpy188III TCNNGA 2 cut(s) 418, 856
Hpy8I GTNNAC 3 cut(s) 403, 574, 874
Hpy99I CGWCG 2 cut(s) 212, 215
HpyAV CCTTC 4 cut(s) 554, 562, 819, 859
HpyCH4III ACNGT 1 cut(s) 917
HpyCH4IV ACGT 2 cut(s) 213, 480
HpyCH4V TGCA 6 cut(s) 331, 349, 370, 619, 900, 952
HpyF10VI GCNNNNNNNGC 2 cut(s) 652, 833
HpyF3I CTNAG 1 cut(s) 828
HpySE526I ACGT 2 cut(s) 213, 480
Hsp92I GRCGYC 1 cut(s) 213
Hsp92II CATG 5 cut(s) 238, 349, 370, 619, 952
HspAI GCGC 1 cut(s) 681
KflI GGGWCCC 1 cut(s) 805
Kzo9I GATC 9 cut(s) 93, 118, 253, 308, 376, 427, 447, 594, 778
LmnI GCTCC 5 cut(s) 163, 273, 688, 883, 965
Lsp1109I GCAGC 1 cut(s) 964
LweI GCATC 5 cut(s) 358, 501, 696, 741, 853
MaeI CTAG 2 cut(s) 156, 822
MaeII ACGT 2 cut(s) 213, 480
MaeIII GTNAC 2 cut(s) 481, 635
MalI GATC 9 cut(s) 95, 120, 255, 310, 378, 429, 449, 596, 780
MboI GATC 9 cut(s) 93, 118, 253, 308, 376, 427, 447, 594, 778
MboII GAAGA 5 cut(s) 208, 619, 731, 844, 940
MflI RGATCY 2 cut(s) 376, 427
MhlI GDGCHC 3 cut(s) 151, 168, 505
MluCI AATT 1 cut(s) 341
MlyI GAGTC 2 cut(s) 68, 797
MmeI TCCRAC 1 cut(s) 141
MnlI CCTC 8 cut(s) 28, 232, 261, 289, 625, 633, 854, 891
Mph1103I ATGCAT 1 cut(s) 351
MspI CCGG 7 cut(s) 137, 373, 386, 506, 647, 722, 885
MspR9I CCNGG 4 cut(s) 374, 506, 885, 886
MvnI CGCG 1 cut(s) 360
MwoI GCNNNNNNNGC 2 cut(s) 652, 833
NciI CCSGG 4 cut(s) 374, 506, 885, 886
NdeI CATATG 2 cut(s) 130, 757
NdeII GATC 9 cut(s) 93, 118, 253, 308, 376, 427, 447, 594, 778
NlaIII CATG 5 cut(s) 238, 349, 370, 619, 952
NlaIV GGNNCC 4 cut(s) 806, 807, 924, 967
NmeAIII GCCGAG 1 cut(s) 628
NmuCI GTSAC 2 cut(s) 481, 635
NsiI ATGCAT 1 cut(s) 351
NspV TTCGAA 1 cut(s) 812
PceI AGGCCT 2 cut(s) 336, 820
PcsI WCGNNNNNNNCGW 1 cut(s) 636
PfeI GAWTC 5 cut(s) 282, 391, 641, 695, 767
PflFI GACNNNGTC 1 cut(s) 212
PflMI CCANNNNNTGG 1 cut(s) 492
PkrI GCNGC 3 cut(s) 458, 461, 954
PleI GAGTC 2 cut(s) 68, 796
PpsI GAGTC 2 cut(s) 68, 796
PpuMI RGGWCCY 1 cut(s) 805
PshAI GACNNNNGTC 1 cut(s) 78
Psp5II RGGWCCY 1 cut(s) 805
PspN4I GGNNCC 4 cut(s) 806, 807, 924, 967
PspPI GGNCC 4 cut(s) 522, 649, 719, 805
PspPPI RGGWCCY 1 cut(s) 805
PsuI RGATCY 2 cut(s) 376, 427
PsyI GACNNNGTC 1 cut(s) 212
RsaI GTAC 5 cut(s) 135, 233, 436, 497, 560
RsaNI GTAC 5 cut(s) 134, 232, 435, 496, 559
SatI GCNGC 3 cut(s) 457, 460, 953
Sau3AI GATC 9 cut(s) 93, 118, 253, 308, 376, 427, 447, 594, 778
Sau96I GGNCC 4 cut(s) 522, 649, 719, 805
SchI GAGTC 2 cut(s) 68, 797
ScrFI CCNGG 4 cut(s) 374, 506, 885, 886
SduI GDGCHC 3 cut(s) 151, 168, 505
SfaNI GCATC 5 cut(s) 358, 501, 696, 741, 853
SfcI CTRYAG 1 cut(s) 658
SfuI TTCGAA 1 cut(s) 812
SinI GGWCC 2 cut(s) 649, 805
SmaI CCCGGG 1 cut(s) 886
Sse9I AATT 1 cut(s) 341
SseBI AGGCCT 2 cut(s) 336, 820
SsiI CCGC 4 cut(s) 271, 360, 456, 459
SspMI CTAG 2 cut(s) 156, 822
StuI AGGCCT 2 cut(s) 336, 820
StyD4I CCNGG 4 cut(s) 372, 504, 883, 884
TaaI ACNGT 1 cut(s) 917
TaiI ACGT 2 cut(s) 216, 483
TaqI TCGA 7 cut(s) 66, 450, 547, 630, 742, 777, 812
TasI AATT 1 cut(s) 341
TatI WGTACW 1 cut(s) 231
TauI GCSGC 2 cut(s) 459, 462
TfiI GAWTC 5 cut(s) 282, 391, 641, 695, 767
TscAI CASTG 2 cut(s) 769, 922
TseFI GTSAC 2 cut(s) 481, 635
TseI GCWGC 1 cut(s) 952
Tsp45I GTSAC 2 cut(s) 481, 635
TspDTI ATGAA 2 cut(s) 334, 355
TspGWI ACGGA 4 cut(s) 111, 134, 458, 715
TspMI CCCGGG 1 cut(s) 884
TspRI CASTG 2 cut(s) 769, 922
Tth111I GACNNNGTC 1 cut(s) 212
Van91I CCANNNNNTGG 1 cut(s) 492
VpaK11BI GGWCC 2 cut(s) 649, 805
XapI RAATTY 1 cut(s) 341
XmaI CCCGGG 1 cut(s) 884
XmiI GTMKAC 1 cut(s) 573
XspI CTAG 2 cut(s) 156, 822
ZraI GACGTC 1 cut(s) 214
Zsp2I ATGCAT 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.