Rmu_co7963796.1_g000001
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co7963796.1
OG0000445
Physical Location & Seq
Forward (+)
1 .. 351
351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co7963796.1_g000001.1.cds

Sequence Viewer

Length: 312 bp
atttgtagagtcattggggctccaacgaggaatacatggagggagggatgtcttcttgcaagccatatgaactatgaatttccgcagattgatagtcttggtcttagagcagtaatgccgacatgggttagtgattctgcagtagagctcatcgggtcgctttgctcttgggaccctttgaagaggccaacagctgcacaagctcttcaccatcctttcttcactggaggctacaaagattcagcttctactaattactcagctaacaacgttggaaatgtaagctgcctgcagcagcctattctagtctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

103

Amino Acids

11.26

Weight (kDa)

6.99

Isoelectric Point (pI)

40.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000445)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19110 AT4G19110 AT4G19110 AT5G45430 AT5G45430
fragaria_vesca FvH4_2g16890 FvH4_5g19220 FvH4_5g19340 FvH4_5g19350 FvH4_5g19360 FvH4_5g23910 FvH4_7g27810
malus_domestica MD00G1001400.v1.1 MD04G1058900.v1.1 MD04G1059300.v1.1 MD04G1059500.v1.1 MD04G1059600.v1.1 MD04G1059800.v1.1 MD04G1061700.v1.1 MD04G1061800.v1.1 MD06G1014800.v1.1 MD06G1052900.v1.1 MD06G1055500.v1.1
prunus_persica Prupe.5G021300_v2.0.a1 Prupe.5G065900_v2.0.a1 Prupe.5G066500_v2.0.a1
pyrus_communis pycom06g04440
rosa_chinensis RchiOBHm_Chr1g0374681 RchiOBHm_Chr2g0120471 RchiOBHm_Chr2g0120711 RchiOBHm_Chr7g0203821 RchiOBHm_Chr7g0203861 RchiOBHm_Chr7g0208401 RchiOBHm_Chr7g0209011 RchiOBHm_Chr7g0213341
rosa_laevigata RLG00000001348 RLG00000002813 RLG00000003173 RLG00000003212 RLG00000003503 RLG00000022835 RLG00000026723 RLG00000035532
rosa_multiflora Rmu_co7960007.1_g000001 Rmu_co7963796.1_g000001 Rmu_co8519951.1_g000002 Rmu_sc0002038.1_g000009 Rmu_sc0004947.1_g000015 Rmu_sc0007490.1_g000005 Rmu_sc0011180.1_g000003 Rmu_sc0015273.1_g000013 Rmu_ssc0000190.1_g000014 Rmu_ssc0000372.1_g000031
rosa_roxburghii Rroxscaffold_3G00246080 Rroxscaffold_3G00249860 Rroxscaffold_3G00249870 Rroxscaffold_3G00253500 Rroxscaffold_4G00283340
rosa_rugosa Rorug01G0384300 Rorug07G0079000 Rorug07G0079000 Rorug07G0079000 Rorug07G0108300 Rorug07G0141200
rosa_samantha Rh1AG395700 Rh1BG359900 Rh1DG006600 Rh1DG390900 Rh2AG287100 Rh3BG335800 Rh3CG321100 Rh5DG116800 Rh7AG273000 Rh7BG207600 Rh7BG207800 Rh7BG237700 Rh7BG268400 Rh7CG221100 Rh7CG221300 Rh7CG254000 Rh7CG257900 Rh7CG292200 Rh7DG215700 Rh7DG215900 Rh7DG244500 Rh7DG249800 Rh7DG280700
rosa_wichuraiana Rw0G010370 Rw1G035090 Rw2G023020 Rw7G018200 Rw7G020570 Rw7G023690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 83
AclI AACGTT 1 cut(s) 270
AcsI RAATTY 1 cut(s) 77
AgsI TTSAA 1 cut(s) 181
AluBI AGCT 6 cut(s) 148, 194, 203, 245, 263, 285
AluI AGCT 6 cut(s) 148, 194, 203, 245, 263, 285
Alw21I GWGCWC 1 cut(s) 150
AoxI GGCC 1 cut(s) 185
ApeKI GCWGC 4 cut(s) 194, 285, 292, 295
ApoI RAATTY 1 cut(s) 77
AspS9I GGNCC 1 cut(s) 172
AsuHPI GGTGA 1 cut(s) 200
AvaII GGWCC 1 cut(s) 172
BanII GRGCYC 2 cut(s) 22, 150
BbsI GAAGAC 1 cut(s) 44
Bbv12I GWGCWC 1 cut(s) 150
BbvI GCAGC 4 cut(s) 181, 272, 304, 307
BccI CCATC 1 cut(s) 219
BfaI CTAG 2 cut(s) 305, 310
BfmI CTRYAG 2 cut(s) 138, 290
BisI GCNGC 4 cut(s) 195, 286, 293, 296
BlsI GCNGC 4 cut(s) 196, 287, 294, 297
Bme18I GGWCC 1 cut(s) 172
BmgT120I GGNCC 1 cut(s) 172
BmiI GGNNCC 3 cut(s) 21, 173, 174
BpiI GAAGAC 1 cut(s) 44
BpmI CTGGAG 1 cut(s) 246
Bse1I ACTGG 1 cut(s) 229
BseGI GGATG 2 cut(s) 53, 211
BseMII CTCAG 1 cut(s) 273
BseNI ACTGG 1 cut(s) 229
BseXI GCAGC 4 cut(s) 181, 272, 304, 307
BsgI GTGCAG 1 cut(s) 180
BshFI GGCC 1 cut(s) 187
BsiHKAI GWGCWC 1 cut(s) 150
BslFI GGGAC 1 cut(s) 185
BsmFI GGGAC 1 cut(s) 185
BsnI GGCC 1 cut(s) 187
Bsp1286I GDGCHC 2 cut(s) 22, 150
BspACI CCGC 1 cut(s) 83
BspANI GGCC 1 cut(s) 187
BspCNI CTCAG 1 cut(s) 272
BspLI GGNNCC 3 cut(s) 21, 173, 174
BspMAI CTGCAG 2 cut(s) 142, 294
BspQI GCTCTTC 1 cut(s) 210
BsrI ACTGG 1 cut(s) 229
Bst6I CTCTTC 2 cut(s) 176, 210
BstC8I GCNNGC 2 cut(s) 61, 290
BstDEI CTNAG 2 cut(s) 104, 259
BstF5I GGATG 2 cut(s) 53, 211
BstMWI GCNNNNNNNGC 1 cut(s) 200
BstSFI CTRYAG 2 cut(s) 138, 290
BstV1I GCAGC 4 cut(s) 181, 272, 304, 307
BstV2I GAAGAC 1 cut(s) 44
BsuRI GGCC 1 cut(s) 187
BtsCI GGATG 2 cut(s) 53, 211
BtsIMutI CAGTG 1 cut(s) 222
Cac8I GCNNGC 2 cut(s) 61, 290
Cfr13I GGNCC 1 cut(s) 172
CviAII CATG 2 cut(s) 36, 123
DdeI CTNAG 2 cut(s) 104, 259
Eam1104I CTCTTC 2 cut(s) 176, 210
EarI CTCTTC 2 cut(s) 176, 210
Ecl136II GAGCTC 1 cut(s) 148
Eco24I GRGCYC 2 cut(s) 22, 150
Eco47I GGWCC 1 cut(s) 172
Eco53kI GAGCTC 1 cut(s) 148
EcoICRI GAGCTC 1 cut(s) 148
EcoO109I RGGNCCY 1 cut(s) 172
EcoT38I GRGCYC 2 cut(s) 22, 150
FaeI CATG 2 cut(s) 39, 126
FaiI YATR 5 cut(s) 37, 66, 68, 75, 124
FaqI GGGAC 1 cut(s) 185
FatI CATG 2 cut(s) 35, 122
FauNDI CATATG 1 cut(s) 66
Fnu4HI GCNGC 4 cut(s) 195, 286, 293, 296
FokI GGATG 2 cut(s) 60, 198
FriOI GRGCYC 2 cut(s) 22, 150
Fsp4HI GCNGC 4 cut(s) 195, 286, 293, 296
FspBI CTAG 2 cut(s) 305, 310
GluI GCNGC 4 cut(s) 195, 286, 293, 296
GsuI CTGGAG 1 cut(s) 246
HaeIII GGCC 1 cut(s) 187
Hin1II CATG 2 cut(s) 39, 126
HinfI GANTC 3 cut(s) 9, 134, 239
HphI GGTGA 1 cut(s) 200
HpyCH4IV ACGT 1 cut(s) 270
HpyCH4V TGCA 4 cut(s) 59, 140, 197, 292
HpyF10VI GCNNNNNNNGC 1 cut(s) 200
HpyF3I CTNAG 2 cut(s) 104, 259
HpySE526I ACGT 1 cut(s) 270
Hsp92II CATG 2 cut(s) 39, 126
KflI GGGWCCC 1 cut(s) 172
LguI GCTCTTC 1 cut(s) 210
LmnI GCTCC 1 cut(s) 25
LpnPI CCDG 2 cut(s) 210, 302
Lsp1109I GCAGC 4 cut(s) 181, 272, 304, 307
MaeI CTAG 2 cut(s) 305, 310
MaeII ACGT 1 cut(s) 270
MboII GAAGA 4 cut(s) 44, 193, 197, 211
MhlI GDGCHC 2 cut(s) 22, 150
MluCI AATT 2 cut(s) 77, 253
MlyI GAGTC 1 cut(s) 18
MmeI TCCRAC 2 cut(s) 47, 253
MnlI CCTC 5 cut(s) 21, 33, 37, 177, 221
MspA1I CMGCKG 1 cut(s) 194
MwoI GCNNNNNNNGC 1 cut(s) 200
NdeI CATATG 1 cut(s) 66
NlaIII CATG 2 cut(s) 39, 126
NlaIV GGNNCC 3 cut(s) 21, 173, 174
PciSI GCTCTTC 1 cut(s) 210
PfeI GAWTC 2 cut(s) 134, 239
PkrI GCNGC 4 cut(s) 196, 287, 294, 297
PleI GAGTC 1 cut(s) 17
PpsI GAGTC 1 cut(s) 17
PpuMI RGGWCCY 1 cut(s) 172
Psp124BI GAGCTC 1 cut(s) 150
Psp1406I AACGTT 1 cut(s) 270
Psp5II RGGWCCY 1 cut(s) 172
PspN4I GGNNCC 3 cut(s) 21, 173, 174
PspPI GGNCC 1 cut(s) 172
PspPPI RGGWCCY 1 cut(s) 172
PstI CTGCAG 2 cut(s) 142, 294
PvuII CAGCTG 1 cut(s) 194
SacI GAGCTC 1 cut(s) 150
SapI GCTCTTC 1 cut(s) 210
SatI GCNGC 4 cut(s) 195, 286, 293, 296
Sau96I GGNCC 1 cut(s) 172
SchI GAGTC 1 cut(s) 18
SduI GDGCHC 2 cut(s) 22, 150
SetI ASST 7 cut(s) 150, 196, 205, 247, 265, 273, 287
SfcI CTRYAG 2 cut(s) 138, 290
SinI GGWCC 1 cut(s) 172
Sse9I AATT 2 cut(s) 77, 253
SsiI CCGC 1 cut(s) 83
SspMI CTAG 2 cut(s) 305, 310
SstI GAGCTC 1 cut(s) 150
TaiI ACGT 1 cut(s) 273
TasI AATT 2 cut(s) 77, 253
TfiI GAWTC 2 cut(s) 134, 239
TscAI CASTG 1 cut(s) 229
TseI GCWGC 4 cut(s) 194, 285, 292, 295
TspDTI ATGAA 2 cut(s) 83, 90
TspRI CASTG 1 cut(s) 229
VpaK11BI GGWCC 1 cut(s) 172
XapI RAATTY 1 cut(s) 77
XspI CTAG 2 cut(s) 305, 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.