Rorug01G0384300
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
49621715 .. 49627220
5506 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0384300.1

Sequence Viewer

Length: 921 bp
ATGAAGGGGAAGAGCCGCTTGTTCACGATCGGGCTCGTGACGTCCTGGTACTCATCCAACATTGGCGTTCTGCTGCTGAACAAGTACTTGCTTAGCAACTATGGCTTCAAGTACCCGATCTTCCTCACCATGTGCCACATGACGGCGTGTTCTCTGCTCAGCTACATCGCAATTGCGTGGATGAAGATGGTGCCGATGCAGACCATTCGATCCCGTGTTCAGTTTCTGAAGATCACGGCGTTGAGTCTCGTGTTCTGTGTTTCTGTGGTGTTTGGGAACATTTCGCTGCGGTATTTGCCGGTGTCGTTTAACCAGGCTATAGGGGCCACCACGCCGTTCTTCACTGCCGTTTTCGCTTACTTTATGACCCTGAAAAGGGAGGCGTGGCTGACTTACCTGACGCTCGTTCCTGTGGTTACAGGGGTCATCATTGCCAGTGGGGGTGAACCAAGTTTCCATCTATTTGGGTTCTTAATTTGTATCGCAGCAACAGCTGCCAGGGCGCTTAAGTCAGTGCTACAAGGGATTTTGCTTTCTTCTGAAGGGGAGAAGCTGAATTCGATGAACCTCCTATTGTATATGGCTCCGATAGCTGTTGTTTTCCTACTCCCTGCAACACTTATCATGGAAGATAATGTCGTTGGGATAACACTAGCTCTTGCAAGAGATGATGTCAAGATTATATGGTATCTGTTATTCAATTCAGCATTGGCATATTTTGTAAATCTGACCAACTTTTTGGTCACGAAACACACCAGTGCTCTGACTCTTCAGGTGCTAGGAAATGCAAAGGGCGCTGTAGCTGTGGTTGTTTCAATCTTGATTTTTAGAAATCCTGTTTCTGTGACTGGAATGATGGGTTATTCCCTTACAGTCTTTGGAGTAATTCTATACAGTGAAGCGAAGAAAAGAAGTAAATGA

Protein Analysis

306

Amino Acids

33.67

Weight (kDa)

9.78

Isoelectric Point (pI)

31.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 12 - 299 1.4e-46 Triose-phosphate Transporter family
UAA PF08449 26 - 301 1.5e-14 UAA transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000445)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19110 AT4G19110 AT4G19110 AT5G45430 AT5G45430
fragaria_vesca FvH4_2g16890 FvH4_5g19220 FvH4_5g19340 FvH4_5g19350 FvH4_5g19360 FvH4_5g23910 FvH4_7g27810
malus_domestica MD00G1001400.v1.1 MD04G1058900.v1.1 MD04G1059300.v1.1 MD04G1059500.v1.1 MD04G1059600.v1.1 MD04G1059800.v1.1 MD04G1061700.v1.1 MD04G1061800.v1.1 MD06G1014800.v1.1 MD06G1052900.v1.1 MD06G1055500.v1.1
prunus_persica Prupe.5G021300_v2.0.a1 Prupe.5G065900_v2.0.a1 Prupe.5G066500_v2.0.a1
pyrus_communis pycom06g04440
rosa_chinensis RchiOBHm_Chr1g0374681 RchiOBHm_Chr2g0120471 RchiOBHm_Chr2g0120711 RchiOBHm_Chr7g0203821 RchiOBHm_Chr7g0203861 RchiOBHm_Chr7g0208401 RchiOBHm_Chr7g0209011 RchiOBHm_Chr7g0213341
rosa_laevigata RLG00000001348 RLG00000002813 RLG00000003173 RLG00000003212 RLG00000003503 RLG00000022835 RLG00000026723 RLG00000035532
rosa_multiflora Rmu_co7960007.1_g000001 Rmu_co7963796.1_g000001 Rmu_co8519951.1_g000002 Rmu_sc0002038.1_g000009 Rmu_sc0004947.1_g000015 Rmu_sc0007490.1_g000005 Rmu_sc0011180.1_g000003 Rmu_sc0015273.1_g000013 Rmu_ssc0000190.1_g000014 Rmu_ssc0000372.1_g000031
rosa_roxburghii Rroxscaffold_3G00246080 Rroxscaffold_3G00249860 Rroxscaffold_3G00249870 Rroxscaffold_3G00253500 Rroxscaffold_4G00283340
rosa_rugosa Rorug01G0384300 Rorug07G0079000 Rorug07G0079000 Rorug07G0079000 Rorug07G0108300 Rorug07G0141200
rosa_samantha Rh1AG395700 Rh1BG359900 Rh1DG006600 Rh1DG390900 Rh2AG287100 Rh3BG335800 Rh3CG321100 Rh5DG116800 Rh7AG273000 Rh7BG207600 Rh7BG207800 Rh7BG237700 Rh7BG268400 Rh7CG221100 Rh7CG221300 Rh7CG254000 Rh7CG257900 Rh7CG292200 Rh7DG215700 Rh7DG215900 Rh7DG244500 Rh7DG249800 Rh7DG280700
rosa_wichuraiana Rw0G010370 Rw1G035090 Rw2G023020 Rw7G018200 Rw7G020570 Rw7G023690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 44
AccB1I GGYRCC 1 cut(s) 190
AciI CCGC 2 cut(s) 16, 289
AclWI GGATC 1 cut(s) 204
AcsI RAATTY 1 cut(s) 556
AcuI CTGAAG 3 cut(s) 248, 561, 755
AcyI GRCGYC 1 cut(s) 41
AdeI CACNNNGTG 1 cut(s) 132
AfaI GTAC 3 cut(s) 50, 86, 113
AfiI CCNNNNNNNGG 3 cut(s) 142, 375, 376
AflII CTTAAG 1 cut(s) 506
AgsI TTSAA 3 cut(s) 109, 700, 816
AjnI CCWGG 3 cut(s) 44, 312, 497
AleI CACNNNNGTG 1 cut(s) 756
AloI GAACNNNNNNTCC 2 cut(s) 438, 470
AluBI AGCT 6 cut(s) 162, 494, 553, 593, 656, 803
AluI AGCT 6 cut(s) 162, 494, 553, 593, 656, 803
Alw21I GWGCWC 1 cut(s) 763
Alw26I GTCTC 1 cut(s) 251
AlwI GGATC 1 cut(s) 204
AlwNI CAGNNNCTG 1 cut(s) 226
AoxI GGCC 1 cut(s) 324
ApeKI GCWGC 4 cut(s) 73, 286, 485, 494
ApoI RAATTY 1 cut(s) 556
ArsI GACNNNNNNTTYG 2 cut(s) 721, 753
AspLEI GCGC 2 cut(s) 505, 797
AspS9I GGNCC 1 cut(s) 324
AsuHPI GGTGA 2 cut(s) 118, 455
BanI GGYRCC 1 cut(s) 190
BanII GRGCYC 1 cut(s) 36
BarI GAAGNNNNNNTAC 2 cut(s) 104, 136
BauI CACGAG 2 cut(s) 35, 248
Bbv12I GWGCWC 1 cut(s) 763
BbvI GCAGC 4 cut(s) 60, 273, 481, 497
BccI CCATC 3 cut(s) 181, 465, 850
BceAI ACGGC 4 cut(s) 159, 252, 319, 332
BcgI CGANNNNNNTGC 2 cut(s) 188, 222
BciT130I CCWGG 3 cut(s) 46, 314, 499
BcoDI GTCTC 1 cut(s) 251
BfaI CTAG 2 cut(s) 653, 779
BfmI CTRYAG 2 cut(s) 318, 798
BfoI RGCGCY 2 cut(s) 506, 798
BfrI CTTAAG 1 cut(s) 506
BisI GCNGC 5 cut(s) 16, 74, 287, 486, 495
BlpI GCTNAGC 2 cut(s) 92, 158
BlsI GCNGC 5 cut(s) 17, 75, 288, 487, 496
BmcAI AGTACT 1 cut(s) 86
Bme1390I CCNGG 3 cut(s) 46, 314, 499
BmgT120I GGNCC 1 cut(s) 324
BmiI GGNNCC 3 cut(s) 192, 325, 585
BmrFI CCNGG 3 cut(s) 46, 314, 499
BmsI GCATC 1 cut(s) 186
Bpu1102I GCTNAGC 2 cut(s) 92, 158
BsaHI GRCGYC 1 cut(s) 41
BsaJI CCNNGG 1 cut(s) 498
Bsc4I CCNNNNNNNGG 3 cut(s) 142, 375, 376
Bse118I RCCGGY 1 cut(s) 298
Bse1I ACTGG 3 cut(s) 435, 756, 853
Bse3DI GCAATG 1 cut(s) 429
BseBI CCWGG 3 cut(s) 46, 314, 499
BseDI CCNNGG 1 cut(s) 498
BseGI GGATG 2 cut(s) 53, 186
BseLI CCNNNNNNNGG 3 cut(s) 142, 375, 376
BseMI GCAATG 1 cut(s) 429
BseMII CTCAG 1 cut(s) 172
BseNI ACTGG 3 cut(s) 435, 756, 853
BseXI GCAGC 4 cut(s) 60, 273, 481, 497
Bsh1285I CGRYCG 1 cut(s) 30
BshFI GGCC 1 cut(s) 326
BshNI GGYRCC 1 cut(s) 190
BsiEI CGRYCG 1 cut(s) 30
BsiHKAI GWGCWC 1 cut(s) 763
BsiSI CCGG 1 cut(s) 299
BslI CCNNNNNNNGG 3 cut(s) 142, 375, 376
BsmAI GTCTC 1 cut(s) 251
BsnI GGCC 1 cut(s) 326
Bsp1286I GDGCHC 2 cut(s) 36, 763
Bsp143I GATC 4 cut(s) 27, 117, 209, 231
Bsp1720I GCTNAGC 2 cut(s) 92, 158
BspACI CCGC 2 cut(s) 16, 289
BspANI GGCC 1 cut(s) 326
BspCNI CTCAG 1 cut(s) 171
BspLI GGNNCC 3 cut(s) 192, 325, 585
BspPI GGATC 1 cut(s) 204
BspQI GCTCTTC 1 cut(s) 5
BspT107I GGYRCC 1 cut(s) 190
BspTI CTTAAG 1 cut(s) 506
BsrDI GCAATG 1 cut(s) 429
BsrFI RCCGGY 1 cut(s) 298
BsrI ACTGG 3 cut(s) 435, 756, 853
BssAI RCCGGY 1 cut(s) 298
BssECI CCNNGG 1 cut(s) 498
BssMI GATC 4 cut(s) 27, 117, 209, 231
BssNI GRCGYC 1 cut(s) 41
BssSI CACGAG 2 cut(s) 35, 248
Bst2BI CACGAG 2 cut(s) 35, 248
Bst2UI CCWGG 3 cut(s) 46, 314, 499
Bst4CI ACNGT 2 cut(s) 874, 896
Bst6I CTCTTC 2 cut(s) 5, 774
BstACI GRCGYC 1 cut(s) 41
BstAFI CTTAAG 1 cut(s) 506
BstAPI GCANNNNNTGC 1 cut(s) 494
BstDEI CTNAG 2 cut(s) 92, 158
BstF5I GGATG 2 cut(s) 53, 186
BstH2I RGCGCY 2 cut(s) 506, 798
BstHHI GCGC 2 cut(s) 505, 797
BstKTI GATC 4 cut(s) 30, 120, 212, 234
BstMAI GTCTC 1 cut(s) 251
BstMBI GATC 4 cut(s) 27, 117, 209, 231
BstMCI CGRYCG 1 cut(s) 30
BstMWI GCNNNNNNNGC 9 cut(s) 102, 295, 323, 353, 491, 494, 500, 590, 794
BstNI CCWGG 3 cut(s) 46, 314, 499
BstSCI CCNGG 3 cut(s) 44, 312, 497
BstSFI CTRYAG 2 cut(s) 318, 798
BstV1I GCAGC 4 cut(s) 60, 273, 481, 497
BstXI CCANNNNNNTGG 2 cut(s) 464, 739
BsuRI GGCC 1 cut(s) 326
BtgZI GCGATG 1 cut(s) 151
BtsCI GGATG 2 cut(s) 53, 186
BtsI GCAGTG 1 cut(s) 342
BtsIMutI CAGTG 5 cut(s) 342, 442, 519, 763, 901
CaiI CAGNNNCTG 1 cut(s) 226
CfoI GCGC 2 cut(s) 505, 797
Cfr10I RCCGGY 1 cut(s) 298
Cfr13I GGNCC 1 cut(s) 324
CseI GACGC 1 cut(s) 409
Csp6I GTAC 3 cut(s) 49, 85, 112
CviAII CATG 3 cut(s) 130, 139, 625
CviQI GTAC 3 cut(s) 49, 85, 112
DdeI CTNAG 2 cut(s) 92, 158
DpnI GATC 4 cut(s) 29, 119, 211, 233
DpnII GATC 4 cut(s) 27, 117, 209, 231
DraIII CACNNNGTG 1 cut(s) 132
Eam1104I CTCTTC 2 cut(s) 5, 774
EarI CTCTTC 2 cut(s) 5, 774
Eco24I GRGCYC 1 cut(s) 36
Eco57I CTGAAG 3 cut(s) 248, 561, 755
EcoRI GAATTC 1 cut(s) 556
EcoRII CCWGG 3 cut(s) 44, 312, 497
EcoT38I GRGCYC 1 cut(s) 36
FaeI CATG 3 cut(s) 133, 142, 628
FalI AAGNNNNNCTT 1 cut(s) 34
FatI CATG 3 cut(s) 129, 138, 624
Fnu4HI GCNGC 5 cut(s) 16, 74, 287, 486, 495
FokI GGATG 2 cut(s) 40, 193
FriOI GRGCYC 1 cut(s) 36
Fsp4HI GCNGC 5 cut(s) 16, 74, 287, 486, 495
FspBI CTAG 2 cut(s) 653, 779
GlaI GCGC 2 cut(s) 504, 796
GluI GCNGC 5 cut(s) 16, 74, 287, 486, 495
HaeII RGCGCY 2 cut(s) 506, 798
HaeIII GGCC 1 cut(s) 326
HapII CCGG 1 cut(s) 299
HgaI GACGC 1 cut(s) 409
HhaI GCGC 2 cut(s) 505, 797
Hin1I GRCGYC 1 cut(s) 41
Hin1II CATG 3 cut(s) 133, 142, 628
Hin6I GCGC 2 cut(s) 503, 795
HinP1I GCGC 2 cut(s) 503, 795
HinfI GANTC 2 cut(s) 244, 766
HpaII CCGG 1 cut(s) 299
HphI GGTGA 2 cut(s) 118, 455
Hpy166II GTNNAC 2 cut(s) 24, 446
Hpy188I TCNGA 5 cut(s) 228, 541, 588, 729, 765
Hpy188III TCNNGA 5 cut(s) 25, 37, 676, 745, 820
Hpy8I GTNNAC 2 cut(s) 24, 446
HpyAV CCTTC 1 cut(s) 536
HpyCH4III ACNGT 2 cut(s) 874, 896
HpyCH4IV ACGT 1 cut(s) 41
HpyCH4V TGCA 4 cut(s) 199, 614, 662, 788
HpyF10VI GCNNNNNNNGC 9 cut(s) 102, 295, 323, 353, 491, 494, 500, 590, 794
HpyF3I CTNAG 2 cut(s) 92, 158
HpySE526I ACGT 1 cut(s) 41
Hsp92I GRCGYC 1 cut(s) 41
Hsp92II CATG 3 cut(s) 133, 142, 628
HspAI GCGC 2 cut(s) 503, 795
Kzo9I GATC 4 cut(s) 27, 117, 209, 231
LguI GCTCTTC 1 cut(s) 5
LmnI GCTCC 1 cut(s) 589
Lsp1109I GCAGC 4 cut(s) 60, 273, 481, 497
LweI GCATC 1 cut(s) 186
MaeI CTAG 2 cut(s) 653, 779
MaeII ACGT 1 cut(s) 41
MaeIII GTNAC 4 cut(s) 37, 415, 742, 844
MalI GATC 4 cut(s) 29, 119, 211, 233
MboI GATC 4 cut(s) 27, 117, 209, 231
MboII GAAGA 9 cut(s) 22, 112, 196, 241, 331, 528, 641, 761, 916
MfeI CAATTG 1 cut(s) 171
MhlI GDGCHC 2 cut(s) 36, 763
MluCI AATT 5 cut(s) 171, 474, 556, 700, 885
MlyI GAGTC 2 cut(s) 253, 760
MmeI TCCRAC 1 cut(s) 81
MnlI CCTC 3 cut(s) 134, 373, 578
MseI TTAA 3 cut(s) 309, 473, 507
MslI CAYNNNNRTG 1 cut(s) 756
MspA1I CMGCKG 1 cut(s) 494
MspCI CTTAAG 1 cut(s) 506
MspI CCGG 1 cut(s) 299
MspR9I CCNGG 3 cut(s) 46, 314, 499
MunI CAATTG 1 cut(s) 171
MvaI CCWGG 3 cut(s) 46, 314, 499
MwoI GCNNNNNNNGC 9 cut(s) 102, 295, 323, 353, 491, 494, 500, 590, 794
NdeII GATC 4 cut(s) 27, 117, 209, 231
NlaIII CATG 3 cut(s) 133, 142, 628
NlaIV GGNNCC 3 cut(s) 192, 325, 585
NmuCI GTSAC 3 cut(s) 37, 742, 844
OliI CACNNNNGTG 1 cut(s) 756
PciSI GCTCTTC 1 cut(s) 5
PkrI GCNGC 5 cut(s) 17, 75, 288, 487, 496
Ple19I CGATCG 1 cut(s) 30
PleI GAGTC 2 cut(s) 252, 760
PpsI GAGTC 2 cut(s) 252, 760
Psp6I CCWGG 3 cut(s) 44, 312, 497
PspGI CCWGG 3 cut(s) 44, 312, 497
PspN4I GGNNCC 3 cut(s) 192, 325, 585
PspPI GGNCC 1 cut(s) 324
PstNI CAGNNNCTG 1 cut(s) 226
PvuI CGATCG 1 cut(s) 30
PvuII CAGCTG 1 cut(s) 494
RsaI GTAC 3 cut(s) 50, 86, 113
RsaNI GTAC 3 cut(s) 49, 85, 112
RseI CAYNNNNRTG 1 cut(s) 756
SapI GCTCTTC 1 cut(s) 5
SaqAI TTAA 3 cut(s) 309, 473, 507
SatI GCNGC 5 cut(s) 16, 74, 287, 486, 495
Sau3AI GATC 4 cut(s) 27, 117, 209, 231
Sau96I GGNCC 1 cut(s) 324
ScaI AGTACT 1 cut(s) 86
SchI GAGTC 2 cut(s) 253, 760
ScrFI CCNGG 3 cut(s) 46, 314, 499
SduI GDGCHC 2 cut(s) 36, 763
SfaNI GCATC 1 cut(s) 186
SfcI CTRYAG 2 cut(s) 318, 798
SmiMI CAYNNNNRTG 1 cut(s) 756
SmlI CTYRAG 1 cut(s) 506
SmoI CTYRAG 1 cut(s) 506
Sse9I AATT 5 cut(s) 171, 474, 556, 700, 885
SsiI CCGC 2 cut(s) 16, 289
SspMI CTAG 2 cut(s) 653, 779
StyD4I CCNGG 3 cut(s) 44, 312, 497
TaaI ACNGT 2 cut(s) 874, 896
TaiI ACGT 1 cut(s) 44
TaqI TCGA 2 cut(s) 208, 560
TasI AATT 5 cut(s) 171, 474, 556, 700, 885
TatI WGTACW 1 cut(s) 84
TauI GCSGC 1 cut(s) 18
Tru1I TTAA 3 cut(s) 309, 473, 507
Tru9I TTAA 3 cut(s) 309, 473, 507
TscAI CASTG 5 cut(s) 349, 442, 519, 763, 901
TseFI GTSAC 3 cut(s) 37, 742, 844
TseI GCWGC 4 cut(s) 73, 286, 485, 494
Tsp45I GTSAC 3 cut(s) 37, 742, 844
TspDTI ATGAA 3 cut(s) 17, 197, 578
TspRI CASTG 5 cut(s) 349, 442, 519, 763, 901
Vha464I CTTAAG 1 cut(s) 506
XapI RAATTY 1 cut(s) 556
XspI CTAG 2 cut(s) 653, 779
ZraI GACGTC 1 cut(s) 42
ZrmI AGTACT 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.