FvH4_5g19350
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000445
Physical Location & Seq
Forward (+)
11209774 .. 11211317
1544 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g19350.t1

Sequence Viewer

Length: 987 bp
ATGGAGAGATACCATATCATCAAGCAAGTTGGTGAAGGTAGTTTCGGGCGGGTGTATCAGGCGATCGACCACCTCACTGGTCAATATGTGGCGATCAAACAGTTGAAGCCAAACTGTCATCCCATGTCGTATCTGCCGGAAGTCCGTGCTCTCCAGATTTTGCAGCACCCCAAGATAGTGGGATTCAAGGGAGCTGAACGCCAACACAACACCGTTTTCTTGGTTTTCGAGTACATGGACGGCAGCCTTCGACATCTCATCAACCATAGGCTGAGGATGGGAGTCCCTTTCTCGGAAGCCGAGATCAAATTTTTTAGCTTCCAAGTCTTGCAGGGACTCGACTTCATGCATCGAAACCGCCGCTTCATGCACAGGGACCTGAAGCCGGAGAATCTCTTGGTCAACAAGCATGGCGTCCTCAAGATCTCGGATCTTGGTAGTGCTACGGAGATAGAATCCGATGAAAGCCTATTCCACCATCATTATGTCACCACAAGGAGTTATCGTGCCCCGGAGATGCTGCTTCGGATGTTCTTGAAAAACAAGAAGCTTCGACCGTTCGAGTACGATGAGAAAGTGGACATGTGGGCGGTTGGGGTAATCATAGCTGAGCTGTATCTCATGCGGCCTCTCTTCATCGCTGAGAGTTCTGCCGATCAGTTGAAAGAGATATGCAAAGTGATAGGGGCACCAACTTGGGAGTCATGGATGAACTGGCCTAAACTTGAGCCGGAGAAGGGTTTCGGGTTTCGAGCTTTAGTGACGTCTGCCAGTGAATCGGCTCTCGATCTCATTGAGTCTCTGTGTTCTTGGGACCCATCGAATAGGCCAAGTGCCGCGGAAGCTCTTCGGCATCCATTCTTCACGAGAGGCCGGAATGTTTTGGCTCCTCCTCCTGGGTTCTCACGTTGCCCTCGTCCAATGATGAGGTACGTGGTCAACAAGAATGTTCCAAAGATGACTAGCATGCAGCAGCCAATTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

329

Amino Acids

38.08

Weight (kDa)

9.33

Isoelectric Point (pI)

49.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 4 - 288 5.1e-66 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 5 - 207 9.6e-29 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000445)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19110 AT4G19110 AT4G19110 AT5G45430 AT5G45430
fragaria_vesca FvH4_2g16890 FvH4_5g19220 FvH4_5g19340 FvH4_5g19350 FvH4_5g19360 FvH4_5g23910 FvH4_7g27810
malus_domestica MD00G1001400.v1.1 MD04G1058900.v1.1 MD04G1059300.v1.1 MD04G1059500.v1.1 MD04G1059600.v1.1 MD04G1059800.v1.1 MD04G1061700.v1.1 MD04G1061800.v1.1 MD06G1014800.v1.1 MD06G1052900.v1.1 MD06G1055500.v1.1
prunus_persica Prupe.5G021300_v2.0.a1 Prupe.5G065900_v2.0.a1 Prupe.5G066500_v2.0.a1
pyrus_communis pycom06g04440
rosa_chinensis RchiOBHm_Chr1g0374681 RchiOBHm_Chr2g0120471 RchiOBHm_Chr2g0120711 RchiOBHm_Chr7g0203821 RchiOBHm_Chr7g0203861 RchiOBHm_Chr7g0208401 RchiOBHm_Chr7g0209011 RchiOBHm_Chr7g0213341
rosa_laevigata RLG00000001348 RLG00000002813 RLG00000003173 RLG00000003212 RLG00000003503 RLG00000022835 RLG00000026723 RLG00000035532
rosa_multiflora Rmu_co7960007.1_g000001 Rmu_co7963796.1_g000001 Rmu_co8519951.1_g000002 Rmu_sc0002038.1_g000009 Rmu_sc0004947.1_g000015 Rmu_sc0007490.1_g000005 Rmu_sc0011180.1_g000003 Rmu_sc0015273.1_g000013 Rmu_ssc0000190.1_g000014 Rmu_ssc0000372.1_g000031
rosa_roxburghii Rroxscaffold_3G00246080 Rroxscaffold_3G00249860 Rroxscaffold_3G00249870 Rroxscaffold_3G00253500 Rroxscaffold_4G00283340
rosa_rugosa Rorug01G0384300 Rorug07G0079000 Rorug07G0079000 Rorug07G0079000 Rorug07G0108300 Rorug07G0141200
rosa_samantha Rh1AG395700 Rh1BG359900 Rh1DG006600 Rh1DG390900 Rh2AG287100 Rh3BG335800 Rh3CG321100 Rh5DG116800 Rh7AG273000 Rh7BG207600 Rh7BG207800 Rh7BG237700 Rh7BG268400 Rh7CG221100 Rh7CG221300 Rh7CG254000 Rh7CG257900 Rh7CG292200 Rh7DG215700 Rh7DG215900 Rh7DG244500 Rh7DG249800 Rh7DG280700
rosa_wichuraiana Rw0G010370 Rw1G035090 Rw2G023020 Rw7G018200 Rw7G020570 Rw7G023690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 767
AccB1I GGYRCC 1 cut(s) 688
AccII CGCG 1 cut(s) 839
AciI CCGC 7 cut(s) 49, 358, 361, 590, 625, 837, 839
AclWI GGATC 1 cut(s) 438
AcsI RAATTY 1 cut(s) 308
AcuI CTGAAG 1 cut(s) 401
AcyI GRCGYC 2 cut(s) 414, 764
AfaI GTAC 3 cut(s) 233, 566, 932
AfiI CCNNNNNNNGG 4 cut(s) 292, 385, 737, 896
AflIII ACRYGT 1 cut(s) 582
AgsI TTSAA 4 cut(s) 106, 187, 538, 664
AjnI CCWGG 1 cut(s) 895
AluBI AGCT 7 cut(s) 194, 318, 550, 608, 613, 755, 845
AluI AGCT 7 cut(s) 194, 318, 550, 608, 613, 755, 845
Alw21I GWGCWC 1 cut(s) 151
Alw26I GTCTC 1 cut(s) 804
AlwI GGATC 1 cut(s) 438
AoxI GGCC 4 cut(s) 626, 716, 827, 871
ApeKI GCWGC 5 cut(s) 163, 243, 520, 970, 973
ApoI RAATTY 1 cut(s) 308
Asp700I GAANNNNTTC 2 cut(s) 740, 846
AspS9I GGNCC 2 cut(s) 376, 814
AsuC2I CCSGG 1 cut(s) 512
AsuHPI GGTGA 2 cut(s) 44, 481
AvaII GGWCC 2 cut(s) 376, 814
BaeGI GKGCMC 2 cut(s) 511, 691
BanI GGYRCC 1 cut(s) 688
BauI CACGAG 1 cut(s) 865
Bbv12I GWGCWC 1 cut(s) 151
BbvCI CCTCAGC 1 cut(s) 272
BbvI GCAGC 4 cut(s) 175, 255, 507, 982
BccI CCATC 3 cut(s) 271, 486, 826
BceAI ACGGC 1 cut(s) 256
BciT130I CCWGG 1 cut(s) 897
BcnI CCSGG 1 cut(s) 512
BcoDI GTCTC 1 cut(s) 804
BfaI CTAG 2 cut(s) 963, 985
BglII AGATCT 1 cut(s) 423
BisI GCNGC 8 cut(s) 164, 244, 361, 521, 626, 837, 971, 974
BlpI GCTNAGC 1 cut(s) 609
BlsI GCNGC 8 cut(s) 165, 245, 362, 522, 627, 838, 972, 975
Bme1390I CCNGG 2 cut(s) 512, 897
Bme18I GGWCC 2 cut(s) 376, 814
BmgT120I GGNCC 2 cut(s) 376, 814
BmiI GGNNCC 5 cut(s) 377, 690, 815, 816, 888
BmrFI CCNGG 2 cut(s) 512, 897
BmsI GCATC 3 cut(s) 358, 507, 862
BpmI CTGGAG 1 cut(s) 137
Bpu10I CCTNAGC 1 cut(s) 272
Bpu1102I GCTNAGC 1 cut(s) 609
BpuEI CTTGAG 2 cut(s) 404, 746
BpuMI CCSGG 1 cut(s) 512
BsaAI YACGTR 1 cut(s) 934
BsaHI GRCGYC 2 cut(s) 414, 764
BsaJI CCNNGG 3 cut(s) 510, 837, 896
BsaXI ACNNNNNCTCC 2 cut(s) 490, 520
Bsc4I CCNNNNNNNGG 4 cut(s) 292, 385, 737, 896
Bse1I ACTGG 3 cut(s) 82, 719, 771
BseBI CCWGG 1 cut(s) 897
BseDI CCNNGG 3 cut(s) 510, 837, 896
BseGI GGATG 5 cut(s) 118, 282, 534, 714, 853
BseLI CCNNNNNNNGG 4 cut(s) 292, 385, 737, 896
BseMII CTCAG 3 cut(s) 263, 600, 633
BseNI ACTGG 3 cut(s) 82, 719, 771
BseRI GAGGAG 2 cut(s) 879, 882
BseSI GKGCMC 2 cut(s) 511, 691
BseXI GCAGC 4 cut(s) 175, 255, 507, 982
Bsh1236I CGCG 1 cut(s) 839
Bsh1285I CGRYCG 2 cut(s) 66, 557
BshFI GGCC 4 cut(s) 628, 718, 829, 873
BshNI GGYRCC 1 cut(s) 688
BsiEI CGRYCG 2 cut(s) 66, 557
BsiHKAI GWGCWC 1 cut(s) 151
BsiSI CCGG 5 cut(s) 137, 386, 512, 731, 874
BslFI GGGAC 4 cut(s) 269, 348, 389, 827
BslI CCNNNNNNNGG 4 cut(s) 292, 385, 737, 896
BsmAI GTCTC 1 cut(s) 804
BsmFI GGGAC 4 cut(s) 269, 348, 389, 827
BsnI GGCC 4 cut(s) 628, 718, 829, 873
Bsp1286I GDGCHC 3 cut(s) 151, 511, 691
Bsp143I GATC 7 cut(s) 63, 93, 303, 423, 430, 655, 787
Bsp1720I GCTNAGC 1 cut(s) 609
BspACI CCGC 7 cut(s) 49, 358, 361, 590, 625, 837, 839
BspANI GGCC 4 cut(s) 628, 718, 829, 873
BspCNI CTCAG 3 cut(s) 264, 601, 634
BspFNI CGCG 1 cut(s) 839
BspLI GGNNCC 5 cut(s) 377, 690, 815, 816, 888
BspPI GGATC 1 cut(s) 438
BspQI GCTCTTC 1 cut(s) 852
BspT107I GGYRCC 1 cut(s) 688
BsrI ACTGG 3 cut(s) 82, 719, 771
BssECI CCNNGG 3 cut(s) 510, 837, 896
BssMI GATC 7 cut(s) 63, 93, 303, 423, 430, 655, 787
BssNI GRCGYC 2 cut(s) 414, 764
BssSI CACGAG 1 cut(s) 865
Bst2BI CACGAG 1 cut(s) 865
Bst2UI CCWGG 1 cut(s) 897
Bst4CI ACNGT 4 cut(s) 102, 116, 214, 558
Bst6I CTCTTC 2 cut(s) 638, 852
BstACI GRCGYC 2 cut(s) 414, 764
BstBAI YACGTR 1 cut(s) 934
BstC8I GCNNGC 1 cut(s) 968
BstDEI CTNAG 3 cut(s) 272, 609, 642
BstDSI CCRYGG 1 cut(s) 837
BstF5I GGATG 5 cut(s) 118, 282, 534, 714, 853
BstFNI CGCG 1 cut(s) 839
BstKTI GATC 7 cut(s) 66, 96, 306, 426, 433, 658, 790
BstMAI GTCTC 1 cut(s) 804
BstMBI GATC 7 cut(s) 63, 93, 303, 423, 430, 655, 787
BstMCI CGRYCG 2 cut(s) 66, 557
BstMWI GCNNNNNNNGC 1 cut(s) 842
BstNI CCWGG 1 cut(s) 897
BstNSI RCATGY 2 cut(s) 586, 970
BstSCI CCNGG 2 cut(s) 510, 895
BstSLI GKGCMC 2 cut(s) 511, 691
BstUI CGCG 1 cut(s) 839
BstV1I GCAGC 4 cut(s) 175, 255, 507, 982
BstX2I RGATCY 2 cut(s) 423, 430
BstXI CCANNNNNNTGG 2 cut(s) 77, 178
BstYI RGATCY 2 cut(s) 423, 430
BsuRI GGCC 4 cut(s) 628, 718, 829, 873
BtgI CCRYGG 1 cut(s) 837
BtgZI GCGATG 1 cut(s) 622
BtsCI GGATG 5 cut(s) 118, 282, 534, 714, 853
BtsIMutI CAGTG 2 cut(s) 75, 778
Cac8I GCNNGC 1 cut(s) 968
Cfr13I GGNCC 2 cut(s) 376, 814
Cfr42I CCGCGG 1 cut(s) 840
CseI GACGC 1 cut(s) 403
Csp6I GTAC 3 cut(s) 232, 565, 931
CviAII CATG 9 cut(s) 124, 235, 346, 367, 410, 583, 622, 705, 967
CviQI GTAC 3 cut(s) 232, 565, 931
DdeI CTNAG 3 cut(s) 272, 609, 642
DpnI GATC 7 cut(s) 65, 95, 305, 425, 432, 657, 789
DpnII GATC 7 cut(s) 63, 93, 303, 423, 430, 655, 787
Eam1104I CTCTTC 2 cut(s) 638, 852
EarI CTCTTC 2 cut(s) 638, 852
Eco47I GGWCC 2 cut(s) 376, 814
Eco57I CTGAAG 1 cut(s) 401
EcoO109I RGGNCCY 2 cut(s) 376, 814
EcoRII CCWGG 1 cut(s) 895
EcoT22I ATGCAT 1 cut(s) 351
FaeI CATG 9 cut(s) 127, 238, 349, 370, 413, 586, 625, 708, 970
FaqI GGGAC 4 cut(s) 269, 348, 389, 827
FatI CATG 9 cut(s) 123, 234, 345, 366, 409, 582, 621, 704, 966
FauI CCCGC 1 cut(s) 42
Fnu4HI GCNGC 8 cut(s) 164, 244, 361, 521, 626, 837, 971, 974
FokI GGATG 5 cut(s) 105, 289, 541, 721, 840
Fsp4HI GCNGC 8 cut(s) 164, 244, 361, 521, 626, 837, 971, 974
FspBI CTAG 2 cut(s) 963, 985
GluI GCNGC 8 cut(s) 164, 244, 361, 521, 626, 837, 971, 974
GsuI CTGGAG 1 cut(s) 137
HaeIII GGCC 4 cut(s) 628, 718, 829, 873
HapII CCGG 5 cut(s) 137, 386, 512, 731, 874
HgaI GACGC 1 cut(s) 403
Hin1I GRCGYC 2 cut(s) 414, 764
Hin1II CATG 9 cut(s) 127, 238, 349, 370, 413, 586, 625, 708, 970
HincII GTYRAC 2 cut(s) 403, 940
HindII GTYRAC 2 cut(s) 403, 940
HindIII AAGCTT 1 cut(s) 548
HinfI GANTC 8 cut(s) 183, 282, 336, 391, 455, 701, 776, 797
HpaII CCGG 5 cut(s) 137, 386, 512, 731, 874
HphI GGTGA 2 cut(s) 44, 481
Hpy166II GTNNAC 3 cut(s) 403, 580, 940
Hpy188I TCNGA 4 cut(s) 295, 430, 460, 528
Hpy188III TCNNGA 5 cut(s) 154, 421, 535, 785, 865
Hpy8I GTNNAC 3 cut(s) 403, 580, 940
HpyAV CCTTC 3 cut(s) 29, 257, 730
HpyCH4III ACNGT 4 cut(s) 102, 116, 214, 558
HpyCH4IV ACGT 3 cut(s) 764, 907, 933
HpyCH4V TGCA 6 cut(s) 163, 331, 349, 370, 675, 970
HpyF10VI GCNNNNNNNGC 1 cut(s) 842
HpyF3I CTNAG 3 cut(s) 272, 609, 642
HpySE526I ACGT 3 cut(s) 764, 907, 933
Hsp92I GRCGYC 2 cut(s) 414, 764
Hsp92II CATG 9 cut(s) 127, 238, 349, 370, 413, 586, 625, 708, 970
KflI GGGWCCC 1 cut(s) 814
KspI CCGCGG 1 cut(s) 840
Kzo9I GATC 7 cut(s) 63, 93, 303, 423, 430, 655, 787
LguI GCTCTTC 1 cut(s) 852
LmnI GCTCC 2 cut(s) 191, 892
Lsp1109I GCAGC 4 cut(s) 175, 255, 507, 982
LweI GCATC 3 cut(s) 358, 507, 862
MaeI CTAG 2 cut(s) 963, 985
MaeII ACGT 3 cut(s) 764, 907, 933
MaeIII GTNAC 2 cut(s) 487, 760
MalI GATC 7 cut(s) 65, 95, 305, 425, 432, 657, 789
MboI GATC 7 cut(s) 63, 93, 303, 423, 430, 655, 787
MboII GAAGA 3 cut(s) 625, 839, 853
MflI RGATCY 2 cut(s) 423, 430
MhlI GDGCHC 3 cut(s) 151, 511, 691
MluCI AATT 2 cut(s) 308, 978
MlyI GAGTC 4 cut(s) 291, 330, 710, 806
MnlI CCTC 9 cut(s) 83, 267, 428, 639, 863, 900, 903, 921, 924
Mph1103I ATGCAT 1 cut(s) 351
MroXI GAANNNNTTC 2 cut(s) 740, 846
MslI CAYNNNNRTG 1 cut(s) 483
MspA1I CMGCKG 1 cut(s) 839
MspI CCGG 5 cut(s) 137, 386, 512, 731, 874
MspR9I CCNGG 2 cut(s) 512, 897
MvaI CCWGG 1 cut(s) 897
MvnI CGCG 1 cut(s) 839
MwoI GCNNNNNNNGC 1 cut(s) 842
NciI CCSGG 1 cut(s) 512
NdeII GATC 7 cut(s) 63, 93, 303, 423, 430, 655, 787
NlaIII CATG 9 cut(s) 127, 238, 349, 370, 413, 586, 625, 708, 970
NlaIV GGNNCC 5 cut(s) 377, 690, 815, 816, 888
NmeAIII GCCGAG 1 cut(s) 325
NmuCI GTSAC 2 cut(s) 487, 760
NsiI ATGCAT 1 cut(s) 351
NspI RCATGY 2 cut(s) 586, 970
PaeI GCATGC 1 cut(s) 970
PciI ACATGT 1 cut(s) 582
PciSI GCTCTTC 1 cut(s) 852
PcsI WCGNNNNNNNCGW 1 cut(s) 913
PdmI GAANNNNTTC 2 cut(s) 740, 846
PfeI GAWTC 4 cut(s) 183, 391, 455, 776
PkrI GCNGC 8 cut(s) 165, 245, 362, 522, 627, 838, 972, 975
Ple19I CGATCG 1 cut(s) 66
PleI GAGTC 4 cut(s) 290, 330, 709, 805
PpsI GAGTC 4 cut(s) 290, 330, 709, 805
Ppu21I YACGTR 1 cut(s) 934
PpuMI RGGWCCY 2 cut(s) 376, 814
PscI ACATGT 1 cut(s) 582
Psp5II RGGWCCY 2 cut(s) 376, 814
Psp6I CCWGG 1 cut(s) 895
PspGI CCWGG 1 cut(s) 895
PspN4I GGNNCC 5 cut(s) 377, 690, 815, 816, 888
PspPI GGNCC 2 cut(s) 376, 814
PspPPI RGGWCCY 2 cut(s) 376, 814
PsuI RGATCY 2 cut(s) 423, 430
PvuI CGATCG 1 cut(s) 66
RsaI GTAC 3 cut(s) 233, 566, 932
RsaNI GTAC 3 cut(s) 232, 565, 931
RseI CAYNNNNRTG 1 cut(s) 483
SacII CCGCGG 1 cut(s) 840
SapI GCTCTTC 1 cut(s) 852
SatI GCNGC 8 cut(s) 164, 244, 361, 521, 626, 837, 971, 974
Sau3AI GATC 7 cut(s) 63, 93, 303, 423, 430, 655, 787
Sau96I GGNCC 2 cut(s) 376, 814
SchI GAGTC 4 cut(s) 291, 330, 710, 806
ScrFI CCNGG 2 cut(s) 512, 897
SduI GDGCHC 3 cut(s) 151, 511, 691
SfaNI GCATC 3 cut(s) 358, 507, 862
Sfr303I CCGCGG 1 cut(s) 840
SgrBI CCGCGG 1 cut(s) 840
SinI GGWCC 2 cut(s) 376, 814
SmiMI CAYNNNNRTG 1 cut(s) 483
SmlI CTYRAG 2 cut(s) 419, 725
SmoI CTYRAG 2 cut(s) 419, 725
SphI GCATGC 1 cut(s) 970
Sse9I AATT 2 cut(s) 308, 978
SsiI CCGC 7 cut(s) 49, 358, 361, 590, 625, 837, 839
SspMI CTAG 2 cut(s) 963, 985
StyD4I CCNGG 2 cut(s) 510, 895
TaaI ACNGT 4 cut(s) 102, 116, 214, 558
TaiI ACGT 3 cut(s) 767, 910, 936
TasI AATT 2 cut(s) 308, 978
TatI WGTACW 1 cut(s) 231
TauI GCSGC 3 cut(s) 363, 628, 839
TfiI GAWTC 4 cut(s) 183, 391, 455, 776
TscAI CASTG 2 cut(s) 82, 778
TseFI GTSAC 2 cut(s) 487, 760
TseI GCWGC 5 cut(s) 163, 243, 520, 970, 973
Tsp45I GTSAC 2 cut(s) 487, 760
TspDTI ATGAA 5 cut(s) 334, 355, 477, 625, 725
TspGWI ACGGA 2 cut(s) 134, 461
TspRI CASTG 2 cut(s) 82, 778
VpaK11BI GGWCC 2 cut(s) 376, 814
XapI RAATTY 1 cut(s) 308
XceI RCATGY 2 cut(s) 586, 970
XmnI GAANNNNTTC 2 cut(s) 740, 846
XspI CTAG 2 cut(s) 963, 985
ZraI GACGTC 1 cut(s) 765
Zsp2I ATGCAT 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.