Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000445

Physical Location & Seq

Genomic Coordinates Reverse (-)

28542482 .. 28545199

Gene Structure 2718 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG273000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGCTTTCACTGAATAAAGAAAGAGCTGCTTTGAGTTCCTCTGGAAGAATGGAGAGGTACAAGTTAATAAAGGAAGTTGGTGATGGAACATTTGGAACTGTGTGGCGTGCTATTAATAAGCAGACTGGTGAAGTTGTTGCAATCAAAAAAATGAAGAAAAGATATTATTCATGGGAGGAGTGCATAAGTCTTCGAGAAGTTAAGTCATTGCGTAGAATGAATCATCCAAATATTGTGAAGCTCAAGGAAGTCATCAGAGAACATGACATCTTGTACTTTGTGTTTGAATATATGGAGTGTAGTCTGTACCAGCTTATGAAAGATAAGGAAAAGCTTTTCCCTGAAGCGCAAGTCAGAAATTGGTGTTTTCAAGTTTTTCAAGGCCTTGCTTACATGCATCAGCGTGGATATTTTCATCGTGACCTTAAGCCAGAGAACTTGTTGGTTACCAAAGATTTAATCAAAATTGCTGACTTTGGTCTTGCTCGGGAAATTGAATCCCAACCACCGTACACTGAATACGTGTCGACACGCTGGTACCGAGCTCCTGAAGTACTGCTTCAGTCATACCTGTATAGCTCTAAAGTTGATATGTGGGCGATGGGTGCAATCATGGCCGAGTTGTTTAGTCTTCGCCCTCTTTTTCCGGGTGTTAGTGAAGCAGATGAGATACACAAAATTTGCAGTGTGATTGGCACTCCAAACAAGGATTCATGGGCAGATGGGCTTCGTCTTGCAAGGGATATCAACTACCAATTTCCACAGTTTGCTGGTGTTCATCTTTCTTCTCTGATTCCATCAGCTAGTGATCATGCAATTAGCCTCATTAGAGTAAGTCGTATTTTGTATTTGATTTGTACATGGGTTAGATTTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

292

Amino Acids

34.23

Weight (kDa)

9.13

Isoelectric Point (pI)

43.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	20 - 236	1.3e-66	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	21 - 221	6.4e-41	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19110 AT4G19110 AT4G19110 AT5G45430 AT5G45430
fragaria_vesca	FvH4_2g16890 FvH4_5g19220 FvH4_5g19340 FvH4_5g19350 FvH4_5g19360 FvH4_5g23910 FvH4_7g27810
malus_domestica	MD00G1001400.v1.1 MD04G1058900.v1.1 MD04G1059300.v1.1 MD04G1059500.v1.1 MD04G1059600.v1.1 MD04G1059800.v1.1 MD04G1061700.v1.1 MD04G1061800.v1.1 MD06G1014800.v1.1 MD06G1052900.v1.1 MD06G1055500.v1.1
prunus_persica	Prupe.5G021300_v2.0.a1 Prupe.5G065900_v2.0.a1 Prupe.5G066500_v2.0.a1
pyrus_communis	pycom06g04440
rosa_chinensis	RchiOBHm_Chr1g0374681 RchiOBHm_Chr2g0120471 RchiOBHm_Chr2g0120711 RchiOBHm_Chr7g0203821 RchiOBHm_Chr7g0203861 RchiOBHm_Chr7g0208401 RchiOBHm_Chr7g0209011 RchiOBHm_Chr7g0213341
rosa_laevigata	RLG00000001348 RLG00000002813 RLG00000003173 RLG00000003212 RLG00000003503 RLG00000022835 RLG00000026723 RLG00000035532
rosa_multiflora	Rmu_co7960007.1_g000001 Rmu_co7963796.1_g000001 Rmu_co8519951.1_g000002 Rmu_sc0002038.1_g000009 Rmu_sc0004947.1_g000015 Rmu_sc0007490.1_g000005 Rmu_sc0011180.1_g000003 Rmu_sc0015273.1_g000013 Rmu_ssc0000190.1_g000014 Rmu_ssc0000372.1_g000031
rosa_roxburghii	Rroxscaffold_3G00246080 Rroxscaffold_3G00249860 Rroxscaffold_3G00249870 Rroxscaffold_3G00253500 Rroxscaffold_4G00283340
rosa_rugosa	Rorug01G0384300 Rorug07G0079000 Rorug07G0079000 Rorug07G0079000 Rorug07G0108300 Rorug07G0141200
rosa_samantha	Rh1AG395700 Rh1BG359900 Rh1DG006600 Rh1DG390900 Rh2AG287100 Rh3BG335800 Rh3CG321100 Rh5DG116800 Rh7AG273000 Rh7BG207600 Rh7BG207800 Rh7BG237700 Rh7BG268400 Rh7CG221100 Rh7CG221300 Rh7CG254000 Rh7CG257900 Rh7CG292200 Rh7DG215700 Rh7DG215900 Rh7DG244500 Rh7DG249800 Rh7DG280700
rosa_wichuraiana	Rw0G010370 Rw1G035090 Rw2G023020 Rw7G018200 Rw7G020570 Rw7G023690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	537
AccB1I	GGYRCC	1 cut(s)	537
AccI	GTMKAC	1 cut(s)	527
AcoI	YGGCCR	1 cut(s)	615
AcsI	RAATTY	1 cut(s)	678
AcuI	CTGAAG	3 cut(s)	363, 545, 570
AfaI	GTAC	7 cut(s)	59, 275, 308, 512, 539, 555, 859
AflII	CTTAAG	1 cut(s)	425
AflIII	ACRYGT	1 cut(s)	522
AgsI	TTSAA	4 cut(s)	287, 371, 380, 497
AjuI	GAANNNNNNNTTGG	2 cut(s)	694, 726
AluBI	AGCT	7 cut(s)	26, 241, 313, 334, 545, 579, 803
AluI	AGCT	7 cut(s)	26, 241, 313, 334, 545, 579, 803
Alw21I	GWGCWC	1 cut(s)	547
Ama87I	CYCGRG	1 cut(s)	486
AoxI	GGCC	2 cut(s)	382, 615
ApeKI	GCWGC	1 cut(s)	26
ApoI	RAATTY	1 cut(s)	678
AseI	ATTAAT	1 cut(s)	114
Asp718I	GGTACC	1 cut(s)	537
AspLEI	GCGC	1 cut(s)	349
AsuC2I	CCSGG	1 cut(s)	648
AsuHPI	GGTGA	2 cut(s)	92, 140
AvaI	CYCGRG	1 cut(s)	486
BaeI	ACNNNNGTAYC	2 cut(s)	521, 554
BanI	GGYRCC	1 cut(s)	537
BanII	GRGCYC	1 cut(s)	547
BbsI	GAAGAC	2 cut(s)	182, 623
Bbv12I	GWGCWC	1 cut(s)	547
BbvI	GCAGC	1 cut(s)	13
BccI	CCATC	4 cut(s)	77, 595, 716, 805
BclI	TGATCA	1 cut(s)	808
BcnI	CCSGG	1 cut(s)	648
BfaI	CTAG	1 cut(s)	804
BfrI	CTTAAG	1 cut(s)	425
BisI	GCNGC	1 cut(s)	27
BlsI	GCNGC	1 cut(s)	28
BmcAI	AGTACT	1 cut(s)	555
Bme1390I	CCNGG	1 cut(s)	648
BmeT110I	CYCGRG	1 cut(s)	486
BmiI	GGNNCC	1 cut(s)	539
BmrFI	CCNGG	1 cut(s)	648
BmsI	GCATC	1 cut(s)	406
BoxI	GACNNNNGTC	1 cut(s)	477
BpiI	GAAGAC	2 cut(s)	182, 623
BpuEI	CTTGAG	1 cut(s)	227
BpuMI	CCSGG	1 cut(s)	648
BsaAI	YACGTR	1 cut(s)	523
Bse1I	ACTGG	1 cut(s)	130
Bse3DI	GCAATG	1 cut(s)	206
BseGI	GGATG	1 cut(s)	223
BseMI	GCAATG	1 cut(s)	206
BseNI	ACTGG	1 cut(s)	130
BseRI	GAGGAG	1 cut(s)	191
BseXI	GCAGC	1 cut(s)	13
BshFI	GGCC	2 cut(s)	384, 617
BshNI	GGYRCC	1 cut(s)	537
BsiHKAI	GWGCWC	1 cut(s)	547
BsiHKCI	CYCGRG	1 cut(s)	486
BsiSI	CCGG	1 cut(s)	647
BsnI	GGCC	2 cut(s)	384, 617
BsoBI	CYCGRG	1 cut(s)	486
Bsp1286I	GDGCHC	1 cut(s)	547
Bsp1407I	TGTACA	1 cut(s)	857
Bsp143I	GATC	1 cut(s)	808
BspANI	GGCC	2 cut(s)	384, 617
BspLI	GGNNCC	1 cut(s)	539
BspT107I	GGYRCC	1 cut(s)	537
BspTI	CTTAAG	1 cut(s)	425
BsrDI	GCAATG	1 cut(s)	206
BsrGI	TGTACA	1 cut(s)	857
BsrI	ACTGG	1 cut(s)	130
BssMI	GATC	1 cut(s)	808
Bst4CI	ACNGT	3 cut(s)	100, 510, 765
BstAFI	CTTAAG	1 cut(s)	425
BstAUI	TGTACA	1 cut(s)	857
BstBAI	YACGTR	1 cut(s)	523
BstC8I	GCNNGC	1 cut(s)	108
BstEII	GGTNACC	1 cut(s)	445
BstF5I	GGATG	1 cut(s)	223
BstHHI	GCGC	1 cut(s)	349
BstKTI	GATC	1 cut(s)	811
BstMBI	GATC	1 cut(s)	808
BstMWI	GCNNNNNNNGC	2 cut(s)	605, 614
BstNSI	RCATGY	1 cut(s)	397
BstPAI	GACNNNNGTC	1 cut(s)	477
BstPI	GGTNACC	1 cut(s)	445
BstSCI	CCNGG	1 cut(s)	646
BstV1I	GCAGC	1 cut(s)	13
BstV2I	GAAGAC	2 cut(s)	182, 623
BsuRI	GGCC	2 cut(s)	384, 617
BtgZI	GCGATG	1 cut(s)	614
BtsCI	GGATG	1 cut(s)	223
BtsI	GCAGTG	1 cut(s)	691
BtsIMutI	CAGTG	3 cut(s)	8, 513, 691
Cac8I	GCNNGC	1 cut(s)	108
CfoI	GCGC	1 cut(s)	349
Csp6I	GTAC	7 cut(s)	58, 274, 307, 511, 538, 554, 858
CviAII	CATG	7 cut(s)	171, 263, 394, 613, 714, 812, 861
CviQI	GTAC	7 cut(s)	58, 274, 307, 511, 538, 554, 858
DpnI	GATC	1 cut(s)	810
DpnII	GATC	1 cut(s)	808
EaeI	YGGCCR	1 cut(s)	615
Ecl136II	GAGCTC	1 cut(s)	545
Eco147I	AGGCCT	1 cut(s)	384
Eco24I	GRGCYC	1 cut(s)	547
Eco32I	GATATC	1 cut(s)	745
Eco53kI	GAGCTC	1 cut(s)	545
Eco57I	CTGAAG	3 cut(s)	363, 545, 570
Eco88I	CYCGRG	1 cut(s)	486
Eco91I	GGTNACC	1 cut(s)	445
EcoICRI	GAGCTC	1 cut(s)	545
EcoO65I	GGTNACC	1 cut(s)	445
EcoRV	GATATC	1 cut(s)	745
EcoT22I	ATGCAT	1 cut(s)	399
EcoT38I	GRGCYC	1 cut(s)	547
FaeI	CATG	7 cut(s)	174, 266, 397, 616, 717, 815, 864
FalI	AAGNNNNNCTT	4 cut(s)	13, 45, 543, 575
FatI	CATG	7 cut(s)	170, 262, 393, 612, 713, 811, 860
FbaI	TGATCA	1 cut(s)	808
FblI	GTMKAC	1 cut(s)	527
Fnu4HI	GCNGC	1 cut(s)	27
FokI	GGATG	1 cut(s)	210
FriOI	GRGCYC	1 cut(s)	547
Fsp4HI	GCNGC	1 cut(s)	27
FspBI	CTAG	1 cut(s)	804
GlaI	GCGC	1 cut(s)	348
GluI	GCNGC	1 cut(s)	27
HaeIII	GGCC	2 cut(s)	384, 617
HapII	CCGG	1 cut(s)	647
HhaI	GCGC	1 cut(s)	349
Hin1II	CATG	7 cut(s)	174, 266, 397, 616, 717, 815, 864
Hin6I	GCGC	1 cut(s)	347
HinP1I	GCGC	1 cut(s)	347
HincII	GTYRAC	1 cut(s)	528
HindII	GTYRAC	1 cut(s)	528
HindIII	AAGCTT	1 cut(s)	332
HinfI	GANTC	4 cut(s)	220, 497, 710, 793
HpaII	CCGG	1 cut(s)	647
HphI	GGTGA	2 cut(s)	92, 140
Hpy166II	GTNNAC	2 cut(s)	513, 528
Hpy188I	TCNGA	3 cut(s)	257, 356, 792
Hpy188III	TCNNGA	5 cut(s)	42, 194, 419, 488, 548
Hpy8I	GTNNAC	2 cut(s)	513, 528
HpyCH4III	ACNGT	3 cut(s)	100, 510, 765
HpyCH4IV	ACGT	1 cut(s)	522
HpyCH4V	TGCA	7 cut(s)	140, 183, 397, 608, 684, 737, 815
HpyF10VI	GCNNNNNNNGC	2 cut(s)	605, 614
HpySE526I	ACGT	1 cut(s)	522
Hsp92II	CATG	7 cut(s)	174, 266, 397, 616, 717, 815, 864
HspAI	GCGC	1 cut(s)	347
KpnI	GGTACC	1 cut(s)	541
Ksp22I	TGATCA	1 cut(s)	808
Kzo9I	GATC	1 cut(s)	808
LmnI	GCTCC	1 cut(s)	550
Lsp1109I	GCAGC	1 cut(s)	13
LweI	GCATC	1 cut(s)	406
MaeI	CTAG	1 cut(s)	804
MaeII	ACGT	1 cut(s)	522
MaeIII	GTNAC	2 cut(s)	419, 445
MalI	GATC	1 cut(s)	810
MboI	GATC	1 cut(s)	808
MboII	GAAGA	5 cut(s)	57, 166, 182, 623, 777
MhlI	GDGCHC	1 cut(s)	547
MluCI	AATT	6 cut(s)	358, 465, 492, 678, 755, 816
MnlI	CCTC	5 cut(s)	48, 49, 169, 648, 833
Mph1103I	ATGCAT	1 cut(s)	399
MseI	TTAA	5 cut(s)	65, 114, 201, 426, 458
MslI	CAYNNNNRTG	1 cut(s)	402
MspCI	CTTAAG	1 cut(s)	425
MspI	CCGG	1 cut(s)	647
MspR9I	CCNGG	1 cut(s)	648
MwoI	GCNNNNNNNGC	2 cut(s)	605, 614
NciI	CCSGG	1 cut(s)	648
NdeII	GATC	1 cut(s)	808
NlaIII	CATG	7 cut(s)	174, 266, 397, 616, 717, 815, 864
NlaIV	GGNNCC	1 cut(s)	539
NmeAIII	GCCGAG	1 cut(s)	643
NmuCI	GTSAC	1 cut(s)	419
NsiI	ATGCAT	1 cut(s)	399
NspI	RCATGY	1 cut(s)	397
PceI	AGGCCT	1 cut(s)	384
PcsI	WCGNNNNNNNCGW	1 cut(s)	538
PfeI	GAWTC	4 cut(s)	220, 497, 710, 793
PkrI	GCNGC	1 cut(s)	28
Ppu21I	YACGTR	1 cut(s)	523
PshAI	GACNNNNGTC	1 cut(s)	477
PshBI	ATTAAT	1 cut(s)	114
Psp124BI	GAGCTC	1 cut(s)	547
PspEI	GGTNACC	1 cut(s)	445
PspN4I	GGNNCC	1 cut(s)	539
RsaI	GTAC	7 cut(s)	59, 275, 308, 512, 539, 555, 859
RsaNI	GTAC	7 cut(s)	58, 274, 307, 511, 538, 554, 858
RseI	CAYNNNNRTG	1 cut(s)	402
SacI	GAGCTC	1 cut(s)	547
SalI	GTCGAC	1 cut(s)	526
SaqAI	TTAA	5 cut(s)	65, 114, 201, 426, 458
SatI	GCNGC	1 cut(s)	27
Sau3AI	GATC	1 cut(s)	808
ScaI	AGTACT	1 cut(s)	555
ScrFI	CCNGG	1 cut(s)	648
SduI	GDGCHC	1 cut(s)	547
SfaNI	GCATC	1 cut(s)	406
SmiMI	CAYNNNNRTG	1 cut(s)	402
SmlI	CTYRAG	2 cut(s)	242, 425
SmoI	CTYRAG	2 cut(s)	242, 425
Sse9I	AATT	6 cut(s)	358, 465, 492, 678, 755, 816
SseBI	AGGCCT	1 cut(s)	384
SspI	AATATT	1 cut(s)	232
SspMI	CTAG	1 cut(s)	804
SstI	GAGCTC	1 cut(s)	547
StuI	AGGCCT	1 cut(s)	384
StyD4I	CCNGG	1 cut(s)	646
TaaI	ACNGT	3 cut(s)	100, 510, 765
TaiI	ACGT	1 cut(s)	525
TaqI	TCGA	2 cut(s)	193, 527
TasI	AATT	6 cut(s)	358, 465, 492, 678, 755, 816
TatI	WGTACW	3 cut(s)	273, 553, 857
TfiI	GAWTC	4 cut(s)	220, 497, 710, 793
Tru1I	TTAA	5 cut(s)	65, 114, 201, 426, 458
Tru9I	TTAA	5 cut(s)	65, 114, 201, 426, 458
TscAI	CASTG	3 cut(s)	15, 520, 691
TseFI	GTSAC	1 cut(s)	419
TseI	GCWGC	1 cut(s)	26
Tsp45I	GTSAC	1 cut(s)	419
TspDTI	ATGAA	7 cut(s)	159, 167, 233, 332, 404, 702, 767
TspRI	CASTG	3 cut(s)	15, 520, 691
Vha464I	CTTAAG	1 cut(s)	425
VspI	ATTAAT	1 cut(s)	114
XapI	RAATTY	1 cut(s)	678
XceI	RCATGY	1 cut(s)	397
XmiI	GTMKAC	1 cut(s)	527
XspI	CTAG	1 cut(s)	804
ZrmI	AGTACT	1 cut(s)	555
Zsp2I	ATGCAT	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.