Rh5DG116800

GTP cyclohydrolase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
10569723 .. 10578306
8584 bp
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UTR
Exon/CDS
Intron
Rh5DG116800.1

Sequence Viewer

Length: 210 bp
ATGGATGCTAAGCCTTGTTGTCAAGGTGGAGATGTGATAGTTGTTGTGGAGGCTAACCACACCTATATGATCTGTAGAGGGATTGAGAAGTTTGGAAGTAGCACAGCTACAATTGCAGTACTGGGTCATTTTTCAACTGCCCCTGCTGCAAGGGCAAAACTGTTGTTGGCAAGCAGACTAAGCAATTTCCAGTTTCATGAAGGTGGTTAG

Protein Analysis

69

Amino Acids

7.3

Weight (kDa)

7.78

Isoelectric Point (pI)

23.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GTP_cyclohydroI PF01227 8 - 55 1.3e-07 GTP cyclohydrolase I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000445)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19110 AT4G19110 AT4G19110 AT5G45430 AT5G45430
fragaria_vesca FvH4_2g16890 FvH4_5g19220 FvH4_5g19340 FvH4_5g19350 FvH4_5g19360 FvH4_5g23910 FvH4_7g27810
malus_domestica MD00G1001400.v1.1 MD04G1058900.v1.1 MD04G1059300.v1.1 MD04G1059500.v1.1 MD04G1059600.v1.1 MD04G1059800.v1.1 MD04G1061700.v1.1 MD04G1061800.v1.1 MD06G1014800.v1.1 MD06G1052900.v1.1 MD06G1055500.v1.1
prunus_persica Prupe.5G021300_v2.0.a1 Prupe.5G065900_v2.0.a1 Prupe.5G066500_v2.0.a1
pyrus_communis pycom06g04440
rosa_chinensis RchiOBHm_Chr1g0374681 RchiOBHm_Chr2g0120471 RchiOBHm_Chr2g0120711 RchiOBHm_Chr7g0203821 RchiOBHm_Chr7g0203861 RchiOBHm_Chr7g0208401 RchiOBHm_Chr7g0209011 RchiOBHm_Chr7g0213341
rosa_laevigata RLG00000001348 RLG00000002813 RLG00000003173 RLG00000003212 RLG00000003503 RLG00000022835 RLG00000026723 RLG00000035532
rosa_multiflora Rmu_co7960007.1_g000001 Rmu_co7963796.1_g000001 Rmu_co8519951.1_g000002 Rmu_sc0002038.1_g000009 Rmu_sc0004947.1_g000015 Rmu_sc0007490.1_g000005 Rmu_sc0011180.1_g000003 Rmu_sc0015273.1_g000013 Rmu_ssc0000190.1_g000014 Rmu_ssc0000372.1_g000031
rosa_roxburghii Rroxscaffold_3G00246080 Rroxscaffold_3G00249860 Rroxscaffold_3G00249870 Rroxscaffold_3G00253500 Rroxscaffold_4G00283340
rosa_rugosa Rorug01G0384300 Rorug07G0079000 Rorug07G0079000 Rorug07G0079000 Rorug07G0108300 Rorug07G0141200
rosa_samantha Rh1AG395700 Rh1BG359900 Rh1DG006600 Rh1DG390900 Rh2AG287100 Rh3BG335800 Rh3CG321100 Rh5DG116800 Rh7AG273000 Rh7BG207600 Rh7BG207800 Rh7BG237700 Rh7BG268400 Rh7CG221100 Rh7CG221300 Rh7CG254000 Rh7CG257900 Rh7CG292200 Rh7DG215700 Rh7DG215900 Rh7DG244500 Rh7DG249800 Rh7DG280700
rosa_wichuraiana Rw0G010370 Rw1G035090 Rw2G023020 Rw7G018200 Rw7G020570 Rw7G023690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 120
AgsI TTSAA 1 cut(s) 135
AluBI AGCT 1 cut(s) 107
AluI AGCT 1 cut(s) 107
ApeKI GCWGC 1 cut(s) 146
BbvI GCAGC 1 cut(s) 133
BfmI CTRYAG 1 cut(s) 73
BisI GCNGC 1 cut(s) 147
BlpI GCTNAGC 1 cut(s) 9
BlsI GCNGC 1 cut(s) 148
BmcAI AGTACT 1 cut(s) 120
BmrI ACTGGG 1 cut(s) 131
BmuI ACTGGG 1 cut(s) 131
Bpu1102I GCTNAGC 1 cut(s) 9
Bse1I ACTGG 2 cut(s) 126, 190
BseGI GGATG 1 cut(s) 10
BseNI ACTGG 2 cut(s) 126, 190
BseXI GCAGC 1 cut(s) 133
Bsp143I GATC 1 cut(s) 69
Bsp1720I GCTNAGC 1 cut(s) 9
BspHI TCATGA 1 cut(s) 196
BsrI ACTGG 2 cut(s) 126, 190
BssMI GATC 1 cut(s) 69
Bst4CI ACNGT 1 cut(s) 162
BstC8I GCNNGC 1 cut(s) 172
BstDEI CTNAG 2 cut(s) 9, 179
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 1 cut(s) 72
BstMBI GATC 1 cut(s) 69
BstMWI GCNNNNNNNGC 4 cut(s) 113, 146, 152, 180
BstSFI CTRYAG 1 cut(s) 73
BstV1I GCAGC 1 cut(s) 133
BtsCI GGATG 1 cut(s) 10
Cac8I GCNNGC 1 cut(s) 172
CciI TCATGA 1 cut(s) 196
Csp6I GTAC 1 cut(s) 119
CviAII CATG 1 cut(s) 197
CviJI RGCY 3 cut(s) 13, 53, 107
CviKI_1 RGCY 3 cut(s) 13, 53, 107
CviQI GTAC 1 cut(s) 119
DdeI CTNAG 2 cut(s) 9, 179
DpnI GATC 1 cut(s) 71
DpnII GATC 1 cut(s) 69
FaeI CATG 1 cut(s) 200
FaiI YATR 3 cut(s) 66, 68, 198
FatI CATG 1 cut(s) 196
Fnu4HI GCNGC 1 cut(s) 147
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 147
GluI GCNGC 1 cut(s) 147
Hin1II CATG 1 cut(s) 200
Hpy188III TCNNGA 1 cut(s) 197
HpyAV CCTTC 1 cut(s) 194
HpyCH4III ACNGT 1 cut(s) 162
HpyCH4V TGCA 2 cut(s) 116, 149
HpyF10VI GCNNNNNNNGC 4 cut(s) 113, 146, 152, 180
HpyF3I CTNAG 2 cut(s) 9, 179
Hsp92II CATG 1 cut(s) 200
Kzo9I GATC 1 cut(s) 69
LpnPI CCDG 3 cut(s) 107, 156, 203
Lsp1109I GCAGC 1 cut(s) 133
MalI GATC 1 cut(s) 71
MboI GATC 1 cut(s) 69
MfeI CAATTG 1 cut(s) 111
MluCI AATT 2 cut(s) 111, 184
MnlI CCTC 2 cut(s) 43, 71
MslI CAYNNNNRTG 2 cut(s) 65, 201
MunI CAATTG 1 cut(s) 111
MwoI GCNNNNNNNGC 4 cut(s) 113, 146, 152, 180
NdeII GATC 1 cut(s) 69
NlaIII CATG 1 cut(s) 200
PagI TCATGA 1 cut(s) 196
PkrI GCNGC 1 cut(s) 148
RsaI GTAC 1 cut(s) 120
RsaNI GTAC 1 cut(s) 119
RseI CAYNNNNRTG 2 cut(s) 65, 201
SatI GCNGC 1 cut(s) 147
Sau3AI GATC 1 cut(s) 69
ScaI AGTACT 1 cut(s) 120
SetI ASST 4 cut(s) 28, 65, 109, 205
SfcI CTRYAG 1 cut(s) 73
SgeI CNNG 7 cut(s) 27, 35, 134, 155, 162, 183, 202
SmiMI CAYNNNNRTG 2 cut(s) 65, 201
Sse9I AATT 2 cut(s) 111, 184
TaaI ACNGT 1 cut(s) 162
TasI AATT 2 cut(s) 111, 184
TatI WGTACW 1 cut(s) 118
TseI GCWGC 1 cut(s) 146
TspDTI ATGAA 1 cut(s) 185
ZrmI AGTACT 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.