FvH4_5g19220
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000445
Physical Location & Seq
Reverse (-)
11089637 .. 11090413
777 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g19220.t1

Sequence Viewer

Length: 777 bp
ATGGATAGATACCATATCATCAAGAAAGTTGGTGAAGGTAGTTTCGGGCGGGTGTACCAGGCGATCGACCACCTCACCGGTCAATATGTGGCGATCAAACAGTTGAAGCCAAACTGTCATCCCATGTCGTATCTCCCGGAAGTTCGTGCTCTCCAGATTTTGCAGCACCCCAAGATAGTGGGATTCAAGGGAGCTGAACGCCAACACAACACCGTTTTCTTGGTTTTCGAGTACATGGACGGCAGCCTTCGACATCTCATCAACCATAGGATGAGGATGGGAGTCCCTTTCTCGGAAGCCGAGATCAAATTTTTTAGCTTCCAAGTCTTGCAGGGACTCGACTTCATGCATCGAAACCGCCGCTTCATGCACAGGGACATGAAGCCGGAGAATCTATTGGTCAACAAGCATGGCGTCCTCAAGATCTCGGATCTTGGTAGTGCTACGGAGATAGAATCCGATGACAGCCTATTCCACCATCATTATGTCACTACAAGGAGTTATCGTGCCCCGGAGATGCTGCTTCGGATGTTCTTGAAAAACGAGGAGCTTCGACCGTTCGAGTATGATGAGAAAGTCGCCGGCCTCACCCTGAGAACCGACCGGAAAGTCTCCGAACCGGCCGCCGGAAGATTCCAGACCGCCGTCGCTACCGACCACCGGTTCACCACCTTCCTGAACCACCTTCCTTGCTCCGATCAACCTGAATTTTTGACAGAAGCTTCCTCATCCATAGCTGCTCCTCCTGTCAAATTTTCAGCTCGAAATTCGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

259

Amino Acids

29.86

Weight (kDa)

9.28

Isoelectric Point (pI)

51.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 4 - 174 3.3e-45 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 5 - 176 5.4e-25 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000445)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19110 AT4G19110 AT4G19110 AT5G45430 AT5G45430
fragaria_vesca FvH4_2g16890 FvH4_5g19220 FvH4_5g19340 FvH4_5g19350 FvH4_5g19360 FvH4_5g23910 FvH4_7g27810
malus_domestica MD00G1001400.v1.1 MD04G1058900.v1.1 MD04G1059300.v1.1 MD04G1059500.v1.1 MD04G1059600.v1.1 MD04G1059800.v1.1 MD04G1061700.v1.1 MD04G1061800.v1.1 MD06G1014800.v1.1 MD06G1052900.v1.1 MD06G1055500.v1.1
prunus_persica Prupe.5G021300_v2.0.a1 Prupe.5G065900_v2.0.a1 Prupe.5G066500_v2.0.a1
pyrus_communis pycom06g04440
rosa_chinensis RchiOBHm_Chr1g0374681 RchiOBHm_Chr2g0120471 RchiOBHm_Chr2g0120711 RchiOBHm_Chr7g0203821 RchiOBHm_Chr7g0203861 RchiOBHm_Chr7g0208401 RchiOBHm_Chr7g0209011 RchiOBHm_Chr7g0213341
rosa_laevigata RLG00000001348 RLG00000002813 RLG00000003173 RLG00000003212 RLG00000003503 RLG00000022835 RLG00000026723 RLG00000035532
rosa_multiflora Rmu_co7960007.1_g000001 Rmu_co7963796.1_g000001 Rmu_co8519951.1_g000002 Rmu_sc0002038.1_g000009 Rmu_sc0004947.1_g000015 Rmu_sc0007490.1_g000005 Rmu_sc0011180.1_g000003 Rmu_sc0015273.1_g000013 Rmu_ssc0000190.1_g000014 Rmu_ssc0000372.1_g000031
rosa_roxburghii Rroxscaffold_3G00246080 Rroxscaffold_3G00249860 Rroxscaffold_3G00249870 Rroxscaffold_3G00253500 Rroxscaffold_4G00283340
rosa_rugosa Rorug01G0384300 Rorug07G0079000 Rorug07G0079000 Rorug07G0079000 Rorug07G0108300 Rorug07G0141200
rosa_samantha Rh1AG395700 Rh1BG359900 Rh1DG006600 Rh1DG390900 Rh2AG287100 Rh3BG335800 Rh3CG321100 Rh5DG116800 Rh7AG273000 Rh7BG207600 Rh7BG207800 Rh7BG237700 Rh7BG268400 Rh7CG221100 Rh7CG221300 Rh7CG254000 Rh7CG257900 Rh7CG292200 Rh7DG215700 Rh7DG215900 Rh7DG244500 Rh7DG249800 Rh7DG280700
rosa_wichuraiana Rw0G010370 Rw1G035090 Rw2G023020 Rw7G018200 Rw7G020570 Rw7G023690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 608
AciI CCGC 5 cut(s) 49, 358, 361, 624, 642
AclWI GGATC 1 cut(s) 438
AcoI YGGCCR 1 cut(s) 621
AcsI RAATTY 4 cut(s) 308, 707, 752, 766
AcyI GRCGYC 1 cut(s) 414
AfaI GTAC 2 cut(s) 56, 233
AfiI CCNNNNNNNGG 3 cut(s) 292, 626, 660
AgeI ACCGGT 2 cut(s) 77, 660
AgsI TTSAA 3 cut(s) 106, 187, 538
AjnI CCWGG 1 cut(s) 57
AluBI AGCT 6 cut(s) 194, 318, 550, 722, 737, 761
AluI AGCT 6 cut(s) 194, 318, 550, 722, 737, 761
Alw21I GWGCWC 1 cut(s) 151
Alw26I GTCTC 1 cut(s) 616
AlwI GGATC 1 cut(s) 438
AoxI GGCC 2 cut(s) 583, 621
ApeKI GCWGC 4 cut(s) 163, 243, 520, 737
ApoI RAATTY 4 cut(s) 308, 707, 752, 766
AsiGI ACCGGT 2 cut(s) 77, 660
AsuC2I CCSGG 2 cut(s) 137, 512
AsuHPI GGTGA 4 cut(s) 44, 67, 580, 658
AsuII TTCGAA 1 cut(s) 770
BaeGI GKGCMC 1 cut(s) 511
Bbv12I GWGCWC 1 cut(s) 151
BbvI GCAGC 4 cut(s) 175, 255, 507, 724
BccI CCATC 2 cut(s) 271, 486
BceAI ACGGC 2 cut(s) 256, 629
BciT130I CCWGG 1 cut(s) 59
BcnI CCSGG 2 cut(s) 137, 512
BcoDI GTCTC 1 cut(s) 616
BglII AGATCT 1 cut(s) 423
BisI GCNGC 6 cut(s) 164, 244, 361, 521, 624, 738
BlsI GCNGC 6 cut(s) 165, 245, 362, 522, 625, 739
Bme1390I CCNGG 3 cut(s) 59, 137, 512
BmrFI CCNGG 3 cut(s) 59, 137, 512
BmsI GCATC 2 cut(s) 358, 507
BoxI GACNNNNGTC 1 cut(s) 644
BpmI CTGGAG 1 cut(s) 137
Bpu14I TTCGAA 1 cut(s) 770
BpuEI CTTGAG 1 cut(s) 404
BpuMI CCSGG 2 cut(s) 137, 512
BsaHI GRCGYC 1 cut(s) 414
BsaJI CCNNGG 1 cut(s) 510
BsaWI WCCGGW 3 cut(s) 77, 603, 660
BsaXI ACNNNNNCTCC 2 cut(s) 490, 520
Bsc4I CCNNNNNNNGG 3 cut(s) 292, 626, 660
Bse118I RCCGGY 4 cut(s) 77, 581, 619, 660
BseBI CCWGG 1 cut(s) 59
BseDI CCNNGG 1 cut(s) 510
BseGI GGATG 5 cut(s) 118, 276, 282, 534, 728
BseLI CCNNNNNNNGG 3 cut(s) 292, 626, 660
BseMII CTCAG 1 cut(s) 584
BseRI GAGGAG 2 cut(s) 560, 732
BseSI GKGCMC 1 cut(s) 511
BseX3I CGGCCG 1 cut(s) 621
BseXI GCAGC 4 cut(s) 175, 255, 507, 724
Bsh1285I CGRYCG 4 cut(s) 66, 557, 604, 624
BshFI GGCC 2 cut(s) 585, 623
BshTI ACCGGT 2 cut(s) 77, 660
BsiEI CGRYCG 4 cut(s) 66, 557, 604, 624
BsiHKAI GWGCWC 1 cut(s) 151
BsiSI CCGG 9 cut(s) 78, 137, 386, 512, 582, 604, 620, 627, 661
BslFI GGGAC 3 cut(s) 269, 348, 389
BslI CCNNNNNNNGG 3 cut(s) 292, 626, 660
BsmAI GTCTC 1 cut(s) 616
BsmFI GGGAC 3 cut(s) 269, 348, 389
BsnI GGCC 2 cut(s) 585, 623
Bsp119I TTCGAA 1 cut(s) 770
Bsp1286I GDGCHC 2 cut(s) 151, 511
Bsp143I GATC 6 cut(s) 63, 93, 303, 423, 430, 697
BspACI CCGC 5 cut(s) 49, 358, 361, 624, 642
BspANI GGCC 2 cut(s) 585, 623
BspCNI CTCAG 1 cut(s) 585
BspPI GGATC 1 cut(s) 438
BspT104I TTCGAA 1 cut(s) 770
BsrFI RCCGGY 4 cut(s) 77, 581, 619, 660
BssAI RCCGGY 4 cut(s) 77, 581, 619, 660
BssECI CCNNGG 1 cut(s) 510
BssMI GATC 6 cut(s) 63, 93, 303, 423, 430, 697
BssNI GRCGYC 1 cut(s) 414
Bst2UI CCWGG 1 cut(s) 59
Bst4CI ACNGT 4 cut(s) 102, 116, 214, 558
BstACI GRCGYC 1 cut(s) 414
BstBI TTCGAA 1 cut(s) 770
BstC8I GCNNGC 1 cut(s) 583
BstDEI CTNAG 1 cut(s) 593
BstF5I GGATG 5 cut(s) 118, 276, 282, 534, 728
BstKTI GATC 6 cut(s) 66, 96, 306, 426, 433, 700
BstMAI GTCTC 1 cut(s) 616
BstMBI GATC 6 cut(s) 63, 93, 303, 423, 430, 697
BstMCI CGRYCG 4 cut(s) 66, 557, 604, 624
BstNI CCWGG 1 cut(s) 59
BstPAI GACNNNNGTC 1 cut(s) 644
BstSCI CCNGG 3 cut(s) 57, 135, 510
BstSLI GKGCMC 1 cut(s) 511
BstV1I GCAGC 4 cut(s) 175, 255, 507, 724
BstX2I RGATCY 2 cut(s) 423, 430
BstXI CCANNNNNNTGG 1 cut(s) 178
BstYI RGATCY 2 cut(s) 423, 430
BstZI CGGCCG 1 cut(s) 621
BsuRI GGCC 2 cut(s) 585, 623
BtsCI GGATG 5 cut(s) 118, 276, 282, 534, 728
Cac8I GCNNGC 1 cut(s) 583
Cfr10I RCCGGY 4 cut(s) 77, 581, 619, 660
CseI GACGC 1 cut(s) 403
Csp6I GTAC 2 cut(s) 55, 232
CspAI ACCGGT 2 cut(s) 77, 660
CspCI CAANNNNNGTGG 2 cut(s) 671, 706
CviAII CATG 6 cut(s) 124, 235, 346, 367, 379, 410
CviQI GTAC 2 cut(s) 55, 232
DdeI CTNAG 1 cut(s) 593
DpnI GATC 6 cut(s) 65, 95, 305, 425, 432, 699
DpnII GATC 6 cut(s) 63, 93, 303, 423, 430, 697
DrdI GACNNNNNNGTC 1 cut(s) 608
DseDI GACNNNNNNGTC 1 cut(s) 608
EaeI YGGCCR 1 cut(s) 621
EagI CGGCCG 1 cut(s) 621
EclXI CGGCCG 1 cut(s) 621
Eco52I CGGCCG 1 cut(s) 621
EcoRII CCWGG 1 cut(s) 57
EcoT22I ATGCAT 1 cut(s) 351
FaeI CATG 6 cut(s) 127, 238, 349, 370, 382, 413
FaqI GGGAC 3 cut(s) 269, 348, 389
FatI CATG 6 cut(s) 123, 234, 345, 366, 378, 409
FauI CCCGC 1 cut(s) 42
Fnu4HI GCNGC 6 cut(s) 164, 244, 361, 521, 624, 738
FokI GGATG 5 cut(s) 105, 283, 289, 541, 715
Fsp4HI GCNGC 6 cut(s) 164, 244, 361, 521, 624, 738
GluI GCNGC 6 cut(s) 164, 244, 361, 521, 624, 738
GsuI CTGGAG 1 cut(s) 137
HaeIII GGCC 2 cut(s) 585, 623
HapII CCGG 9 cut(s) 78, 137, 386, 512, 582, 604, 620, 627, 661
HgaI GACGC 1 cut(s) 403
Hin1I GRCGYC 1 cut(s) 414
Hin1II CATG 6 cut(s) 127, 238, 349, 370, 382, 413
HincII GTYRAC 1 cut(s) 403
HindII GTYRAC 1 cut(s) 403
HindIII AAGCTT 1 cut(s) 720
HinfI GANTC 6 cut(s) 183, 282, 336, 391, 455, 633
HpaII CCGG 9 cut(s) 78, 137, 386, 512, 582, 604, 620, 627, 661
HphI GGTGA 4 cut(s) 44, 67, 580, 658
Hpy166II GTNNAC 3 cut(s) 55, 403, 666
Hpy188I TCNGA 6 cut(s) 295, 430, 460, 528, 616, 697
Hpy188III TCNNGA 6 cut(s) 22, 154, 421, 535, 637, 676
Hpy8I GTNNAC 3 cut(s) 55, 403, 666
Hpy99I CGWCG 1 cut(s) 650
HpyAV CCTTC 4 cut(s) 29, 257, 682, 695
HpyCH4III ACNGT 4 cut(s) 102, 116, 214, 558
HpyCH4V TGCA 4 cut(s) 163, 331, 349, 370
HpyF3I CTNAG 1 cut(s) 593
Hsp92I GRCGYC 1 cut(s) 414
Hsp92II CATG 6 cut(s) 127, 238, 349, 370, 382, 413
KroI GCCGGC 1 cut(s) 581
KroNI GCCGGC 1 cut(s) 583
Kzo9I GATC 6 cut(s) 63, 93, 303, 423, 430, 697
LmnI GCTCC 4 cut(s) 191, 547, 698, 745
Lsp1109I GCAGC 4 cut(s) 175, 255, 507, 724
LweI GCATC 2 cut(s) 358, 507
MaeIII GTNAC 1 cut(s) 487
MalI GATC 6 cut(s) 65, 95, 305, 425, 432, 699
MboI GATC 6 cut(s) 63, 93, 303, 423, 430, 697
MboII GAAGA 1 cut(s) 642
MflI RGATCY 2 cut(s) 423, 430
MhlI GDGCHC 2 cut(s) 151, 511
MluCI AATT 4 cut(s) 308, 707, 752, 766
MlyI GAGTC 2 cut(s) 291, 330
MnlI CCTC 7 cut(s) 83, 267, 428, 538, 596, 736, 753
Mph1103I ATGCAT 1 cut(s) 351
MroNI GCCGGC 1 cut(s) 581
MslI CAYNNNNRTG 1 cut(s) 483
MspI CCGG 9 cut(s) 78, 137, 386, 512, 582, 604, 620, 627, 661
MspR9I CCNGG 3 cut(s) 59, 137, 512
MvaI CCWGG 1 cut(s) 59
NaeI GCCGGC 1 cut(s) 583
NciI CCSGG 2 cut(s) 137, 512
NdeII GATC 6 cut(s) 63, 93, 303, 423, 430, 697
NgoMIV GCCGGC 1 cut(s) 581
NlaIII CATG 6 cut(s) 127, 238, 349, 370, 382, 413
NmeAIII GCCGAG 1 cut(s) 325
NmuCI GTSAC 1 cut(s) 487
NsiI ATGCAT 1 cut(s) 351
NspV TTCGAA 1 cut(s) 770
PdiI GCCGGC 1 cut(s) 583
PfeI GAWTC 4 cut(s) 183, 391, 455, 633
PfoI TCCNGGA 1 cut(s) 135
PinAI ACCGGT 2 cut(s) 77, 660
PkrI GCNGC 6 cut(s) 165, 245, 362, 522, 625, 739
Ple19I CGATCG 1 cut(s) 66
PleI GAGTC 2 cut(s) 290, 330
PpsI GAGTC 2 cut(s) 290, 330
PshAI GACNNNNGTC 1 cut(s) 644
Psp6I CCWGG 1 cut(s) 57
PspGI CCWGG 1 cut(s) 57
PsuI RGATCY 2 cut(s) 423, 430
PvuI CGATCG 1 cut(s) 66
RsaI GTAC 2 cut(s) 56, 233
RsaNI GTAC 2 cut(s) 55, 232
RseI CAYNNNNRTG 1 cut(s) 483
SatI GCNGC 6 cut(s) 164, 244, 361, 521, 624, 738
Sau3AI GATC 6 cut(s) 63, 93, 303, 423, 430, 697
SchI GAGTC 2 cut(s) 291, 330
ScrFI CCNGG 3 cut(s) 59, 137, 512
SduI GDGCHC 2 cut(s) 151, 511
SfaNI GCATC 2 cut(s) 358, 507
SfuI TTCGAA 1 cut(s) 770
SmiMI CAYNNNNRTG 1 cut(s) 483
SmlI CTYRAG 1 cut(s) 419
SmoI CTYRAG 1 cut(s) 419
Sse9I AATT 4 cut(s) 308, 707, 752, 766
SsiI CCGC 5 cut(s) 49, 358, 361, 624, 642
StyD4I CCNGG 3 cut(s) 57, 135, 510
TaaI ACNGT 4 cut(s) 102, 116, 214, 558
TaqI TCGA 9 cut(s) 66, 228, 250, 339, 352, 553, 561, 763, 770
TasI AATT 4 cut(s) 308, 707, 752, 766
TatI WGTACW 1 cut(s) 231
TauI GCSGC 2 cut(s) 363, 626
TfiI GAWTC 4 cut(s) 183, 391, 455, 633
TseFI GTSAC 1 cut(s) 487
TseI GCWGC 4 cut(s) 163, 243, 520, 737
Tsp45I GTSAC 1 cut(s) 487
TspDTI ATGAA 3 cut(s) 334, 355, 395
TspGWI ACGGA 1 cut(s) 461
XapI RAATTY 4 cut(s) 308, 707, 752, 766
Zsp2I ATGCAT 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.