Rmu_co7960007.1_g000001
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co7960007.1
OG0000445
Physical Location & Seq
Forward (+)
1 .. 214
214 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co7960007.1_g000001.1.cds

Sequence Viewer

Length: 214 bp
cagtgaatcggccatcgatctcatagagtctctttgttcttgggacccttcgaaaaggcctagtgctaaggaagctctccagcatcccttcttcaagagagggcagaatgttgacgctcctcctgggttctcatattgcactcatacaaggaacagtgtggttccgaagatgagagagttatcaaccatgcagccaatactgggagcctattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

70

Amino Acids

7.82

Weight (kDa)

7.79

Isoelectric Point (pI)

63.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000445)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19110 AT4G19110 AT4G19110 AT5G45430 AT5G45430
fragaria_vesca FvH4_2g16890 FvH4_5g19220 FvH4_5g19340 FvH4_5g19350 FvH4_5g19360 FvH4_5g23910 FvH4_7g27810
malus_domestica MD00G1001400.v1.1 MD04G1058900.v1.1 MD04G1059300.v1.1 MD04G1059500.v1.1 MD04G1059600.v1.1 MD04G1059800.v1.1 MD04G1061700.v1.1 MD04G1061800.v1.1 MD06G1014800.v1.1 MD06G1052900.v1.1 MD06G1055500.v1.1
prunus_persica Prupe.5G021300_v2.0.a1 Prupe.5G065900_v2.0.a1 Prupe.5G066500_v2.0.a1
pyrus_communis pycom06g04440
rosa_chinensis RchiOBHm_Chr1g0374681 RchiOBHm_Chr2g0120471 RchiOBHm_Chr2g0120711 RchiOBHm_Chr7g0203821 RchiOBHm_Chr7g0203861 RchiOBHm_Chr7g0208401 RchiOBHm_Chr7g0209011 RchiOBHm_Chr7g0213341
rosa_laevigata RLG00000001348 RLG00000002813 RLG00000003173 RLG00000003212 RLG00000003503 RLG00000022835 RLG00000026723 RLG00000035532
rosa_multiflora Rmu_co7960007.1_g000001 Rmu_co7963796.1_g000001 Rmu_co8519951.1_g000002 Rmu_sc0002038.1_g000009 Rmu_sc0004947.1_g000015 Rmu_sc0007490.1_g000005 Rmu_sc0011180.1_g000003 Rmu_sc0015273.1_g000013 Rmu_ssc0000190.1_g000014 Rmu_ssc0000372.1_g000031
rosa_roxburghii Rroxscaffold_3G00246080 Rroxscaffold_3G00249860 Rroxscaffold_3G00249870 Rroxscaffold_3G00253500 Rroxscaffold_4G00283340
rosa_rugosa Rorug01G0384300 Rorug07G0079000 Rorug07G0079000 Rorug07G0079000 Rorug07G0108300 Rorug07G0141200
rosa_samantha Rh1AG395700 Rh1BG359900 Rh1DG006600 Rh1DG390900 Rh2AG287100 Rh3BG335800 Rh3CG321100 Rh5DG116800 Rh7AG273000 Rh7BG207600 Rh7BG207800 Rh7BG237700 Rh7BG268400 Rh7CG221100 Rh7CG221300 Rh7CG254000 Rh7CG257900 Rh7CG292200 Rh7DG215700 Rh7DG215900 Rh7DG244500 Rh7DG249800 Rh7DG280700
rosa_wichuraiana Rw0G010370 Rw1G035090 Rw2G023020 Rw7G018200 Rw7G020570 Rw7G023690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 10
AfiI CCNNNNNNNGG 1 cut(s) 201
AgsI TTSAA 1 cut(s) 95
AjnI CCWGG 1 cut(s) 122
AluBI AGCT 1 cut(s) 75
AluI AGCT 1 cut(s) 75
Alw26I GTCTC 1 cut(s) 34
AoxI GGCC 2 cut(s) 10, 57
ApeKI GCWGC 1 cut(s) 191
AspS9I GGNCC 1 cut(s) 44
AsuII TTCGAA 1 cut(s) 51
AvaII GGWCC 1 cut(s) 44
BbvI GCAGC 1 cut(s) 203
BccI CCATC 1 cut(s) 21
BciT130I CCWGG 1 cut(s) 124
BcoDI GTCTC 1 cut(s) 34
BfaI CTAG 1 cut(s) 61
BisI GCNGC 1 cut(s) 192
BlsI GCNGC 1 cut(s) 193
Bme1390I CCNGG 1 cut(s) 124
Bme18I GGWCC 1 cut(s) 44
BmgT120I GGNCC 1 cut(s) 44
BmiI GGNNCC 4 cut(s) 45, 46, 163, 206
BmrFI CCNGG 1 cut(s) 124
BmrI ACTGGG 1 cut(s) 210
BmsI GCATC 1 cut(s) 92
BmuI ACTGGG 1 cut(s) 210
BpmI CTGGAG 1 cut(s) 63
Bpu10I CCTNAGC 1 cut(s) 67
Bpu14I TTCGAA 1 cut(s) 51
Bsa29I ATCGAT 1 cut(s) 16
BsaJI CCNNGG 1 cut(s) 123
Bsc4I CCNNNNNNNGG 1 cut(s) 201
Bse1I ACTGG 1 cut(s) 205
BseBI CCWGG 1 cut(s) 124
BseCI ATCGAT 1 cut(s) 16
BseDI CCNNGG 1 cut(s) 123
BseGI GGATG 1 cut(s) 83
BseLI CCNNNNNNNGG 1 cut(s) 201
BseNI ACTGG 1 cut(s) 205
BseRI GAGGAG 1 cut(s) 109
BseXI GCAGC 1 cut(s) 203
BshFI GGCC 2 cut(s) 12, 59
BshVI ATCGAT 1 cut(s) 16
BslFI GGGAC 1 cut(s) 57
BslI CCNNNNNNNGG 1 cut(s) 201
BsmAI GTCTC 1 cut(s) 34
BsmFI GGGAC 1 cut(s) 57
BsnI GGCC 2 cut(s) 12, 59
Bsp119I TTCGAA 1 cut(s) 51
Bsp143I GATC 1 cut(s) 17
BspANI GGCC 2 cut(s) 12, 59
BspDI ATCGAT 1 cut(s) 16
BspLI GGNNCC 4 cut(s) 45, 46, 163, 206
BspT104I TTCGAA 1 cut(s) 51
BsrI ACTGG 1 cut(s) 205
BssECI CCNNGG 1 cut(s) 123
BssMI GATC 1 cut(s) 17
Bst2UI CCWGG 1 cut(s) 124
Bst4CI ACNGT 1 cut(s) 156
BstBI TTCGAA 1 cut(s) 51
BstDEI CTNAG 1 cut(s) 67
BstF5I GGATG 1 cut(s) 83
BstKTI GATC 1 cut(s) 20
BstMAI GTCTC 1 cut(s) 34
BstMBI GATC 1 cut(s) 17
BstMWI GCNNNNNNNGC 1 cut(s) 72
BstNI CCWGG 1 cut(s) 124
BstSCI CCNGG 1 cut(s) 122
BstV1I GCAGC 1 cut(s) 203
Bsu15I ATCGAT 1 cut(s) 16
BsuRI GGCC 2 cut(s) 12, 59
BsuTUI ATCGAT 1 cut(s) 16
BtsCI GGATG 1 cut(s) 83
BtsIMutI CAGTG 2 cut(s) 8, 161
Cfr13I GGNCC 1 cut(s) 44
ClaI ATCGAT 1 cut(s) 16
CseI GACGC 1 cut(s) 123
CviAII CATG 1 cut(s) 188
CviJI RGCY 5 cut(s) 12, 59, 75, 194, 207
CviKI_1 RGCY 5 cut(s) 12, 59, 75, 194, 207
DdeI CTNAG 1 cut(s) 67
DpnI GATC 1 cut(s) 19
DpnII GATC 1 cut(s) 17
EaeI YGGCCR 1 cut(s) 10
Eco147I AGGCCT 1 cut(s) 59
Eco47I GGWCC 1 cut(s) 44
EcoO109I RGGNCCY 1 cut(s) 44
EcoRII CCWGG 1 cut(s) 122
FaeI CATG 1 cut(s) 191
FaiI YATR 4 cut(s) 24, 134, 145, 189
FaqI GGGAC 1 cut(s) 57
FatI CATG 1 cut(s) 187
Fnu4HI GCNGC 1 cut(s) 192
FokI GGATG 1 cut(s) 70
Fsp4HI GCNGC 1 cut(s) 192
FspBI CTAG 1 cut(s) 61
GluI GCNGC 1 cut(s) 192
GsuI CTGGAG 1 cut(s) 63
HaeIII GGCC 2 cut(s) 12, 59
HgaI GACGC 1 cut(s) 123
Hin1II CATG 1 cut(s) 191
HincII GTYRAC 1 cut(s) 113
HindII GTYRAC 1 cut(s) 113
HinfI GANTC 2 cut(s) 6, 27
Hpy166II GTNNAC 1 cut(s) 113
Hpy188I TCNGA 1 cut(s) 166
Hpy188III TCNNGA 1 cut(s) 95
Hpy8I GTNNAC 1 cut(s) 113
HpyAV CCTTC 2 cut(s) 58, 98
HpyCH4III ACNGT 1 cut(s) 156
HpyCH4V TGCA 2 cut(s) 139, 191
HpyF10VI GCNNNNNNNGC 1 cut(s) 72
HpyF3I CTNAG 1 cut(s) 67
Hsp92II CATG 1 cut(s) 191
KflI GGGWCCC 1 cut(s) 44
Kzo9I GATC 1 cut(s) 17
LmnI GCTCC 2 cut(s) 122, 204
LpnPI CCDG 4 cut(s) 93, 109, 136, 186
Lsp1109I GCAGC 1 cut(s) 203
LweI GCATC 1 cut(s) 92
MaeI CTAG 1 cut(s) 61
MalI GATC 1 cut(s) 19
MboI GATC 1 cut(s) 17
MboII GAAGA 2 cut(s) 83, 179
MlyI GAGTC 1 cut(s) 36
MnlI CCTC 2 cut(s) 93, 130
MspR9I CCNGG 1 cut(s) 124
MvaI CCWGG 1 cut(s) 124
MwoI GCNNNNNNNGC 1 cut(s) 72
NdeII GATC 1 cut(s) 17
NlaIII CATG 1 cut(s) 191
NlaIV GGNNCC 4 cut(s) 45, 46, 163, 206
NspV TTCGAA 1 cut(s) 51
PceI AGGCCT 1 cut(s) 59
PfeI GAWTC 1 cut(s) 6
PkrI GCNGC 1 cut(s) 193
PleI GAGTC 1 cut(s) 35
PpsI GAGTC 1 cut(s) 35
PpuMI RGGWCCY 1 cut(s) 44
Psp5II RGGWCCY 1 cut(s) 44
Psp6I CCWGG 1 cut(s) 122
PspGI CCWGG 1 cut(s) 122
PspN4I GGNNCC 4 cut(s) 45, 46, 163, 206
PspPI GGNCC 1 cut(s) 44
PspPPI RGGWCCY 1 cut(s) 44
SatI GCNGC 1 cut(s) 192
Sau3AI GATC 1 cut(s) 17
Sau96I GGNCC 1 cut(s) 44
SchI GAGTC 1 cut(s) 36
ScrFI CCNGG 1 cut(s) 124
SetI ASST 1 cut(s) 77
SfaNI GCATC 1 cut(s) 92
SfuI TTCGAA 1 cut(s) 51
SgeI CNNG 8 cut(s) 52, 73, 92, 107, 135, 136, 160, 200
SinI GGWCC 1 cut(s) 44
SseBI AGGCCT 1 cut(s) 59
SspMI CTAG 1 cut(s) 61
StuI AGGCCT 1 cut(s) 59
StyD4I CCNGG 1 cut(s) 122
TaaI ACNGT 1 cut(s) 156
TaqI TCGA 2 cut(s) 16, 51
TfiI GAWTC 1 cut(s) 6
TscAI CASTG 1 cut(s) 161
TseI GCWGC 1 cut(s) 191
TspRI CASTG 1 cut(s) 161
VpaK11BI GGWCC 1 cut(s) 44
XspI CTAG 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.