Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000445

Physical Location & Seq

Genomic Coordinates Forward (+)

973013 .. 992485

Gene Structure 19473 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG006600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGCTGCGACCAAGACTAGGACGAGTAGCTTCTCTCGCAGTTTTTTGGGTGCAAGCTCACCTCAAATCCCAGGACTCAAGCATGGACCCAATGAGACAATGTTTGTGTCATTTGGGATTCTAGACCTTGACAGAAGATTGAGAATGGTCAGTGTTATAACTATACCCCTTGACTTATGCTTAATTTTGGGTATGGATGCTAAGCCTTGTTGTGAAGGTGGAGATGTGATAGTTGTTGTGGAGGCTAACCACACCTATATGATCTGTAGAGGGATTGAGAAGTTTGGAAGTAGCACAGCTACAATTGCAGTACTGGGTCATTTTTCAACTGCCCCTGCTGCAAGGGCAAGTTTCTGTAGAGCCTCCCAAACATTGCCATTTCAGGACCGTGATCCTAATTTATCTATTAACTATCAATTCTTTTCTACTCAGTTCCTTGTCTTGGCAGTTTATGCTTCTGAGCCACAAGTCGTTTGTGGCATCTTTGAAGAAAAGAATCAATCAATCGTGTTTCTCAATTCAAGAACTGTTTTTGGCAAGTGGACTAAGCAATTTCCAGAAGTGACAGCAACATTTCTTGTGTTGGTCGACGTATGGCCATTCAATCATTCTGTGCTCCACAGTGTGGATATTCCAGCCTGGAATGGGACATGCTTTCCTTCCTTAGATTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003933 GO:0003934 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006725 GO:0006729 GO:0006732 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0008277 GO:0009058 GO:0009108 GO:0009966 GO:0009987 GO:0010646 GO:0016020 GO:0016787 GO:0016810 GO:0016814 GO:0017076 GO:0017144 GO:0018130 GO:0019001 GO:0019238 GO:0019438 GO:0019637 GO:0019751 GO:0023051 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0034311 GO:0034312 GO:0034641 GO:0035639 GO:0035998 GO:0036094 GO:0042558 GO:0042559 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043169 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046146 GO:0046165 GO:0046173 GO:0046483 GO:0046872 GO:0046914 GO:0046983 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051066 GO:0051186 GO:0051188 GO:0065007 GO:0071704 GO:0090407 GO:0097159 GO:0097367 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00790 ko01100 map00790 map01100

Pfam Domains

Protein Families

GTP_cyclohydroI

Protein Analysis

224

Amino Acids

24.7

Weight (kDa)

6.5

Isoelectric Point (pI)

36.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GTP_cyclohydroI	PF01227	74 - 121	9.5e-07	GTP cyclohydrolase I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19110 AT4G19110 AT4G19110 AT5G45430 AT5G45430
fragaria_vesca	FvH4_2g16890 FvH4_5g19220 FvH4_5g19340 FvH4_5g19350 FvH4_5g19360 FvH4_5g23910 FvH4_7g27810
malus_domestica	MD00G1001400.v1.1 MD04G1058900.v1.1 MD04G1059300.v1.1 MD04G1059500.v1.1 MD04G1059600.v1.1 MD04G1059800.v1.1 MD04G1061700.v1.1 MD04G1061800.v1.1 MD06G1014800.v1.1 MD06G1052900.v1.1 MD06G1055500.v1.1
prunus_persica	Prupe.5G021300_v2.0.a1 Prupe.5G065900_v2.0.a1 Prupe.5G066500_v2.0.a1
pyrus_communis	pycom06g04440
rosa_chinensis	RchiOBHm_Chr1g0374681 RchiOBHm_Chr2g0120471 RchiOBHm_Chr2g0120711 RchiOBHm_Chr7g0203821 RchiOBHm_Chr7g0203861 RchiOBHm_Chr7g0208401 RchiOBHm_Chr7g0209011 RchiOBHm_Chr7g0213341
rosa_laevigata	RLG00000001348 RLG00000002813 RLG00000003173 RLG00000003212 RLG00000003503 RLG00000022835 RLG00000026723 RLG00000035532
rosa_multiflora	Rmu_co7960007.1_g000001 Rmu_co7963796.1_g000001 Rmu_co8519951.1_g000002 Rmu_sc0002038.1_g000009 Rmu_sc0004947.1_g000015 Rmu_sc0007490.1_g000005 Rmu_sc0011180.1_g000003 Rmu_sc0015273.1_g000013 Rmu_ssc0000190.1_g000014 Rmu_ssc0000372.1_g000031
rosa_roxburghii	Rroxscaffold_3G00246080 Rroxscaffold_3G00249860 Rroxscaffold_3G00249870 Rroxscaffold_3G00253500 Rroxscaffold_4G00283340
rosa_rugosa	Rorug01G0384300 Rorug07G0079000 Rorug07G0079000 Rorug07G0079000 Rorug07G0108300 Rorug07G0141200
rosa_samantha	Rh1AG395700 Rh1BG359900 Rh1DG006600 Rh1DG390900 Rh2AG287100 Rh3BG335800 Rh3CG321100 Rh5DG116800 Rh7AG273000 Rh7BG207600 Rh7BG207800 Rh7BG237700 Rh7BG268400 Rh7CG221100 Rh7CG221300 Rh7CG254000 Rh7CG257900 Rh7CG292200 Rh7DG215700 Rh7DG215900 Rh7DG244500 Rh7DG249800 Rh7DG280700
rosa_wichuraiana	Rw0G010370 Rw1G035090 Rw2G023020 Rw7G018200 Rw7G020570 Rw7G023690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	158
AccB7I	CCANNNNNTGG	1 cut(s)	625
AccI	GTMKAC	1 cut(s)	588
AclWI	GGATC	1 cut(s)	386
AcoI	YGGCCR	1 cut(s)	596
AdeI	CACNNNGTG	1 cut(s)	625
AfaI	GTAC	1 cut(s)	312
AfiI	CCNNNNNNNGG	4 cut(s)	18, 442, 625, 645
AgsI	TTSAA	4 cut(s)	327, 488, 522, 604
AjnI	CCWGG	2 cut(s)	70, 638
AluBI	AGCT	3 cut(s)	30, 57, 299
AluI	AGCT	3 cut(s)	30, 57, 299
Alw21I	GWGCWC	1 cut(s)	618
Alw26I	GTCTC	1 cut(s)	89
AlwI	GGATC	1 cut(s)	386
AoxI	GGCC	1 cut(s)	596
ApeKI	GCWGC	2 cut(s)	5, 338
AspS9I	GGNCC	2 cut(s)	86, 385
AsuHPI	GGTGA	1 cut(s)	51
AvaII	GGWCC	2 cut(s)	86, 385
BalI	TGGCCA	1 cut(s)	598
Bbv12I	GWGCWC	1 cut(s)	618
BbvI	GCAGC	1 cut(s)	325
BciT130I	CCWGG	2 cut(s)	72, 640
BcoDI	GTCTC	1 cut(s)	89
BfaI	CTAG	2 cut(s)	18, 122
BfmI	CTRYAG	2 cut(s)	265, 355
BisI	GCNGC	2 cut(s)	6, 339
BlpI	GCTNAGC	1 cut(s)	201
BlsI	GCNGC	2 cut(s)	7, 340
BmcAI	AGTACT	1 cut(s)	312
Bme1390I	CCNGG	2 cut(s)	72, 640
Bme18I	GGWCC	2 cut(s)	86, 385
BmgT120I	GGNCC	2 cut(s)	86, 385
BmiI	GGNNCC	1 cut(s)	88
BmrFI	CCNGG	2 cut(s)	72, 640
BmrI	ACTGGG	1 cut(s)	323
BmsI	GCATC	2 cut(s)	187, 489
BmuI	ACTGGG	1 cut(s)	323
Bpu1102I	GCTNAGC	1 cut(s)	201
BpuEI	CTTGAG	1 cut(s)	62
BsaJI	CCNNGG	1 cut(s)	70
Bsc4I	CCNNNNNNNGG	4 cut(s)	18, 442, 625, 645
Bse1I	ACTGG	1 cut(s)	318
Bse3DI	GCAATG	1 cut(s)	371
BseBI	CCWGG	2 cut(s)	72, 640
BseDI	CCNNGG	1 cut(s)	70
BseGI	GGATG	1 cut(s)	202
BseLI	CCNNNNNNNGG	4 cut(s)	18, 442, 625, 645
BseMI	GCAATG	1 cut(s)	371
BseMII	CTCAG	2 cut(s)	443, 450
BseNI	ACTGG	1 cut(s)	318
BseXI	GCAGC	1 cut(s)	325
BshFI	GGCC	1 cut(s)	598
BsiHKAI	GWGCWC	1 cut(s)	618
BslFI	GGGAC	1 cut(s)	661
BslI	CCNNNNNNNGG	4 cut(s)	18, 442, 625, 645
BsmAI	GTCTC	1 cut(s)	89
BsmFI	GGGAC	1 cut(s)	661
BsnI	GGCC	1 cut(s)	598
Bsp1286I	GDGCHC	1 cut(s)	618
Bsp143I	GATC	2 cut(s)	261, 391
Bsp1720I	GCTNAGC	1 cut(s)	201
BspANI	GGCC	1 cut(s)	598
BspCNI	CTCAG	2 cut(s)	442, 451
BspLI	GGNNCC	1 cut(s)	88
BspPI	GGATC	1 cut(s)	386
BsrDI	GCAATG	1 cut(s)	371
BsrI	ACTGG	1 cut(s)	318
BssECI	CCNNGG	1 cut(s)	70
BssMI	GATC	2 cut(s)	261, 391
Bst2UI	CCWGG	2 cut(s)	72, 640
Bst4CI	ACNGT	3 cut(s)	389, 529, 623
BstAPI	GCANNNNNTGC	1 cut(s)	452
BstC8I	GCNNGC	1 cut(s)	55
BstDEI	CTNAG	5 cut(s)	201, 429, 459, 546, 664
BstF5I	GGATG	1 cut(s)	202
BstKTI	GATC	2 cut(s)	264, 394
BstMAI	GTCTC	1 cut(s)	89
BstMBI	GATC	2 cut(s)	261, 391
BstMWI	GCNNNNNNNGC	5 cut(s)	36, 305, 338, 344, 452
BstNI	CCWGG	2 cut(s)	72, 640
BstNSI	RCATGY	1 cut(s)	654
BstSCI	CCNGG	2 cut(s)	70, 638
BstSFI	CTRYAG	2 cut(s)	265, 355
BstV1I	GCAGC	1 cut(s)	325
BsuRI	GGCC	1 cut(s)	598
BtsCI	GGATG	1 cut(s)	202
BtsIMutI	CAGTG	2 cut(s)	157, 628
Cac8I	GCNNGC	1 cut(s)	55
Cfr13I	GGNCC	2 cut(s)	86, 385
Csp6I	GTAC	1 cut(s)	311
CviAII	CATG	2 cut(s)	83, 651
CviQI	GTAC	1 cut(s)	311
DdeI	CTNAG	5 cut(s)	201, 429, 459, 546, 664
DpnI	GATC	2 cut(s)	263, 393
DpnII	GATC	2 cut(s)	261, 391
DraIII	CACNNNGTG	1 cut(s)	625
EaeI	YGGCCR	1 cut(s)	596
Eco47I	GGWCC	2 cut(s)	86, 385
EcoRII	CCWGG	2 cut(s)	70, 638
FaeI	CATG	2 cut(s)	86, 654
FaqI	GGGAC	1 cut(s)	661
FatI	CATG	2 cut(s)	82, 650
FblI	GTMKAC	1 cut(s)	588
Fnu4HI	GCNGC	2 cut(s)	6, 339
FokI	GGATG	1 cut(s)	209
Fsp4HI	GCNGC	2 cut(s)	6, 339
FspBI	CTAG	2 cut(s)	18, 122
GluI	GCNGC	2 cut(s)	6, 339
HaeIII	GGCC	1 cut(s)	598
Hin1II	CATG	2 cut(s)	86, 654
HincII	GTYRAC	1 cut(s)	589
HindII	GTYRAC	1 cut(s)	589
HinfI	GANTC	3 cut(s)	75, 118, 496
HphI	GGTGA	1 cut(s)	51
Hpy166II	GTNNAC	2 cut(s)	543, 589
Hpy188I	TCNGA	1 cut(s)	460
Hpy188III	TCNNGA	4 cut(s)	122, 383, 522, 557
Hpy8I	GTNNAC	2 cut(s)	543, 589
Hpy99I	CGWCG	1 cut(s)	593
HpyAV	CCTTC	2 cut(s)	209, 669
HpyCH4III	ACNGT	3 cut(s)	389, 529, 623
HpyCH4IV	ACGT	1 cut(s)	591
HpyCH4V	TGCA	3 cut(s)	53, 308, 341
HpyF10VI	GCNNNNNNNGC	5 cut(s)	36, 305, 338, 344, 452
HpyF3I	CTNAG	5 cut(s)	201, 429, 459, 546, 664
HpySE526I	ACGT	1 cut(s)	591
Hsp92II	CATG	2 cut(s)	86, 654
Kzo9I	GATC	2 cut(s)	261, 391
LmnI	GCTCC	1 cut(s)	621
LpnPI	CCDG	9 cut(s)	57, 84, 299, 348, 368, 570, 625, 648, 652
Lsp1109I	GCAGC	1 cut(s)	325
LweI	GCATC	2 cut(s)	187, 489
MaeI	CTAG	2 cut(s)	18, 122
MaeII	ACGT	1 cut(s)	591
MaeIII	GTNAC	1 cut(s)	562
MalI	GATC	2 cut(s)	263, 393
MboI	GATC	2 cut(s)	261, 391
MboII	GAAGA	2 cut(s)	147, 500
MfeI	CAATTG	1 cut(s)	303
MhlI	GDGCHC	1 cut(s)	618
MlsI	TGGCCA	1 cut(s)	598
MluCI	AATT	6 cut(s)	183, 303, 397, 416, 517, 551
MluNI	TGGCCA	1 cut(s)	598
MlyI	GAGTC	1 cut(s)	69
MnlI	CCTC	4 cut(s)	72, 235, 263, 373
Mox20I	TGGCCA	1 cut(s)	598
MscI	TGGCCA	1 cut(s)	598
MseI	TTAA	2 cut(s)	182, 408
MslI	CAYNNNNRTG	1 cut(s)	257
Msp20I	TGGCCA	1 cut(s)	598
MspR9I	CCNGG	2 cut(s)	72, 640
MunI	CAATTG	1 cut(s)	303
MvaI	CCWGG	2 cut(s)	72, 640
MwoI	GCNNNNNNNGC	5 cut(s)	36, 305, 338, 344, 452
NdeII	GATC	2 cut(s)	261, 391
NlaIII	CATG	2 cut(s)	86, 654
NlaIV	GGNNCC	1 cut(s)	88
NmuCI	GTSAC	1 cut(s)	562
NspI	RCATGY	1 cut(s)	654
PfeI	GAWTC	2 cut(s)	118, 496
PflMI	CCANNNNNTGG	1 cut(s)	625
PkrI	GCNGC	2 cut(s)	7, 340
PleI	GAGTC	1 cut(s)	69
PpsI	GAGTC	1 cut(s)	69
PsiI	TTATAA	1 cut(s)	158
Psp6I	CCWGG	2 cut(s)	70, 638
PspGI	CCWGG	2 cut(s)	70, 638
PspN4I	GGNNCC	1 cut(s)	88
PspPI	GGNCC	2 cut(s)	86, 385
RsaI	GTAC	1 cut(s)	312
RsaNI	GTAC	1 cut(s)	311
RseI	CAYNNNNRTG	1 cut(s)	257
SalI	GTCGAC	1 cut(s)	587
SaqAI	TTAA	2 cut(s)	182, 408
SatI	GCNGC	2 cut(s)	6, 339
Sau3AI	GATC	2 cut(s)	261, 391
Sau96I	GGNCC	2 cut(s)	86, 385
ScaI	AGTACT	1 cut(s)	312
SchI	GAGTC	1 cut(s)	69
ScrFI	CCNGG	2 cut(s)	72, 640
SduI	GDGCHC	1 cut(s)	618
SetI	ASST	8 cut(s)	32, 59, 64, 129, 220, 257, 301, 594
SfaNI	GCATC	2 cut(s)	187, 489
SfcI	CTRYAG	2 cut(s)	265, 355
SinI	GGWCC	2 cut(s)	86, 385
SmiMI	CAYNNNNRTG	1 cut(s)	257
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
Sse9I	AATT	6 cut(s)	183, 303, 397, 416, 517, 551
SspMI	CTAG	2 cut(s)	18, 122
StyD4I	CCNGG	2 cut(s)	70, 638
TaaI	ACNGT	3 cut(s)	389, 529, 623
TaiI	ACGT	1 cut(s)	594
TaqI	TCGA	1 cut(s)	588
TasI	AATT	6 cut(s)	183, 303, 397, 416, 517, 551
TatI	WGTACW	1 cut(s)	310
TfiI	GAWTC	2 cut(s)	118, 496
Tru1I	TTAA	2 cut(s)	182, 408
Tru9I	TTAA	2 cut(s)	182, 408
TscAI	CASTG	2 cut(s)	157, 628
TseFI	GTSAC	1 cut(s)	562
TseI	GCWGC	2 cut(s)	5, 338
Tsp45I	GTSAC	1 cut(s)	562
TspRI	CASTG	2 cut(s)	157, 628
Van91I	CCANNNNNTGG	1 cut(s)	625
VpaK11BI	GGWCC	2 cut(s)	86, 385
XbaI	TCTAGA	1 cut(s)	121
XceI	RCATGY	1 cut(s)	654
XmiI	GTMKAC	1 cut(s)	588
XspI	CTAG	2 cut(s)	18, 122
ZrmI	AGTACT	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.