RchiOBHm_Chr7g0208401
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000445
Physical Location & Seq
Forward (+)
25882471 .. 25882797
327 bp
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UTR
Exon/CDS
Intron
PRQ18651

Sequence Viewer

Length: 327 bp
ATGGAGAGGTACAAGTTCACGAAGCAAGTAGATGCAGGTAGTTTTGGGCATGTTTATAAAGCCGTTGATAAGACGACCGGAGAGTTCGTCGCCATCAAAGAGTTGAAGCACTTGTGTCAGTCTTCATATCTAGAGCTACCAAAAGTCCAGGCACTGACTAGGTTGAAGCACCCAAACGTTGTCAACCTCAAGGGGATCCAAAGGCTACACGGTGTCGTCTTTTTCATCCTTGAATACATGCAAGGTATCCTGTTCCAACTCATTCACCTCAAGGGAAACGCCGGACAACTTTTCTCCTTAGCCAAAATTCGAGCCATGTGTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

108

Amino Acids

12.34

Weight (kDa)

9.74

Isoelectric Point (pI)

9.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 4 - 91 2.8e-13 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 5 - 82 3.7e-09 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000445)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19110 AT4G19110 AT4G19110 AT5G45430 AT5G45430
fragaria_vesca FvH4_2g16890 FvH4_5g19220 FvH4_5g19340 FvH4_5g19350 FvH4_5g19360 FvH4_5g23910 FvH4_7g27810
malus_domestica MD00G1001400.v1.1 MD04G1058900.v1.1 MD04G1059300.v1.1 MD04G1059500.v1.1 MD04G1059600.v1.1 MD04G1059800.v1.1 MD04G1061700.v1.1 MD04G1061800.v1.1 MD06G1014800.v1.1 MD06G1052900.v1.1 MD06G1055500.v1.1
prunus_persica Prupe.5G021300_v2.0.a1 Prupe.5G065900_v2.0.a1 Prupe.5G066500_v2.0.a1
pyrus_communis pycom06g04440
rosa_chinensis RchiOBHm_Chr1g0374681 RchiOBHm_Chr2g0120471 RchiOBHm_Chr2g0120711 RchiOBHm_Chr7g0203821 RchiOBHm_Chr7g0203861 RchiOBHm_Chr7g0208401 RchiOBHm_Chr7g0209011 RchiOBHm_Chr7g0213341
rosa_laevigata RLG00000001348 RLG00000002813 RLG00000003173 RLG00000003212 RLG00000003503 RLG00000022835 RLG00000026723 RLG00000035532
rosa_multiflora Rmu_co7960007.1_g000001 Rmu_co7963796.1_g000001 Rmu_co8519951.1_g000002 Rmu_sc0002038.1_g000009 Rmu_sc0004947.1_g000015 Rmu_sc0007490.1_g000005 Rmu_sc0011180.1_g000003 Rmu_sc0015273.1_g000013 Rmu_ssc0000190.1_g000014 Rmu_ssc0000372.1_g000031
rosa_roxburghii Rroxscaffold_3G00246080 Rroxscaffold_3G00249860 Rroxscaffold_3G00249870 Rroxscaffold_3G00253500 Rroxscaffold_4G00283340
rosa_rugosa Rorug01G0384300 Rorug07G0079000 Rorug07G0079000 Rorug07G0079000 Rorug07G0108300 Rorug07G0141200
rosa_samantha Rh1AG395700 Rh1BG359900 Rh1DG006600 Rh1DG390900 Rh2AG287100 Rh3BG335800 Rh3CG321100 Rh5DG116800 Rh7AG273000 Rh7BG207600 Rh7BG207800 Rh7BG237700 Rh7BG268400 Rh7CG221100 Rh7CG221300 Rh7CG254000 Rh7CG257900 Rh7CG292200 Rh7DG215700 Rh7DG215900 Rh7DG244500 Rh7DG249800 Rh7DG280700
rosa_wichuraiana Rw0G010370 Rw1G035090 Rw2G023020 Rw7G018200 Rw7G020570 Rw7G023690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 57
Acc36I ACCTGC 1 cut(s) 26
AclI AACGTT 1 cut(s) 177
AclWI GGATC 2 cut(s) 190, 203
AcsI RAATTY 1 cut(s) 306
AfaI GTAC 1 cut(s) 11
AgsI TTSAA 3 cut(s) 106, 166, 233
AjnI CCWGG 1 cut(s) 147
AluBI AGCT 1 cut(s) 136
AluI AGCT 1 cut(s) 136
AlwI GGATC 2 cut(s) 190, 203
AlwNI CAGNNNCTG 1 cut(s) 154
ApoI RAATTY 1 cut(s) 306
AsuHPI GGTGA 1 cut(s) 257
BamHI GGATCC 1 cut(s) 195
BbsI GAAGAC 1 cut(s) 114
BccI CCATC 1 cut(s) 101
BceAI ACGGC 1 cut(s) 47
BciT130I CCWGG 1 cut(s) 149
BciVI GTATCC 1 cut(s) 257
BfaI CTAG 3 cut(s) 131, 159, 325
BfuAI ACCTGC 1 cut(s) 26
BfuI GTATCC 1 cut(s) 257
Bme1390I CCNGG 1 cut(s) 149
BmiI GGNNCC 1 cut(s) 197
BmrFI CCNGG 1 cut(s) 149
BmsI GCATC 1 cut(s) 22
BpiI GAAGAC 1 cut(s) 114
Bpu10I CCTNAGC 1 cut(s) 298
BpuEI CTTGAG 2 cut(s) 173, 254
BsaWI WCCGGW 1 cut(s) 77
BsaXI ACNNNNNCTCC 2 cut(s) 72, 102
BseBI CCWGG 1 cut(s) 149
BseGI GGATG 1 cut(s) 225
Bsh1285I CGRYCG 1 cut(s) 78
BsiEI CGRYCG 1 cut(s) 78
BsiSI CCGG 2 cut(s) 78, 282
Bsp143I GATC 1 cut(s) 195
BspLI GGNNCC 1 cut(s) 197
BspMI ACCTGC 1 cut(s) 26
BspPI GGATC 2 cut(s) 190, 203
BssMI GATC 1 cut(s) 195
Bst2UI CCWGG 1 cut(s) 149
Bst4CI ACNGT 1 cut(s) 212
BstDEI CTNAG 1 cut(s) 298
BstF5I GGATG 1 cut(s) 225
BstKTI GATC 1 cut(s) 198
BstMBI GATC 1 cut(s) 195
BstMCI CGRYCG 1 cut(s) 78
BstNI CCWGG 1 cut(s) 149
BstNSI RCATGY 2 cut(s) 53, 241
BstSCI CCNGG 1 cut(s) 147
BstV2I GAAGAC 1 cut(s) 114
BstX2I RGATCY 1 cut(s) 195
BstYI RGATCY 1 cut(s) 195
BsuI GTATCC 1 cut(s) 257
BtsCI GGATG 1 cut(s) 225
BtsIMutI CAGTG 1 cut(s) 152
BveI ACCTGC 1 cut(s) 26
CaiI CAGNNNCTG 1 cut(s) 154
Csp6I GTAC 1 cut(s) 10
CviAII CATG 3 cut(s) 50, 238, 316
CviJI RGCY 5 cut(s) 62, 136, 205, 302, 314
CviKI_1 RGCY 5 cut(s) 62, 136, 205, 302, 314
CviQI GTAC 1 cut(s) 10
DdeI CTNAG 1 cut(s) 298
DpnI GATC 1 cut(s) 197
DpnII GATC 1 cut(s) 195
EcoRII CCWGG 1 cut(s) 147
FaeI CATG 3 cut(s) 53, 241, 319
FaiI YATR 5 cut(s) 51, 57, 127, 239, 317
FatI CATG 3 cut(s) 49, 237, 315
FokI GGATG 1 cut(s) 212
FspBI CTAG 3 cut(s) 131, 159, 325
HapII CCGG 2 cut(s) 78, 282
Hin1II CATG 3 cut(s) 53, 241, 319
HincII GTYRAC 1 cut(s) 184
HindII GTYRAC 1 cut(s) 184
HpaII CCGG 2 cut(s) 78, 282
HphI GGTGA 1 cut(s) 257
Hpy166II GTNNAC 2 cut(s) 18, 184
Hpy188III TCNNGA 2 cut(s) 19, 131
Hpy8I GTNNAC 2 cut(s) 18, 184
Hpy99I CGWCG 1 cut(s) 92
HpyCH4III ACNGT 1 cut(s) 212
HpyCH4IV ACGT 1 cut(s) 177
HpyCH4V TGCA 2 cut(s) 35, 241
HpyF3I CTNAG 1 cut(s) 298
HpySE526I ACGT 1 cut(s) 177
Hsp92II CATG 3 cut(s) 53, 241, 319
Kzo9I GATC 1 cut(s) 195
LpnPI CCDG 6 cut(s) 21, 91, 134, 161, 263, 295
LweI GCATC 1 cut(s) 22
MaeI CTAG 3 cut(s) 131, 159, 325
MaeII ACGT 1 cut(s) 177
MalI GATC 1 cut(s) 197
MboI GATC 1 cut(s) 195
MboII GAAGA 1 cut(s) 114
MflI RGATCY 1 cut(s) 195
MluCI AATT 1 cut(s) 306
MmeI TCCRAC 1 cut(s) 280
MnlI CCTC 2 cut(s) 197, 278
MspI CCGG 2 cut(s) 78, 282
MspR9I CCNGG 1 cut(s) 149
MvaI CCWGG 1 cut(s) 149
NdeII GATC 1 cut(s) 195
NlaIII CATG 3 cut(s) 53, 241, 319
NlaIV GGNNCC 1 cut(s) 197
NspI RCATGY 2 cut(s) 53, 241
PsiI TTATAA 1 cut(s) 57
Psp1406I AACGTT 1 cut(s) 177
Psp6I CCWGG 1 cut(s) 147
PspGI CCWGG 1 cut(s) 147
PspN4I GGNNCC 1 cut(s) 197
PstNI CAGNNNCTG 1 cut(s) 154
PsuI RGATCY 1 cut(s) 195
RsaI GTAC 1 cut(s) 11
RsaNI GTAC 1 cut(s) 10
Sau3AI GATC 1 cut(s) 195
ScrFI CCNGG 1 cut(s) 149
SetI ASST 8 cut(s) 11, 40, 138, 164, 180, 189, 247, 270
SfaNI GCATC 1 cut(s) 22
SmlI CTYRAG 2 cut(s) 188, 269
SmoI CTYRAG 2 cut(s) 188, 269
Sse9I AATT 1 cut(s) 306
SspMI CTAG 3 cut(s) 131, 159, 325
StyD4I CCNGG 1 cut(s) 147
TaaI ACNGT 1 cut(s) 212
TaiI ACGT 1 cut(s) 180
TaqI TCGA 1 cut(s) 310
TasI AATT 1 cut(s) 306
TscAI CASTG 1 cut(s) 159
TspDTI ATGAA 2 cut(s) 114, 214
TspRI CASTG 1 cut(s) 159
XapI RAATTY 1 cut(s) 306
XbaI TCTAGA 1 cut(s) 130
XceI RCATGY 2 cut(s) 53, 241
XspI CTAG 3 cut(s) 131, 159, 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.