RLG00000003212
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
45723282 .. 45724181
900 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003212

Sequence Viewer

Length: 813 bp
ATGGAGAGGTACAAGTTCATGAAGCAAGTAGATGCAGGTAGTTTTGGGCGTGTTTGTAAAGCTGTTGATAAGACGACCGGAGAGTTCGTCGCCATCAAGGAGTTGAAGCACTTGTGTAAGTCTTCATATCTAGAGCTACCAAAAGTCCAAGCACTGACTAGGTTGAAGCACCCAAACGTTGTCAACCTCAAGGGAGTCCAAAGGCTACACGGTGTCGTCTTTTTCATCCTTGAATACATGCAAGATATCCTGTCCCAACTCATTCACCTCAAGGAAAACGTCTCCCAAGGTCTTGTATTTATGCATGTCCAACATGGCTACATCTACCGAGACCTGAAGGCTGACGTACAACTTTGCTGCAAGGGATCGGACATCAACTCCAGCCCACCATTCAGTGATTACATCACCACGCAGTGGTACGGAGCCCCTAGGATGCTGCTAGACTCTTTCCTCTACAACGAAAAGGTTGACATGTGTGCAATAAGAGCGATCATGGCCAAGTGGTTTCTCATGCGCCCTCTGTTTTTGGATTTGAGTTCGCCAAATCGGATGTATCAAATTTGGAGTCATTGGGTTCCAACAAGGGGTTCATGGAGGGAAGGATGTCTTCTTACAAGCCATATGAATTATCAATTTCCACAGATTGATGGTCTTGGTCTTAAAGTAGTGATGCCGTCATGGTTCTGTGATTCTACAGTCGAGCTCATCGAGTCGATTTGTTCTTGGGATCCTTTGAAGAGGCTAACAGCTGCACAAGCTCTTCACCATCCTTTCTTCACTAGAGTCTACAAAGAAAGATTCACATATTGCTAA

Protein Analysis

271

Amino Acids

31.48

Weight (kDa)

8.98

Isoelectric Point (pI)

28.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 4 - 259 1.2e-24 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 5 - 82 9.9e-08 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000445)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19110 AT4G19110 AT4G19110 AT5G45430 AT5G45430
fragaria_vesca FvH4_2g16890 FvH4_5g19220 FvH4_5g19340 FvH4_5g19350 FvH4_5g19360 FvH4_5g23910 FvH4_7g27810
malus_domestica MD00G1001400.v1.1 MD04G1058900.v1.1 MD04G1059300.v1.1 MD04G1059500.v1.1 MD04G1059600.v1.1 MD04G1059800.v1.1 MD04G1061700.v1.1 MD04G1061800.v1.1 MD06G1014800.v1.1 MD06G1052900.v1.1 MD06G1055500.v1.1
prunus_persica Prupe.5G021300_v2.0.a1 Prupe.5G065900_v2.0.a1 Prupe.5G066500_v2.0.a1
pyrus_communis pycom06g04440
rosa_chinensis RchiOBHm_Chr1g0374681 RchiOBHm_Chr2g0120471 RchiOBHm_Chr2g0120711 RchiOBHm_Chr7g0203821 RchiOBHm_Chr7g0203861 RchiOBHm_Chr7g0208401 RchiOBHm_Chr7g0209011 RchiOBHm_Chr7g0213341
rosa_laevigata RLG00000001348 RLG00000002813 RLG00000003173 RLG00000003212 RLG00000003503 RLG00000022835 RLG00000026723 RLG00000035532
rosa_multiflora Rmu_co7960007.1_g000001 Rmu_co7963796.1_g000001 Rmu_co8519951.1_g000002 Rmu_sc0002038.1_g000009 Rmu_sc0004947.1_g000015 Rmu_sc0007490.1_g000005 Rmu_sc0011180.1_g000003 Rmu_sc0015273.1_g000013 Rmu_ssc0000190.1_g000014 Rmu_ssc0000372.1_g000031
rosa_roxburghii Rroxscaffold_3G00246080 Rroxscaffold_3G00249860 Rroxscaffold_3G00249870 Rroxscaffold_3G00253500 Rroxscaffold_4G00283340
rosa_rugosa Rorug01G0384300 Rorug07G0079000 Rorug07G0079000 Rorug07G0079000 Rorug07G0108300 Rorug07G0141200
rosa_samantha Rh1AG395700 Rh1BG359900 Rh1DG006600 Rh1DG390900 Rh2AG287100 Rh3BG335800 Rh3CG321100 Rh5DG116800 Rh7AG273000 Rh7BG207600 Rh7BG207800 Rh7BG237700 Rh7BG268400 Rh7CG221100 Rh7CG221300 Rh7CG254000 Rh7CG257900 Rh7CG292200 Rh7DG215700 Rh7DG215900 Rh7DG244500 Rh7DG249800 Rh7DG280700
rosa_wichuraiana Rw0G010370 Rw1G035090 Rw2G023020 Rw7G018200 Rw7G020570 Rw7G023690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 26
AccB7I CCANNNNNTGG 1 cut(s) 414
AccI GTMKAC 1 cut(s) 786
AclI AACGTT 1 cut(s) 177
AclWI GGATC 3 cut(s) 373, 722, 735
AcoI YGGCCR 1 cut(s) 495
AcsI RAATTY 1 cut(s) 558
AcuI CTGAAG 1 cut(s) 356
AdeI CACNNNGTG 1 cut(s) 414
AfaI GTAC 3 cut(s) 11, 348, 419
AfiI CCNNNNNNNGG 2 cut(s) 414, 584
AflIII ACRYGT 1 cut(s) 471
AgsI TTSAA 4 cut(s) 106, 166, 233, 736
AjuI GAANNNNNNNTTGG 2 cut(s) 571, 603
AluBI AGCT 5 cut(s) 62, 136, 703, 749, 758
AluI AGCT 5 cut(s) 62, 136, 703, 749, 758
Alw21I GWGCWC 1 cut(s) 705
Alw26I GTCTC 2 cut(s) 286, 324
AlwI GGATC 3 cut(s) 373, 722, 735
AoxI GGCC 1 cut(s) 495
ApeKI GCWGC 3 cut(s) 357, 436, 749
ApoI RAATTY 1 cut(s) 558
ArsI GACNNNNNNTTYG 2 cut(s) 550, 582
AspA2I CCTAGG 1 cut(s) 428
AspLEI GCGC 1 cut(s) 516
AsuHPI GGTGA 3 cut(s) 257, 397, 755
AvrII CCTAGG 1 cut(s) 428
BalI TGGCCA 1 cut(s) 497
BamHI GGATCC 1 cut(s) 727
BanII GRGCYC 2 cut(s) 427, 705
BbsI GAAGAC 2 cut(s) 114, 599
Bbv12I GWGCWC 1 cut(s) 705
BbvI GCAGC 3 cut(s) 344, 423, 736
BccI CCATC 3 cut(s) 101, 641, 774
BceAI ACGGC 1 cut(s) 658
BcoDI GTCTC 2 cut(s) 286, 324
BfaI CTAG 5 cut(s) 131, 159, 429, 440, 780
BfmI CTRYAG 1 cut(s) 693
BfuAI ACCTGC 1 cut(s) 26
BisI GCNGC 3 cut(s) 358, 437, 750
BlnI CCTAGG 1 cut(s) 428
BlsI GCNGC 3 cut(s) 359, 438, 751
BmiI GGNNCC 3 cut(s) 424, 576, 729
BmsI GCATC 3 cut(s) 22, 423, 660
BpiI GAAGAC 2 cut(s) 114, 599
BpmI CTGGAG 1 cut(s) 364
BpuEI CTTGAG 2 cut(s) 173, 254
BsaI GGTCTC 1 cut(s) 324
BsaJI CCNNGG 2 cut(s) 286, 428
BsaWI WCCGGW 1 cut(s) 77
BsaXI ACNNNNNCTCC 4 cut(s) 72, 102, 362, 392
Bsc4I CCNNNNNNNGG 2 cut(s) 414, 584
BseDI CCNNGG 2 cut(s) 286, 428
BseGI GGATG 5 cut(s) 225, 438, 555, 608, 766
BseLI CCNNNNNNNGG 2 cut(s) 414, 584
BseXI GCAGC 3 cut(s) 344, 423, 736
BsgI GTGCAG 1 cut(s) 735
Bsh1285I CGRYCG 1 cut(s) 78
BshFI GGCC 1 cut(s) 497
BsiEI CGRYCG 1 cut(s) 78
BsiHKAI GWGCWC 1 cut(s) 705
BsiSI CCGG 1 cut(s) 78
BslFI GGGAC 1 cut(s) 238
BslI CCNNNNNNNGG 2 cut(s) 414, 584
BsmAI GTCTC 2 cut(s) 286, 324
BsmBI CGTCTC 1 cut(s) 286
BsmFI GGGAC 1 cut(s) 238
BsnI GGCC 1 cut(s) 497
Bso31I GGTCTC 1 cut(s) 324
Bsp1286I GDGCHC 2 cut(s) 427, 705
Bsp143I GATC 3 cut(s) 365, 489, 727
BspANI GGCC 1 cut(s) 497
BspHI TCATGA 1 cut(s) 18
BspLI GGNNCC 3 cut(s) 424, 576, 729
BspMI ACCTGC 1 cut(s) 26
BspPI GGATC 3 cut(s) 373, 722, 735
BspQI GCTCTTC 1 cut(s) 765
BspTNI GGTCTC 1 cut(s) 324
BssECI CCNNGG 2 cut(s) 286, 428
BssMI GATC 3 cut(s) 365, 489, 727
BssT1I CCWWGG 2 cut(s) 286, 428
Bst4CI ACNGT 2 cut(s) 212, 697
Bst6I CTCTTC 2 cut(s) 731, 765
BstF5I GGATG 5 cut(s) 225, 438, 555, 608, 766
BstHHI GCGC 1 cut(s) 516
BstKTI GATC 3 cut(s) 368, 492, 730
BstMAI GTCTC 2 cut(s) 286, 324
BstMBI GATC 3 cut(s) 365, 489, 727
BstMCI CGRYCG 1 cut(s) 78
BstMWI GCNNNNNNNGC 3 cut(s) 485, 494, 755
BstNSI RCATGY 3 cut(s) 241, 308, 475
BstSFI CTRYAG 1 cut(s) 693
BstV1I GCAGC 3 cut(s) 344, 423, 736
BstV2I GAAGAC 2 cut(s) 114, 599
BstX2I RGATCY 1 cut(s) 727
BstYI RGATCY 1 cut(s) 727
BsuRI GGCC 1 cut(s) 497
BtsCI GGATG 5 cut(s) 225, 438, 555, 608, 766
BtsI GCAGTG 1 cut(s) 419
BtsIMutI CAGTG 3 cut(s) 152, 400, 419
BveI ACCTGC 1 cut(s) 26
CciI TCATGA 1 cut(s) 18
CfoI GCGC 1 cut(s) 516
Csp6I GTAC 3 cut(s) 10, 347, 418
CviAII CATG 9 cut(s) 19, 238, 305, 314, 472, 493, 511, 591, 678
CviQI GTAC 3 cut(s) 10, 347, 418
DpnI GATC 3 cut(s) 367, 491, 729
DpnII GATC 3 cut(s) 365, 489, 727
DraIII CACNNNGTG 1 cut(s) 414
EaeI YGGCCR 1 cut(s) 495
Eam1104I CTCTTC 2 cut(s) 731, 765
EarI CTCTTC 2 cut(s) 731, 765
Ecl136II GAGCTC 1 cut(s) 703
Eco130I CCWWGG 2 cut(s) 286, 428
Eco24I GRGCYC 2 cut(s) 427, 705
Eco31I GGTCTC 1 cut(s) 324
Eco32I GATATC 1 cut(s) 247
Eco53kI GAGCTC 1 cut(s) 703
Eco57I CTGAAG 1 cut(s) 356
EcoICRI GAGCTC 1 cut(s) 703
EcoRV GATATC 1 cut(s) 247
EcoT14I CCWWGG 2 cut(s) 286, 428
EcoT22I ATGCAT 1 cut(s) 306
EcoT38I GRGCYC 2 cut(s) 427, 705
ErhI CCWWGG 2 cut(s) 286, 428
Esp3I CGTCTC 1 cut(s) 286
FaeI CATG 9 cut(s) 22, 241, 308, 317, 475, 496, 514, 594, 681
FalI AAGNNNNNCTT 2 cut(s) 591, 623
FaqI GGGAC 1 cut(s) 238
FatI CATG 9 cut(s) 18, 237, 304, 313, 471, 492, 510, 590, 677
FauNDI CATATG 1 cut(s) 621
FblI GTMKAC 1 cut(s) 786
Fnu4HI GCNGC 3 cut(s) 358, 437, 750
FokI GGATG 5 cut(s) 212, 445, 562, 615, 753
FriOI GRGCYC 2 cut(s) 427, 705
Fsp4HI GCNGC 3 cut(s) 358, 437, 750
FspBI CTAG 5 cut(s) 131, 159, 429, 440, 780
GlaI GCGC 1 cut(s) 515
GluI GCNGC 3 cut(s) 358, 437, 750
GsuI CTGGAG 1 cut(s) 364
HaeIII GGCC 1 cut(s) 497
HapII CCGG 1 cut(s) 78
HhaI GCGC 1 cut(s) 516
Hin1II CATG 9 cut(s) 22, 241, 308, 317, 475, 496, 514, 594, 681
Hin6I GCGC 1 cut(s) 514
HinP1I GCGC 1 cut(s) 514
HincII GTYRAC 2 cut(s) 184, 469
HindII GTYRAC 2 cut(s) 184, 469
HinfI GANTC 7 cut(s) 195, 443, 565, 689, 710, 783, 798
HpaII CCGG 1 cut(s) 78
HphI GGTGA 3 cut(s) 257, 397, 755
Hpy166II GTNNAC 3 cut(s) 184, 469, 787
Hpy188I TCNGA 2 cut(s) 370, 549
Hpy188III TCNNGA 2 cut(s) 19, 131
Hpy8I GTNNAC 3 cut(s) 184, 469, 787
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 2 cut(s) 331, 593
HpyCH4III ACNGT 2 cut(s) 212, 697
HpyCH4IV ACGT 3 cut(s) 177, 279, 345
HpyCH4V TGCA 6 cut(s) 35, 241, 304, 360, 479, 752
HpyF10VI GCNNNNNNNGC 3 cut(s) 485, 494, 755
HpySE526I ACGT 3 cut(s) 177, 279, 345
Hsp92II CATG 9 cut(s) 22, 241, 308, 317, 475, 496, 514, 594, 681
HspAI GCGC 1 cut(s) 514
Kzo9I GATC 3 cut(s) 365, 489, 727
LguI GCTCTTC 1 cut(s) 765
LmnI GCTCC 1 cut(s) 422
LpnPI CCDG 5 cut(s) 21, 91, 263, 347, 394
Lsp1109I GCAGC 3 cut(s) 344, 423, 736
LweI GCATC 3 cut(s) 22, 423, 660
MaeI CTAG 5 cut(s) 131, 159, 429, 440, 780
MaeII ACGT 3 cut(s) 177, 279, 345
MalI GATC 3 cut(s) 367, 491, 729
MboI GATC 3 cut(s) 365, 489, 727
MboII GAAGA 5 cut(s) 114, 599, 748, 752, 766
MflI RGATCY 1 cut(s) 727
MhlI GDGCHC 2 cut(s) 427, 705
MlsI TGGCCA 1 cut(s) 497
MluCI AATT 3 cut(s) 558, 625, 632
MluNI TGGCCA 1 cut(s) 497
MlyI GAGTC 5 cut(s) 204, 437, 574, 719, 792
MmeI TCCRAC 2 cut(s) 334, 602
MnlI CCTC 6 cut(s) 197, 278, 461, 528, 588, 732
Mox20I TGGCCA 1 cut(s) 497
Mph1103I ATGCAT 1 cut(s) 306
MscI TGGCCA 1 cut(s) 497
MseI TTAA 1 cut(s) 660
Msp20I TGGCCA 1 cut(s) 497
MspA1I CMGCKG 1 cut(s) 749
MspI CCGG 1 cut(s) 78
MwoI GCNNNNNNNGC 3 cut(s) 485, 494, 755
NdeI CATATG 1 cut(s) 621
NdeII GATC 3 cut(s) 365, 489, 727
NlaIII CATG 9 cut(s) 22, 241, 308, 317, 475, 496, 514, 594, 681
NlaIV GGNNCC 3 cut(s) 424, 576, 729
NsiI ATGCAT 1 cut(s) 306
NspI RCATGY 3 cut(s) 241, 308, 475
PagI TCATGA 1 cut(s) 18
PciI ACATGT 1 cut(s) 471
PciSI GCTCTTC 1 cut(s) 765
PcsI WCGNNNNNNNCGW 1 cut(s) 705
PfeI GAWTC 2 cut(s) 689, 798
PflMI CCANNNNNTGG 1 cut(s) 414
PkrI GCNGC 3 cut(s) 359, 438, 751
PleI GAGTC 5 cut(s) 203, 437, 573, 718, 791
PpsI GAGTC 5 cut(s) 203, 437, 573, 718, 791
PscI ACATGT 1 cut(s) 471
Psp124BI GAGCTC 1 cut(s) 705
Psp1406I AACGTT 1 cut(s) 177
PspN4I GGNNCC 3 cut(s) 424, 576, 729
PsuI RGATCY 1 cut(s) 727
PvuII CAGCTG 1 cut(s) 749
RsaI GTAC 3 cut(s) 11, 348, 419
RsaNI GTAC 3 cut(s) 10, 347, 418
SacI GAGCTC 1 cut(s) 705
SapI GCTCTTC 1 cut(s) 765
SaqAI TTAA 1 cut(s) 660
SatI GCNGC 3 cut(s) 358, 437, 750
Sau3AI GATC 3 cut(s) 365, 489, 727
SchI GAGTC 5 cut(s) 204, 437, 574, 719, 792
SduI GDGCHC 2 cut(s) 427, 705
SfaNI GCATC 3 cut(s) 22, 423, 660
SfcI CTRYAG 1 cut(s) 693
SmlI CTYRAG 2 cut(s) 188, 269
SmoI CTYRAG 2 cut(s) 188, 269
Sse9I AATT 3 cut(s) 558, 625, 632
SspMI CTAG 5 cut(s) 131, 159, 429, 440, 780
SstI GAGCTC 1 cut(s) 705
StyI CCWWGG 2 cut(s) 286, 428
TaaI ACNGT 2 cut(s) 212, 697
TaiI ACGT 3 cut(s) 180, 282, 348
TaqI TCGA 3 cut(s) 699, 708, 713
TasI AATT 3 cut(s) 558, 625, 632
TfiI GAWTC 2 cut(s) 689, 798
Tru1I TTAA 1 cut(s) 660
Tru9I TTAA 1 cut(s) 660
TscAI CASTG 3 cut(s) 159, 400, 419
TseI GCWGC 3 cut(s) 357, 436, 749
TspDTI ATGAA 6 cut(s) 7, 35, 114, 214, 579, 638
TspGWI ACGGA 1 cut(s) 435
TspRI CASTG 3 cut(s) 159, 400, 419
Van91I CCANNNNNTGG 1 cut(s) 414
XapI RAATTY 1 cut(s) 558
XbaI TCTAGA 1 cut(s) 130
XceI RCATGY 3 cut(s) 241, 308, 475
XmaJI CCTAGG 1 cut(s) 428
XmiI GTMKAC 1 cut(s) 786
XspI CTAG 5 cut(s) 131, 159, 429, 440, 780
Zsp2I ATGCAT 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.