MD04G1058900.v1.1
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Forward (+)
7686957 .. 7687895
939 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1058900.v1.1.491

Sequence Viewer

Length: 939 bp
ATGGAAAAGTTCGAGATGATTAAGAAACTCGGGAGTGGTGCTTTCGGGGCTGTCTTTGCTGCACGGCACAAACAGACGAACGAAGTTGTTGCAATCAAGAAACTGAACCAAAGGTGCAGTTCGTTGCAGCAGTGTCTTAGCCTACCAGAAGTTCAGTCCCTTTCCAAACTCAACCATCCCAACATTGTCCGGTTGAAGAGTGTAGTCGCCGAATATGAGTCTGCTTTCTTTGTGTTTGAGTACATGCACAGCAGTCTGCTTGATCTTATTGAGAAAAAAAGGCAAACCGGATTCACAGAGGACGAAATTAGAAACATCTGCTATCAGATGTTTCAGGGCTTGGCCTACATGCACAAAACTGGCTATTTCCATCGCGATATGAAACCAGAGAATGTCTTGGTTAAGGAGGGTGCCGTCAAGATTGGGGATTTGGGTTCTACTAAGGAGATTAATTCGCCTCCTCCCTATACAGACTACATCGGCACTATTTGGTATCGAGCTCCCGAGGTGTTGCTTCGGTCAGACCGCTATTGTCCTAAGGTCGATATGTGGGCAATGGGTGCTATCATGGCAGAGCTGTTCTCACTCCAGCCTCTATTTCCTGGTCGAAGTGATGCTGATCAGATATTCAAGATTTGCAGCGTGATTGGTAGGCCAACTTTGGGGTCTTGGCGCAATGGGTTTCTTCTTGCACACAAGATGAACTATCAGTTTCCACAAATTGACGGGCTTGGTCTGTCTGCGATGATTCCTTCCGCAAGTGAATCAGCTATCAAGCTGATTTCTTCCCTTTGTTCTTGGGACCCATCTGCGAGGCCTACTGCTGCTGATGCACTCAAGCATCCTTTCTTCATTGGCAGCCACAGGATTCCACGCGCCATCCCTTTGAGACAAAGCAATATTCTGCCTGCGTCGAATTCTTCTCTTATTTTCGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

313

Amino Acids

35.07

Weight (kDa)

9.13

Isoelectric Point (pI)

48.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 4 - 284 9e-71 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 5 - 196 5.5e-36 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000445)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19110 AT4G19110 AT4G19110 AT5G45430 AT5G45430
fragaria_vesca FvH4_2g16890 FvH4_5g19220 FvH4_5g19340 FvH4_5g19350 FvH4_5g19360 FvH4_5g23910 FvH4_7g27810
malus_domestica MD00G1001400.v1.1 MD04G1058900.v1.1 MD04G1059300.v1.1 MD04G1059500.v1.1 MD04G1059600.v1.1 MD04G1059800.v1.1 MD04G1061700.v1.1 MD04G1061800.v1.1 MD06G1014800.v1.1 MD06G1052900.v1.1 MD06G1055500.v1.1
prunus_persica Prupe.5G021300_v2.0.a1 Prupe.5G065900_v2.0.a1 Prupe.5G066500_v2.0.a1
pyrus_communis pycom06g04440
rosa_chinensis RchiOBHm_Chr1g0374681 RchiOBHm_Chr2g0120471 RchiOBHm_Chr2g0120711 RchiOBHm_Chr7g0203821 RchiOBHm_Chr7g0203861 RchiOBHm_Chr7g0208401 RchiOBHm_Chr7g0209011 RchiOBHm_Chr7g0213341
rosa_laevigata RLG00000001348 RLG00000002813 RLG00000003173 RLG00000003212 RLG00000003503 RLG00000022835 RLG00000026723 RLG00000035532
rosa_multiflora Rmu_co7960007.1_g000001 Rmu_co7963796.1_g000001 Rmu_co8519951.1_g000002 Rmu_sc0002038.1_g000009 Rmu_sc0004947.1_g000015 Rmu_sc0007490.1_g000005 Rmu_sc0011180.1_g000003 Rmu_sc0015273.1_g000013 Rmu_ssc0000190.1_g000014 Rmu_ssc0000372.1_g000031
rosa_roxburghii Rroxscaffold_3G00246080 Rroxscaffold_3G00249860 Rroxscaffold_3G00249870 Rroxscaffold_3G00253500 Rroxscaffold_4G00283340
rosa_rugosa Rorug01G0384300 Rorug07G0079000 Rorug07G0079000 Rorug07G0079000 Rorug07G0108300 Rorug07G0141200
rosa_samantha Rh1AG395700 Rh1BG359900 Rh1DG006600 Rh1DG390900 Rh2AG287100 Rh3BG335800 Rh3CG321100 Rh5DG116800 Rh7AG273000 Rh7BG207600 Rh7BG207800 Rh7BG237700 Rh7BG268400 Rh7CG221100 Rh7CG221300 Rh7CG254000 Rh7CG257900 Rh7CG292200 Rh7DG215700 Rh7DG215900 Rh7DG244500 Rh7DG249800 Rh7DG280700
rosa_wichuraiana Rw0G010370 Rw1G035090 Rw2G023020 Rw7G018200 Rw7G020570 Rw7G023690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 410
AccII CGCG 2 cut(s) 375, 876
AciI CCGC 2 cut(s) 526, 756
AcsI RAATTY 1 cut(s) 916
AfaI GTAC 1 cut(s) 242
AfiI CCNNNNNNNGG 1 cut(s) 662
AgsI TTSAA 2 cut(s) 196, 631
AjnI CCWGG 1 cut(s) 601
AluBI AGCT 4 cut(s) 500, 577, 770, 778
AluI AGCT 4 cut(s) 500, 577, 770, 778
Alw21I GWGCWC 1 cut(s) 502
Alw26I GTCTC 1 cut(s) 883
Ama87I CYCGRG 2 cut(s) 29, 503
AoxI GGCC 3 cut(s) 342, 653, 815
ApeKI GCWGC 5 cut(s) 59, 127, 639, 824, 858
ApoI RAATTY 1 cut(s) 916
AseI ATTAAT 1 cut(s) 450
AspLEI GCGC 2 cut(s) 675, 878
AspS9I GGNCC 1 cut(s) 802
AvaI CYCGRG 2 cut(s) 29, 503
AvaII GGWCC 1 cut(s) 802
AxyI CCTNAGG 1 cut(s) 537
BanI GGYRCC 1 cut(s) 410
BanII GRGCYC 1 cut(s) 502
Bbv12I GWGCWC 1 cut(s) 502
BbvI GCAGC 5 cut(s) 46, 139, 651, 811, 870
BccI CCATC 4 cut(s) 183, 378, 814, 887
BceAI ACGGC 2 cut(s) 80, 398
BcgI CGANNNNNNTGC 2 cut(s) 71, 105
BciT130I CCWGG 1 cut(s) 603
BclI TGATCA 1 cut(s) 619
BcoDI GTCTC 1 cut(s) 883
BisI GCNGC 5 cut(s) 60, 128, 640, 825, 859
BlsI GCNGC 5 cut(s) 61, 129, 641, 826, 860
Bme1390I CCNGG 1 cut(s) 603
Bme18I GGWCC 1 cut(s) 802
BmeT110I CYCGRG 2 cut(s) 29, 503
BmgT120I GGNCC 1 cut(s) 802
BmiI GGNNCC 3 cut(s) 412, 803, 804
BmrFI CCNGG 1 cut(s) 603
BmsI GCATC 3 cut(s) 604, 820, 850
BplI GAGNNNNNCTC 2 cut(s) 566, 598
BpmI CTGGAG 1 cut(s) 572
BpuEI CTTGAG 1 cut(s) 821
BsaBI GATNNNNATC 1 cut(s) 618
BsaJI CCNNGG 1 cut(s) 504
BsaWI WCCGGW 2 cut(s) 189, 287
Bsc4I CCNNNNNNNGG 1 cut(s) 662
Bse1I ACTGG 1 cut(s) 364
Bse21I CCTNAGG 1 cut(s) 537
Bse3DI GCAATG 2 cut(s) 561, 682
Bse8I GATNNNNATC 1 cut(s) 618
BseBI CCWGG 1 cut(s) 603
BseDI CCNNGG 1 cut(s) 504
BseGI GGATG 3 cut(s) 175, 841, 879
BseJI GATNNNNATC 1 cut(s) 618
BseLI CCNNNNNNNGG 1 cut(s) 662
BseMI GCAATG 2 cut(s) 561, 682
BseNI ACTGG 1 cut(s) 364
BseRI GAGGAG 1 cut(s) 450
BseXI GCAGC 5 cut(s) 46, 139, 651, 811, 870
BsgI GTGCAG 2 cut(s) 45, 136
Bsh1236I CGCG 2 cut(s) 375, 876
BshFI GGCC 3 cut(s) 344, 655, 817
BshNI GGYRCC 1 cut(s) 410
BsiHKAI GWGCWC 1 cut(s) 502
BsiHKCI CYCGRG 2 cut(s) 29, 503
BsiSI CCGG 2 cut(s) 190, 288
BslFI GGGAC 2 cut(s) 142, 815
BslI CCNNNNNNNGG 1 cut(s) 662
BsmAI GTCTC 1 cut(s) 883
BsmFI GGGAC 2 cut(s) 142, 815
BsnI GGCC 3 cut(s) 344, 655, 817
BsoBI CYCGRG 2 cut(s) 29, 503
Bsp1286I GDGCHC 1 cut(s) 502
Bsp143I GATC 2 cut(s) 262, 619
Bsp68I TCGCGA 1 cut(s) 375
BspACI CCGC 2 cut(s) 526, 756
BspANI GGCC 3 cut(s) 344, 655, 817
BspFNI CGCG 2 cut(s) 375, 876
BspLI GGNNCC 3 cut(s) 412, 803, 804
BspT107I GGYRCC 1 cut(s) 410
BsrDI GCAATG 2 cut(s) 561, 682
BsrI ACTGG 1 cut(s) 364
BssECI CCNNGG 1 cut(s) 504
BssMI GATC 2 cut(s) 262, 619
Bst2UI CCWGG 1 cut(s) 603
Bst6I CTCTTC 1 cut(s) 191
BstAPI GCANNNNNTGC 1 cut(s) 560
BstC8I GCNNGC 1 cut(s) 909
BstDEI CTNAG 3 cut(s) 137, 441, 537
BstF5I GGATG 3 cut(s) 175, 841, 879
BstFNI CGCG 2 cut(s) 375, 876
BstHHI GCGC 2 cut(s) 675, 878
BstKTI GATC 2 cut(s) 265, 622
BstMAI GTCTC 1 cut(s) 883
BstMBI GATC 2 cut(s) 262, 619
BstMWI GCNNNNNNNGC 5 cut(s) 47, 56, 560, 569, 830
BstNI CCWGG 1 cut(s) 603
BstNSI RCATGY 2 cut(s) 247, 352
BstSCI CCNGG 1 cut(s) 601
BstUI CGCG 2 cut(s) 375, 876
BstV1I GCAGC 5 cut(s) 46, 139, 651, 811, 870
Bsu36I CCTNAGG 1 cut(s) 537
BsuRI GGCC 3 cut(s) 344, 655, 817
BtgZI GCGATG 2 cut(s) 356, 758
BtsCI GGATG 3 cut(s) 175, 841, 879
BtsI GCAGTG 1 cut(s) 137
BtsIMutI CAGTG 1 cut(s) 137
BtuMI TCGCGA 1 cut(s) 375
Cac8I GCNNGC 1 cut(s) 909
CfoI GCGC 2 cut(s) 675, 878
Cfr13I GGNCC 1 cut(s) 802
CseI GACGC 1 cut(s) 900
Csp6I GTAC 1 cut(s) 241
CviAII CATG 3 cut(s) 244, 349, 568
CviQI GTAC 1 cut(s) 241
DdeI CTNAG 3 cut(s) 137, 441, 537
DpnI GATC 2 cut(s) 264, 621
DpnII GATC 2 cut(s) 262, 619
Eam1104I CTCTTC 1 cut(s) 191
EarI CTCTTC 1 cut(s) 191
Ecl136II GAGCTC 1 cut(s) 500
Eco147I AGGCCT 1 cut(s) 817
Eco24I GRGCYC 1 cut(s) 502
Eco47I GGWCC 1 cut(s) 802
Eco53kI GAGCTC 1 cut(s) 500
Eco81I CCTNAGG 1 cut(s) 537
Eco88I CYCGRG 2 cut(s) 29, 503
EcoICRI GAGCTC 1 cut(s) 500
EcoO109I RGGNCCY 1 cut(s) 802
EcoRI GAATTC 1 cut(s) 916
EcoRII CCWGG 1 cut(s) 601
EcoT38I GRGCYC 1 cut(s) 502
FaeI CATG 3 cut(s) 247, 352, 571
FaiI YATR 7 cut(s) 216, 245, 350, 380, 468, 548, 569
FaqI GGGAC 2 cut(s) 142, 815
FatI CATG 3 cut(s) 243, 348, 567
FbaI TGATCA 1 cut(s) 619
Fnu4HI GCNGC 5 cut(s) 60, 128, 640, 825, 859
FokI GGATG 3 cut(s) 162, 828, 866
FriOI GRGCYC 1 cut(s) 502
Fsp4HI GCNGC 5 cut(s) 60, 128, 640, 825, 859
GlaI GCGC 2 cut(s) 674, 877
GluI GCNGC 5 cut(s) 60, 128, 640, 825, 859
GsuI CTGGAG 1 cut(s) 572
HaeIII GGCC 3 cut(s) 344, 655, 817
HapII CCGG 2 cut(s) 190, 288
HgaI GACGC 1 cut(s) 900
HhaI GCGC 2 cut(s) 675, 878
Hin1II CATG 3 cut(s) 247, 352, 571
Hin6I GCGC 2 cut(s) 673, 876
HinP1I GCGC 2 cut(s) 673, 876
HinfI GANTC 5 cut(s) 218, 291, 748, 764, 868
HpaII CCGG 2 cut(s) 190, 288
Hpy188I TCNGA 3 cut(s) 327, 523, 624
Hpy188III TCNNGA 7 cut(s) 13, 31, 97, 374, 418, 503, 631
Hpy99I CGWCG 1 cut(s) 916
HpyAV CCTTC 1 cut(s) 762
HpyCH4V TGCA 9 cut(s) 62, 92, 117, 127, 247, 352, 639, 692, 833
HpyF10VI GCNNNNNNNGC 5 cut(s) 47, 56, 560, 569, 830
HpyF3I CTNAG 3 cut(s) 137, 441, 537
Hsp92II CATG 3 cut(s) 247, 352, 571
HspAI GCGC 2 cut(s) 673, 876
KflI GGGWCCC 1 cut(s) 802
Ksp22I TGATCA 1 cut(s) 619
Kzo9I GATC 2 cut(s) 262, 619
LmnI GCTCC 1 cut(s) 505
Lsp1109I GCAGC 5 cut(s) 46, 139, 651, 811, 870
LweI GCATC 3 cut(s) 604, 820, 850
MalI GATC 2 cut(s) 264, 621
MboI GATC 2 cut(s) 262, 619
MboII GAAGA 5 cut(s) 208, 677, 777, 841, 912
MhlI GDGCHC 1 cut(s) 502
MluCI AATT 4 cut(s) 306, 451, 720, 916
MlyI GAGTC 1 cut(s) 227
MnlI CCTC 7 cut(s) 292, 400, 468, 471, 499, 603, 807
MseI TTAA 3 cut(s) 21, 402, 450
MspI CCGG 2 cut(s) 190, 288
MspR9I CCNGG 1 cut(s) 603
MvaI CCWGG 1 cut(s) 603
MvnI CGCG 2 cut(s) 375, 876
MwoI GCNNNNNNNGC 5 cut(s) 47, 56, 560, 569, 830
NdeII GATC 2 cut(s) 262, 619
NlaIII CATG 3 cut(s) 247, 352, 571
NlaIV GGNNCC 3 cut(s) 412, 803, 804
NruI TCGCGA 1 cut(s) 375
NspI RCATGY 2 cut(s) 247, 352
PceI AGGCCT 1 cut(s) 817
PfeI GAWTC 4 cut(s) 291, 748, 764, 868
PkrI GCNGC 5 cut(s) 61, 129, 641, 826, 860
PleI GAGTC 1 cut(s) 226
PpsI GAGTC 1 cut(s) 226
PpuMI RGGWCCY 1 cut(s) 802
PshBI ATTAAT 1 cut(s) 450
Psp124BI GAGCTC 1 cut(s) 502
Psp5II RGGWCCY 1 cut(s) 802
Psp6I CCWGG 1 cut(s) 601
PspGI CCWGG 1 cut(s) 601
PspN4I GGNNCC 3 cut(s) 412, 803, 804
PspPI GGNCC 1 cut(s) 802
PspPPI RGGWCCY 1 cut(s) 802
RruI TCGCGA 1 cut(s) 375
RsaI GTAC 1 cut(s) 242
RsaNI GTAC 1 cut(s) 241
SacI GAGCTC 1 cut(s) 502
SaqAI TTAA 3 cut(s) 21, 402, 450
SatI GCNGC 5 cut(s) 60, 128, 640, 825, 859
Sau3AI GATC 2 cut(s) 262, 619
Sau96I GGNCC 1 cut(s) 802
SchI GAGTC 1 cut(s) 227
ScrFI CCNGG 1 cut(s) 603
SduI GDGCHC 1 cut(s) 502
SetI ASST 7 cut(s) 116, 502, 510, 543, 579, 772, 780
SfaNI GCATC 3 cut(s) 604, 820, 850
SinI GGWCC 1 cut(s) 802
SmlI CTYRAG 1 cut(s) 836
SmoI CTYRAG 1 cut(s) 836
Sse9I AATT 4 cut(s) 306, 451, 720, 916
SseBI AGGCCT 1 cut(s) 817
SsiI CCGC 2 cut(s) 526, 756
SspI AATATT 1 cut(s) 901
SstI GAGCTC 1 cut(s) 502
StuI AGGCCT 1 cut(s) 817
StyD4I CCNGG 1 cut(s) 601
TaqI TCGA 5 cut(s) 12, 496, 543, 607, 914
TaqII GACCGA 1 cut(s) 507
TasI AATT 4 cut(s) 306, 451, 720, 916
TatI WGTACW 1 cut(s) 240
TfiI GAWTC 4 cut(s) 291, 748, 764, 868
Tru1I TTAA 3 cut(s) 21, 402, 450
Tru9I TTAA 3 cut(s) 21, 402, 450
TscAI CASTG 1 cut(s) 137
TseI GCWGC 5 cut(s) 59, 127, 639, 824, 858
TspDTI ATGAA 3 cut(s) 395, 716, 841
TspRI CASTG 1 cut(s) 137
VpaK11BI GGWCC 1 cut(s) 802
VspI ATTAAT 1 cut(s) 450
XapI RAATTY 1 cut(s) 916
XceI RCATGY 2 cut(s) 247, 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.