FvH4_5g19340
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000445
Physical Location & Seq
Forward (+)
11199033 .. 11199868
836 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g19340.t1

Sequence Viewer

Length: 735 bp
ATGGAGTACATGGAGGGAAGCCTTCATGATCTCATCCGGCAAAGGTTGTGCTTGGGAGTCCCGTTTTCGGAGGCTGAAGTACGAACACTGAGCTTTCAACTCTTTCAAGGCCTCGACTTTATGCATATCGAGGGCCGCTTCATGCATAGGGACTTGAAGCCGGCGAACCTTTTGGTGAACAAGAGAGTCCTCAAGATATCTGATCTCGGTGCTGCTACTCAGATTGATTCGAGGGGGCCGTTCAATCACTATGTGACTACAAGGTTCTATCGGGCCCCCGAGATGCTGATTCGAAGTTATGAGAAAGACGAGAGGTGTCGGCCCTTTGTTTATGATGAGAAAGTGGATATGTGGGCTGCAGGGACCATCCTAGCAGAGTTGTTTATGATGTTTCCACTGTTTAGGGGTGAGAGTTCTGCACATCAGCTACAGAAGATATGTGAAGTTATTGGGGCTCCGACTAACGATTCATGGATGGGAAGACTGATGAACGTTCCCAAATTTGAGCCGGAGAAAGGTTGTGGTCTTCGAGCATGCATTCCAAATGCAAGCCAATCGGCTCTCGATCTCATTGGCTCTCTGTTATCTTGGGACCCTGCAAAGAGGCCTAGCGCAGAGGAAGCACTTCAGCATCCTTTCTTCACCAAAGCCAACAATGTTGAGGCAACAAGGTTATCATGCTGTGCAGTTCCAAAGGCAACAGAGTTACCATACATGCAGCAGCCAATATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

245

Amino Acids

27.83

Weight (kDa)

6.6

Isoelectric Point (pI)

57.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 1 - 214 3e-42 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 1 - 129 7.4e-11 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000445)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19110 AT4G19110 AT4G19110 AT5G45430 AT5G45430
fragaria_vesca FvH4_2g16890 FvH4_5g19220 FvH4_5g19340 FvH4_5g19350 FvH4_5g19360 FvH4_5g23910 FvH4_7g27810
malus_domestica MD00G1001400.v1.1 MD04G1058900.v1.1 MD04G1059300.v1.1 MD04G1059500.v1.1 MD04G1059600.v1.1 MD04G1059800.v1.1 MD04G1061700.v1.1 MD04G1061800.v1.1 MD06G1014800.v1.1 MD06G1052900.v1.1 MD06G1055500.v1.1
prunus_persica Prupe.5G021300_v2.0.a1 Prupe.5G065900_v2.0.a1 Prupe.5G066500_v2.0.a1
pyrus_communis pycom06g04440
rosa_chinensis RchiOBHm_Chr1g0374681 RchiOBHm_Chr2g0120471 RchiOBHm_Chr2g0120711 RchiOBHm_Chr7g0203821 RchiOBHm_Chr7g0203861 RchiOBHm_Chr7g0208401 RchiOBHm_Chr7g0209011 RchiOBHm_Chr7g0213341
rosa_laevigata RLG00000001348 RLG00000002813 RLG00000003173 RLG00000003212 RLG00000003503 RLG00000022835 RLG00000026723 RLG00000035532
rosa_multiflora Rmu_co7960007.1_g000001 Rmu_co7963796.1_g000001 Rmu_co8519951.1_g000002 Rmu_sc0002038.1_g000009 Rmu_sc0004947.1_g000015 Rmu_sc0007490.1_g000005 Rmu_sc0011180.1_g000003 Rmu_sc0015273.1_g000013 Rmu_ssc0000190.1_g000014 Rmu_ssc0000372.1_g000031
rosa_roxburghii Rroxscaffold_3G00246080 Rroxscaffold_3G00249860 Rroxscaffold_3G00249870 Rroxscaffold_3G00253500 Rroxscaffold_4G00283340
rosa_rugosa Rorug01G0384300 Rorug07G0079000 Rorug07G0079000 Rorug07G0079000 Rorug07G0108300 Rorug07G0141200
rosa_samantha Rh1AG395700 Rh1BG359900 Rh1DG006600 Rh1DG390900 Rh2AG287100 Rh3BG335800 Rh3CG321100 Rh5DG116800 Rh7AG273000 Rh7BG207600 Rh7BG207800 Rh7BG237700 Rh7BG268400 Rh7CG221100 Rh7CG221300 Rh7CG254000 Rh7CG257900 Rh7CG292200 Rh7DG215700 Rh7DG215900 Rh7DG244500 Rh7DG249800 Rh7DG280700
rosa_wichuraiana Rw0G010370 Rw1G035090 Rw2G023020 Rw7G018200 Rw7G020570 Rw7G023690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 136
AclI AACGTT 1 cut(s) 492
AcsI RAATTY 1 cut(s) 500
AcuI CTGAAG 2 cut(s) 96, 611
AdeI CACNNNGTG 1 cut(s) 253
AfaI GTAC 2 cut(s) 8, 81
AfiI CCNNNNNNNGG 2 cut(s) 67, 515
AgsI TTSAA 4 cut(s) 98, 107, 157, 244
AluBI AGCT 2 cut(s) 93, 427
AluI AGCT 2 cut(s) 93, 427
Ama87I CYCGRG 1 cut(s) 278
AoxI GGCC 6 cut(s) 109, 133, 236, 273, 320, 605
ApaI GGGCCC 1 cut(s) 277
ApeKI GCWGC 4 cut(s) 212, 356, 718, 721
ApoI RAATTY 1 cut(s) 500
Asp700I GAANNNNTTC 1 cut(s) 624
AspLEI GCGC 1 cut(s) 614
AspS9I GGNCC 7 cut(s) 133, 236, 273, 274, 321, 363, 592
AsuHPI GGTGA 3 cut(s) 187, 419, 634
AsuII TTCGAA 1 cut(s) 292
AvaI CYCGRG 1 cut(s) 278
AvaII GGWCC 2 cut(s) 363, 592
BaeGI GKGCMC 1 cut(s) 277
BanII GRGCYC 2 cut(s) 277, 457
BbsI GAAGAC 2 cut(s) 487, 518
BbvI GCAGC 3 cut(s) 199, 343, 730
BccI CCATC 2 cut(s) 374, 469
BceAI ACGGC 1 cut(s) 223
BcgI CGANNNNNNTGC 2 cut(s) 537, 571
BfaI CTAG 2 cut(s) 371, 609
BfmI CTRYAG 2 cut(s) 357, 428
BisI GCNGC 5 cut(s) 136, 213, 357, 719, 722
BlsI GCNGC 5 cut(s) 137, 214, 358, 720, 723
Bme18I GGWCC 2 cut(s) 363, 592
BmeT110I CYCGRG 1 cut(s) 278
BmgT120I GGNCC 7 cut(s) 133, 236, 273, 274, 321, 363, 592
BmiI GGNNCC 7 cut(s) 237, 275, 276, 364, 456, 593, 594
BmsI GCATC 2 cut(s) 273, 640
BpiI GAAGAC 2 cut(s) 487, 518
Bpu14I TTCGAA 1 cut(s) 292
BpuEI CTTGAG 1 cut(s) 176
Bsc4I CCNNNNNNNGG 2 cut(s) 67, 515
Bse118I RCCGGY 1 cut(s) 160
BseGI GGATG 4 cut(s) 33, 366, 480, 631
BseLI CCNNNNNNNGG 2 cut(s) 67, 515
BseMII CTCAG 2 cut(s) 80, 233
BseSI GKGCMC 1 cut(s) 277
BseXI GCAGC 3 cut(s) 199, 343, 730
BsgI GTGCAG 2 cut(s) 402, 705
BshFI GGCC 6 cut(s) 111, 135, 238, 275, 322, 607
BsiHKCI CYCGRG 1 cut(s) 278
BsiSI CCGG 3 cut(s) 37, 161, 509
BslFI GGGAC 4 cut(s) 44, 164, 376, 605
BslI CCNNNNNNNGG 2 cut(s) 67, 515
BsmFI GGGAC 4 cut(s) 44, 164, 376, 605
BsmI GAATGC 1 cut(s) 537
BsnI GGCC 6 cut(s) 111, 135, 238, 275, 322, 607
BsoBI CYCGRG 1 cut(s) 278
Bsp119I TTCGAA 1 cut(s) 292
Bsp120I GGGCCC 1 cut(s) 273
Bsp1286I GDGCHC 2 cut(s) 277, 457
Bsp143I GATC 3 cut(s) 28, 202, 565
BspACI CCGC 1 cut(s) 136
BspANI GGCC 6 cut(s) 111, 135, 238, 275, 322, 607
BspCNI CTCAG 2 cut(s) 81, 232
BspHI TCATGA 1 cut(s) 25
BspLI GGNNCC 7 cut(s) 237, 275, 276, 364, 456, 593, 594
BspMAI CTGCAG 1 cut(s) 361
BspT104I TTCGAA 1 cut(s) 292
BsrFI RCCGGY 1 cut(s) 160
BssAI RCCGGY 1 cut(s) 160
BssMI GATC 3 cut(s) 28, 202, 565
Bst4CI ACNGT 1 cut(s) 399
BstBI TTCGAA 1 cut(s) 292
BstC8I GCNNGC 3 cut(s) 162, 535, 550
BstDEI CTNAG 2 cut(s) 89, 219
BstF5I GGATG 4 cut(s) 33, 366, 480, 631
BstHHI GCGC 1 cut(s) 614
BstKTI GATC 3 cut(s) 31, 205, 568
BstMBI GATC 3 cut(s) 28, 202, 565
BstMWI GCNNNNNNNGC 1 cut(s) 620
BstNSI RCATGY 2 cut(s) 537, 718
BstSFI CTRYAG 2 cut(s) 357, 428
BstSLI GKGCMC 1 cut(s) 277
BstV1I GCAGC 3 cut(s) 199, 343, 730
BstV2I GAAGAC 2 cut(s) 487, 518
BsuRI GGCC 6 cut(s) 111, 135, 238, 275, 322, 607
BtsCI GGATG 4 cut(s) 33, 366, 480, 631
BtsIMutI CAGTG 2 cut(s) 86, 395
Cac8I GCNNGC 3 cut(s) 162, 535, 550
CciI TCATGA 1 cut(s) 25
CfoI GCGC 1 cut(s) 614
Cfr10I RCCGGY 1 cut(s) 160
Cfr13I GGNCC 7 cut(s) 133, 236, 273, 274, 321, 363, 592
Csp6I GTAC 2 cut(s) 7, 80
CviAII CATG 7 cut(s) 10, 26, 142, 471, 534, 678, 715
CviQI GTAC 2 cut(s) 7, 80
DdeI CTNAG 2 cut(s) 89, 219
DpnI GATC 3 cut(s) 30, 204, 567
DpnII GATC 3 cut(s) 28, 202, 565
DraIII CACNNNGTG 1 cut(s) 253
Eco147I AGGCCT 2 cut(s) 111, 607
Eco24I GRGCYC 2 cut(s) 277, 457
Eco32I GATATC 1 cut(s) 198
Eco47I GGWCC 2 cut(s) 363, 592
Eco57I CTGAAG 2 cut(s) 96, 611
Eco88I CYCGRG 1 cut(s) 278
EcoO109I RGGNCCY 2 cut(s) 274, 592
EcoRV GATATC 1 cut(s) 198
EcoT22I ATGCAT 3 cut(s) 126, 147, 539
EcoT38I GRGCYC 2 cut(s) 277, 457
FaeI CATG 7 cut(s) 13, 29, 145, 474, 537, 681, 718
FaqI GGGAC 4 cut(s) 44, 164, 376, 605
FatI CATG 7 cut(s) 9, 25, 141, 470, 533, 677, 714
Fnu4HI GCNGC 5 cut(s) 136, 213, 357, 719, 722
FokI GGATG 4 cut(s) 20, 353, 487, 618
FriOI GRGCYC 2 cut(s) 277, 457
Fsp4HI GCNGC 5 cut(s) 136, 213, 357, 719, 722
FspBI CTAG 2 cut(s) 371, 609
GlaI GCGC 1 cut(s) 613
GluI GCNGC 5 cut(s) 136, 213, 357, 719, 722
HaeIII GGCC 6 cut(s) 111, 135, 238, 275, 322, 607
HapII CCGG 3 cut(s) 37, 161, 509
HhaI GCGC 1 cut(s) 614
Hin1II CATG 7 cut(s) 13, 29, 145, 474, 537, 681, 718
Hin6I GCGC 1 cut(s) 612
HinP1I GCGC 1 cut(s) 612
HinfI GANTC 5 cut(s) 57, 186, 227, 289, 467
HpaII CCGG 3 cut(s) 37, 161, 509
HphI GGTGA 3 cut(s) 187, 419, 634
Hpy166II GTNNAC 1 cut(s) 178
Hpy188I TCNGA 4 cut(s) 70, 202, 222, 459
Hpy188III TCNNGA 3 cut(s) 26, 193, 563
Hpy8I GTNNAC 1 cut(s) 178
HpyAV CCTTC 1 cut(s) 32
HpyCH4III ACNGT 1 cut(s) 399
HpyCH4IV ACGT 1 cut(s) 492
HpyCH4V TGCA 9 cut(s) 124, 145, 359, 419, 537, 548, 599, 686, 718
HpyF10VI GCNNNNNNNGC 1 cut(s) 620
HpyF3I CTNAG 2 cut(s) 89, 219
HpySE526I ACGT 1 cut(s) 492
Hsp92II CATG 7 cut(s) 13, 29, 145, 474, 537, 681, 718
HspAI GCGC 1 cut(s) 612
KflI GGGWCCC 1 cut(s) 592
KroI GCCGGC 1 cut(s) 160
KroNI GCCGGC 1 cut(s) 162
Kzo9I GATC 3 cut(s) 28, 202, 565
LmnI GCTCC 1 cut(s) 460
LpnPI CCDG 5 cut(s) 50, 174, 345, 522, 609
Lsp1109I GCAGC 3 cut(s) 199, 343, 730
LweI GCATC 2 cut(s) 273, 640
MaeI CTAG 2 cut(s) 371, 609
MaeII ACGT 1 cut(s) 492
MaeIII GTNAC 2 cut(s) 253, 705
MalI GATC 3 cut(s) 30, 204, 567
MboI GATC 3 cut(s) 28, 202, 565
MboII GAAGA 4 cut(s) 445, 492, 518, 631
MhlI GDGCHC 2 cut(s) 277, 457
MluCI AATT 1 cut(s) 500
MlyI GAGTC 2 cut(s) 66, 195
MmeI TCCRAC 1 cut(s) 482
Mph1103I ATGCAT 3 cut(s) 126, 147, 539
MroNI GCCGGC 1 cut(s) 160
MroXI GAANNNNTTC 1 cut(s) 624
MspI CCGG 3 cut(s) 37, 161, 509
Mva1269I GAATGC 1 cut(s) 537
MwoI GCNNNNNNNGC 1 cut(s) 620
NaeI GCCGGC 1 cut(s) 162
NdeII GATC 3 cut(s) 28, 202, 565
NgoMIV GCCGGC 1 cut(s) 160
NlaIII CATG 7 cut(s) 13, 29, 145, 474, 537, 681, 718
NlaIV GGNNCC 7 cut(s) 237, 275, 276, 364, 456, 593, 594
NmuCI GTSAC 1 cut(s) 253
NsiI ATGCAT 3 cut(s) 126, 147, 539
NspI RCATGY 2 cut(s) 537, 718
NspV TTCGAA 1 cut(s) 292
PaeI GCATGC 1 cut(s) 537
PagI TCATGA 1 cut(s) 25
PceI AGGCCT 2 cut(s) 111, 607
PcsI WCGNNNNNNNCGW 1 cut(s) 236
PctI GAATGC 1 cut(s) 537
PdiI GCCGGC 1 cut(s) 162
PdmI GAANNNNTTC 1 cut(s) 624
PfeI GAWTC 3 cut(s) 227, 289, 467
PkrI GCNGC 5 cut(s) 137, 214, 358, 720, 723
PleI GAGTC 2 cut(s) 65, 194
PpsI GAGTC 2 cut(s) 65, 194
PpuMI RGGWCCY 1 cut(s) 592
Psp1406I AACGTT 1 cut(s) 492
Psp5II RGGWCCY 1 cut(s) 592
PspN4I GGNNCC 7 cut(s) 237, 275, 276, 364, 456, 593, 594
PspOMI GGGCCC 1 cut(s) 273
PspPI GGNCC 7 cut(s) 133, 236, 273, 274, 321, 363, 592
PspPPI RGGWCCY 1 cut(s) 592
PstI CTGCAG 1 cut(s) 361
RsaI GTAC 2 cut(s) 8, 81
RsaNI GTAC 2 cut(s) 7, 80
SatI GCNGC 5 cut(s) 136, 213, 357, 719, 722
Sau3AI GATC 3 cut(s) 28, 202, 565
Sau96I GGNCC 7 cut(s) 133, 236, 273, 274, 321, 363, 592
SchI GAGTC 2 cut(s) 66, 195
SduI GDGCHC 2 cut(s) 277, 457
SetI ASST 9 cut(s) 47, 95, 171, 266, 317, 429, 495, 520, 674
SfaNI GCATC 2 cut(s) 273, 640
SfcI CTRYAG 2 cut(s) 357, 428
SfuI TTCGAA 1 cut(s) 292
SinI GGWCC 2 cut(s) 363, 592
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
SphI GCATGC 1 cut(s) 537
Sse9I AATT 1 cut(s) 500
SseBI AGGCCT 2 cut(s) 111, 607
SsiI CCGC 1 cut(s) 136
SspMI CTAG 2 cut(s) 371, 609
StuI AGGCCT 2 cut(s) 111, 607
TaaI ACNGT 1 cut(s) 399
TaiI ACGT 1 cut(s) 495
TaqI TCGA 6 cut(s) 114, 129, 230, 292, 529, 564
TasI AATT 1 cut(s) 500
TatI WGTACW 1 cut(s) 6
TauI GCSGC 1 cut(s) 138
TfiI GAWTC 3 cut(s) 227, 289, 467
TscAI CASTG 2 cut(s) 93, 402
TseFI GTSAC 1 cut(s) 253
TseI GCWGC 4 cut(s) 212, 356, 718, 721
Tsp45I GTSAC 1 cut(s) 253
TspDTI ATGAA 4 cut(s) 14, 130, 459, 503
TspRI CASTG 2 cut(s) 93, 402
VpaK11BI GGWCC 2 cut(s) 363, 592
XapI RAATTY 1 cut(s) 500
XceI RCATGY 2 cut(s) 537, 718
XmnI GAANNNNTTC 1 cut(s) 624
XspI CTAG 2 cut(s) 371, 609
Zsp2I ATGCAT 3 cut(s) 126, 147, 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.