RLG00000035532
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000445
Physical Location & Seq
Forward (+)
68072320 .. 68073303
984 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035532

Sequence Viewer

Length: 984 bp
ATGGATAGATACGAGATAGTAAGGCTGGTTGGTGAGGGGAGTTTTGGGTGGGTGTATCAGGCCATCGACAACGACACCCGTCAGTTTGTGGCGATCAAACAGCTGAAGCCAGACTGCGATCAGTCGGCATACTTATCGGAAGTCCGAGCTCTCACTAGGTTGGAGCACCCCAATATAGTGAGCCTCAAGGGCGTTGAATACCAAGACGACGACGTCTTCTTTGTTTTTGAGTACATGGAGGGTAGCCTTTGTGATCTTATTAATGAGAGGCTGAGCAGGAGAATCTCTTTCTCGGAGGCCGAAATCCGATCATTGAGCCGTCAGGTGTTGCAAGGCCTTGAATTCATGCATCACCAGTGCGGCTTCATGCACCGGGATCTGAAGCCGGAGAATCTTTTGGTGACCAATGGCGTCATCAAGATTTCGGATCTGGGTACTGCTACGGAGATCGACTGCGGCGACCAATTGCATCATCATTACGTCACCACAAGGTGGTATAGAGCCCCGGAGATGCTGCTTCGAGCGTTCGTGAAAGACGAGAGGCTTCGACCCTTTGAGTACGGTGAGAAAGTAGACATGTGGGCTATGGGGATGATCATAGCAGAGCTGTTTCTCATGCGGCCTCTCTTCGAGGGTGACGATTCGCCCAATCAGCTTTACAAGATATGCGAAGTCATGGGAGCTCCAACTCGGGATTCATGGAGGGACGGGAGGTTTTTGGCAGCATTTATGCCGGAGAATGGTGTGGGTCTTCGAGCGTTGATGCCATATGCCAGTGAATCGGCTATCGATCTCATAGCGTCTCTTTGTTCTTGGGACCCTTCTAAAAGGCCTACTGCTAGGGAAGCTCTCCAGCATCCCTTCTTCAAGGGAGGGCAGAATGTTGACGCTCCTCCTGGGTTCTCATATTGCACTCATACAAGGGACAATGTAGTTCCAGAGATGACAGAGTTATCAACCATGCAGCCAATACTAGGAGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

328

Amino Acids

37.45

Weight (kDa)

5.13

Isoelectric Point (pI)

42.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 4 - 289 3e-67 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 6 - 205 1e-29 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000445)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19110 AT4G19110 AT4G19110 AT5G45430 AT5G45430
fragaria_vesca FvH4_2g16890 FvH4_5g19220 FvH4_5g19340 FvH4_5g19350 FvH4_5g19360 FvH4_5g23910 FvH4_7g27810
malus_domestica MD00G1001400.v1.1 MD04G1058900.v1.1 MD04G1059300.v1.1 MD04G1059500.v1.1 MD04G1059600.v1.1 MD04G1059800.v1.1 MD04G1061700.v1.1 MD04G1061800.v1.1 MD06G1014800.v1.1 MD06G1052900.v1.1 MD06G1055500.v1.1
prunus_persica Prupe.5G021300_v2.0.a1 Prupe.5G065900_v2.0.a1 Prupe.5G066500_v2.0.a1
pyrus_communis pycom06g04440
rosa_chinensis RchiOBHm_Chr1g0374681 RchiOBHm_Chr2g0120471 RchiOBHm_Chr2g0120711 RchiOBHm_Chr7g0203821 RchiOBHm_Chr7g0203861 RchiOBHm_Chr7g0208401 RchiOBHm_Chr7g0209011 RchiOBHm_Chr7g0213341
rosa_laevigata RLG00000001348 RLG00000002813 RLG00000003173 RLG00000003212 RLG00000003503 RLG00000022835 RLG00000026723 RLG00000035532
rosa_multiflora Rmu_co7960007.1_g000001 Rmu_co7963796.1_g000001 Rmu_co8519951.1_g000002 Rmu_sc0002038.1_g000009 Rmu_sc0004947.1_g000015 Rmu_sc0007490.1_g000005 Rmu_sc0011180.1_g000003 Rmu_sc0015273.1_g000013 Rmu_ssc0000190.1_g000014 Rmu_ssc0000372.1_g000031
rosa_roxburghii Rroxscaffold_3G00246080 Rroxscaffold_3G00249860 Rroxscaffold_3G00249870 Rroxscaffold_3G00253500 Rroxscaffold_4G00283340
rosa_rugosa Rorug01G0384300 Rorug07G0079000 Rorug07G0079000 Rorug07G0079000 Rorug07G0108300 Rorug07G0141200
rosa_samantha Rh1AG395700 Rh1BG359900 Rh1DG006600 Rh1DG390900 Rh2AG287100 Rh3BG335800 Rh3CG321100 Rh5DG116800 Rh7AG273000 Rh7BG207600 Rh7BG207800 Rh7BG237700 Rh7BG268400 Rh7CG221100 Rh7CG221300 Rh7CG254000 Rh7CG257900 Rh7CG292200 Rh7DG215700 Rh7DG215900 Rh7DG244500 Rh7DG249800 Rh7DG280700
rosa_wichuraiana Rw0G010370 Rw1G035090 Rw2G023020 Rw7G018200 Rw7G020570 Rw7G023690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 212
AatII GACGTC 1 cut(s) 216
AccB7I CCANNNNNTGG 1 cut(s) 492
AccI GTMKAC 1 cut(s) 573
AciI CCGC 3 cut(s) 360, 456, 619
AclWI GGATC 2 cut(s) 384, 435
AcsI RAATTY 1 cut(s) 341
AcuI CTGAAG 2 cut(s) 125, 401
AcyI GRCGYC 2 cut(s) 213, 411
AdeI CACNNNGTG 1 cut(s) 492
AfaI GTAC 3 cut(s) 233, 436, 560
AfiI CCNNNNNNNGG 3 cut(s) 492, 740, 974
AflIII ACRYGT 1 cut(s) 576
AgsI TTSAA 3 cut(s) 197, 341, 868
AjnI CCWGG 1 cut(s) 895
AjuI GAANNNNNNNTTGG 2 cut(s) 679, 711
AluBI AGCT 6 cut(s) 103, 149, 607, 655, 683, 848
AluI AGCT 6 cut(s) 103, 149, 607, 655, 683, 848
Alw21I GWGCWC 3 cut(s) 151, 168, 685
Alw26I GTCTC 1 cut(s) 807
AlwI GGATC 2 cut(s) 384, 435
Ama87I CYCGRG 1 cut(s) 690
AoxI GGCC 5 cut(s) 60, 297, 334, 620, 830
ApeKI GCWGC 3 cut(s) 514, 722, 964
ApoI RAATTY 1 cut(s) 341
ArsI GACNNNNNNTTYG 2 cut(s) 203, 235
AseI ATTAAT 1 cut(s) 261
AspS9I GGNCC 1 cut(s) 817
AsuC2I CCSGG 2 cut(s) 374, 506
AsuHPI GGTGA 6 cut(s) 44, 344, 412, 475, 575, 647
AvaI CYCGRG 1 cut(s) 690
AvaII GGWCC 1 cut(s) 817
BanII GRGCYC 3 cut(s) 151, 505, 685
BbsI GAAGAC 2 cut(s) 208, 743
Bbv12I GWGCWC 3 cut(s) 151, 168, 685
BbvI GCAGC 3 cut(s) 501, 734, 976
BccI CCATC 1 cut(s) 71
BceAI ACGGC 1 cut(s) 303
BcgI CGANNNNNNTGC 2 cut(s) 117, 151
BciT130I CCWGG 1 cut(s) 897
BclI TGATCA 1 cut(s) 594
BcnI CCSGG 2 cut(s) 374, 506
BcoDI GTCTC 1 cut(s) 807
BfaI CTAG 3 cut(s) 156, 840, 974
BglI GCCNNNNNGGC 1 cut(s) 189
BisI GCNGC 6 cut(s) 361, 457, 515, 620, 723, 965
BlpI GCTNAGC 1 cut(s) 272
BlsI GCNGC 6 cut(s) 362, 458, 516, 621, 724, 966
Bme1390I CCNGG 3 cut(s) 374, 506, 897
Bme18I GGWCC 1 cut(s) 817
BmeT110I CYCGRG 1 cut(s) 690
BmgT120I GGNCC 1 cut(s) 817
BmiI GGNNCC 3 cut(s) 818, 819, 979
BmrFI CCNGG 3 cut(s) 374, 506, 897
BmsI GCATC 5 cut(s) 358, 478, 501, 753, 865
BoxI GACNNNNGTC 1 cut(s) 78
BpiI GAAGAC 2 cut(s) 208, 743
BpmI CTGGAG 1 cut(s) 836
Bpu1102I GCTNAGC 1 cut(s) 272
BpuEI CTTGAG 1 cut(s) 170
BpuMI CCSGG 2 cut(s) 374, 506
Bsa29I ATCGAT 1 cut(s) 789
BsaHI GRCGYC 2 cut(s) 213, 411
BsaJI CCNNGG 2 cut(s) 504, 896
Bsc4I CCNNNNNNNGG 3 cut(s) 492, 740, 974
Bse1I ACTGG 2 cut(s) 355, 774
BseBI CCWGG 1 cut(s) 897
BseCI ATCGAT 1 cut(s) 789
BseDI CCNNGG 2 cut(s) 504, 896
BseGI GGATG 2 cut(s) 597, 856
BseLI CCNNNNNNNGG 3 cut(s) 492, 740, 974
BseMII CTCAG 1 cut(s) 263
BseNI ACTGG 2 cut(s) 355, 774
BseRI GAGGAG 1 cut(s) 882
BseXI GCAGC 3 cut(s) 501, 734, 976
BshFI GGCC 5 cut(s) 62, 299, 336, 622, 832
BshVI ATCGAT 1 cut(s) 789
BsiHKAI GWGCWC 3 cut(s) 151, 168, 685
BsiHKCI CYCGRG 1 cut(s) 690
BsiSI CCGG 4 cut(s) 373, 386, 506, 734
BslFI GGGAC 3 cut(s) 719, 830, 938
BslI CCNNNNNNNGG 3 cut(s) 492, 740, 974
BsmAI GTCTC 1 cut(s) 807
BsmBI CGTCTC 1 cut(s) 807
BsmFI GGGAC 3 cut(s) 719, 830, 938
BsnI GGCC 5 cut(s) 62, 299, 336, 622, 832
BsoBI CYCGRG 1 cut(s) 690
Bsp1286I GDGCHC 4 cut(s) 151, 168, 505, 685
Bsp143I GATC 9 cut(s) 93, 118, 253, 308, 376, 427, 447, 594, 790
Bsp1720I GCTNAGC 1 cut(s) 272
BspACI CCGC 3 cut(s) 360, 456, 619
BspANI GGCC 5 cut(s) 62, 299, 336, 622, 832
BspCNI CTCAG 1 cut(s) 264
BspDI ATCGAT 1 cut(s) 789
BspLI GGNNCC 3 cut(s) 818, 819, 979
BspPI GGATC 2 cut(s) 384, 435
BsrI ACTGG 2 cut(s) 355, 774
BssECI CCNNGG 2 cut(s) 504, 896
BssMI GATC 9 cut(s) 93, 118, 253, 308, 376, 427, 447, 594, 790
BssNI GRCGYC 2 cut(s) 213, 411
Bst2UI CCWGG 1 cut(s) 897
Bst4CI ACNGT 1 cut(s) 563
Bst6I CTCTTC 1 cut(s) 632
BstACI GRCGYC 2 cut(s) 213, 411
BstDEI CTNAG 1 cut(s) 272
BstEII GGTNACC 1 cut(s) 400
BstF5I GGATG 2 cut(s) 597, 856
BstKTI GATC 9 cut(s) 96, 121, 256, 311, 379, 430, 450, 597, 793
BstMAI GTCTC 1 cut(s) 807
BstMBI GATC 9 cut(s) 93, 118, 253, 308, 376, 427, 447, 594, 790
BstMWI GCNNNNNNNGC 3 cut(s) 189, 652, 845
BstNI CCWGG 1 cut(s) 897
BstNSI RCATGY 1 cut(s) 580
BstPAI GACNNNNGTC 1 cut(s) 78
BstPI GGTNACC 1 cut(s) 400
BstSCI CCNGG 3 cut(s) 372, 504, 895
BstV1I GCAGC 3 cut(s) 501, 734, 976
BstV2I GAAGAC 2 cut(s) 208, 743
BstX2I RGATCY 2 cut(s) 376, 427
BstYI RGATCY 2 cut(s) 376, 427
Bsu15I ATCGAT 1 cut(s) 789
BsuRI GGCC 5 cut(s) 62, 299, 336, 622, 832
BsuTUI ATCGAT 1 cut(s) 789
BtsCI GGATG 2 cut(s) 597, 856
BtsIMutI CAGTG 2 cut(s) 362, 781
Cfr13I GGNCC 1 cut(s) 817
ClaI ATCGAT 1 cut(s) 789
CseI GACGC 3 cut(s) 400, 789, 896
Csp6I GTAC 3 cut(s) 232, 435, 559
CviAII CATG 8 cut(s) 235, 346, 367, 577, 616, 676, 699, 961
CviQI GTAC 3 cut(s) 232, 435, 559
DdeI CTNAG 1 cut(s) 272
DpnI GATC 9 cut(s) 95, 120, 255, 310, 378, 429, 449, 596, 792
DpnII GATC 9 cut(s) 93, 118, 253, 308, 376, 427, 447, 594, 790
DraIII CACNNNGTG 1 cut(s) 492
DrdI GACNNNNNNGTC 1 cut(s) 212
DseDI GACNNNNNNGTC 1 cut(s) 212
Eam1104I CTCTTC 1 cut(s) 632
EarI CTCTTC 1 cut(s) 632
Ecl136II GAGCTC 2 cut(s) 149, 683
Eco147I AGGCCT 2 cut(s) 336, 832
Eco24I GRGCYC 3 cut(s) 151, 505, 685
Eco47I GGWCC 1 cut(s) 817
Eco53kI GAGCTC 2 cut(s) 149, 683
Eco57I CTGAAG 2 cut(s) 125, 401
Eco88I CYCGRG 1 cut(s) 690
Eco91I GGTNACC 1 cut(s) 400
EcoICRI GAGCTC 2 cut(s) 149, 683
EcoO109I RGGNCCY 1 cut(s) 817
EcoO65I GGTNACC 1 cut(s) 400
EcoRI GAATTC 1 cut(s) 341
EcoRII CCWGG 1 cut(s) 895
EcoT22I ATGCAT 1 cut(s) 351
EcoT38I GRGCYC 3 cut(s) 151, 505, 685
Esp3I CGTCTC 1 cut(s) 807
FaeI CATG 8 cut(s) 238, 349, 370, 580, 619, 679, 702, 964
FaqI GGGAC 3 cut(s) 719, 830, 938
FatI CATG 8 cut(s) 234, 345, 366, 576, 615, 675, 698, 960
FauNDI CATATG 1 cut(s) 769
FbaI TGATCA 1 cut(s) 594
FblI GTMKAC 1 cut(s) 573
Fnu4HI GCNGC 6 cut(s) 361, 457, 515, 620, 723, 965
FokI GGATG 2 cut(s) 604, 843
FriOI GRGCYC 3 cut(s) 151, 505, 685
Fsp4HI GCNGC 6 cut(s) 361, 457, 515, 620, 723, 965
FspBI CTAG 3 cut(s) 156, 840, 974
GluI GCNGC 6 cut(s) 361, 457, 515, 620, 723, 965
GsuI CTGGAG 1 cut(s) 836
HaeIII GGCC 5 cut(s) 62, 299, 336, 622, 832
HapII CCGG 4 cut(s) 373, 386, 506, 734
HgaI GACGC 3 cut(s) 400, 789, 896
Hin1I GRCGYC 2 cut(s) 213, 411
Hin1II CATG 8 cut(s) 238, 349, 370, 580, 619, 679, 702, 964
HincII GTYRAC 1 cut(s) 886
HindII GTYRAC 1 cut(s) 886
HinfI GANTC 5 cut(s) 282, 391, 641, 695, 779
HpaII CCGG 4 cut(s) 373, 386, 506, 734
HphI GGTGA 6 cut(s) 44, 344, 412, 475, 575, 647
Hpy166II GTNNAC 2 cut(s) 574, 886
Hpy188I TCNGA 6 cut(s) 139, 146, 295, 308, 381, 427
Hpy188III TCNNGA 4 cut(s) 418, 529, 692, 938
Hpy8I GTNNAC 2 cut(s) 574, 886
Hpy99I CGWCG 2 cut(s) 212, 215
HpyAV CCTTC 2 cut(s) 831, 871
HpyCH4III ACNGT 1 cut(s) 563
HpyCH4IV ACGT 2 cut(s) 213, 480
HpyCH4V TGCA 6 cut(s) 331, 349, 370, 469, 912, 964
HpyF10VI GCNNNNNNNGC 3 cut(s) 189, 652, 845
HpyF3I CTNAG 1 cut(s) 272
HpySE526I ACGT 2 cut(s) 213, 480
Hsp92I GRCGYC 2 cut(s) 213, 411
Hsp92II CATG 8 cut(s) 238, 349, 370, 580, 619, 679, 702, 964
KflI GGGWCCC 1 cut(s) 817
Ksp22I TGATCA 1 cut(s) 594
Kzo9I GATC 9 cut(s) 93, 118, 253, 308, 376, 427, 447, 594, 790
LmnI GCTCC 5 cut(s) 163, 680, 688, 895, 977
Lsp1109I GCAGC 3 cut(s) 501, 734, 976
LweI GCATC 5 cut(s) 358, 478, 501, 753, 865
MaeI CTAG 3 cut(s) 156, 840, 974
MaeII ACGT 2 cut(s) 213, 480
MaeIII GTNAC 3 cut(s) 400, 481, 635
MalI GATC 9 cut(s) 95, 120, 255, 310, 378, 429, 449, 596, 792
MboI GATC 9 cut(s) 93, 118, 253, 308, 376, 427, 447, 594, 790
MboII GAAGA 4 cut(s) 208, 619, 743, 856
MfeI CAATTG 1 cut(s) 464
MflI RGATCY 2 cut(s) 376, 427
MhlI GDGCHC 4 cut(s) 151, 168, 505, 685
MluCI AATT 2 cut(s) 341, 464
MmeI TCCRAC 2 cut(s) 141, 710
Mph1103I ATGCAT 1 cut(s) 351
MseI TTAA 1 cut(s) 261
MspA1I CMGCKG 1 cut(s) 103
MspI CCGG 4 cut(s) 373, 386, 506, 734
MspR9I CCNGG 3 cut(s) 374, 506, 897
MunI CAATTG 1 cut(s) 464
MvaI CCWGG 1 cut(s) 897
MwoI GCNNNNNNNGC 3 cut(s) 189, 652, 845
NciI CCSGG 2 cut(s) 374, 506
NdeI CATATG 1 cut(s) 769
NdeII GATC 9 cut(s) 93, 118, 253, 308, 376, 427, 447, 594, 790
NlaIII CATG 8 cut(s) 238, 349, 370, 580, 619, 679, 702, 964
NlaIV GGNNCC 3 cut(s) 818, 819, 979
NmuCI GTSAC 3 cut(s) 400, 481, 635
NsiI ATGCAT 1 cut(s) 351
NspI RCATGY 1 cut(s) 580
PceI AGGCCT 2 cut(s) 336, 832
PciI ACATGT 1 cut(s) 576
PcsI WCGNNNNNNNCGW 3 cut(s) 456, 534, 636
PfeI GAWTC 5 cut(s) 282, 391, 641, 695, 779
PflFI GACNNNGTC 1 cut(s) 212
PflMI CCANNNNNTGG 1 cut(s) 492
PkrI GCNGC 6 cut(s) 362, 458, 516, 621, 724, 966
PpuMI RGGWCCY 1 cut(s) 817
PscI ACATGT 1 cut(s) 576
PshAI GACNNNNGTC 1 cut(s) 78
PshBI ATTAAT 1 cut(s) 261
Psp124BI GAGCTC 2 cut(s) 151, 685
Psp5II RGGWCCY 1 cut(s) 817
Psp6I CCWGG 1 cut(s) 895
PspEI GGTNACC 1 cut(s) 400
PspGI CCWGG 1 cut(s) 895
PspN4I GGNNCC 3 cut(s) 818, 819, 979
PspPI GGNCC 1 cut(s) 817
PspPPI RGGWCCY 1 cut(s) 817
PsuI RGATCY 2 cut(s) 376, 427
PsyI GACNNNGTC 1 cut(s) 212
PvuII CAGCTG 1 cut(s) 103
RsaI GTAC 3 cut(s) 233, 436, 560
RsaNI GTAC 3 cut(s) 232, 435, 559
SacI GAGCTC 2 cut(s) 151, 685
SaqAI TTAA 1 cut(s) 261
SatI GCNGC 6 cut(s) 361, 457, 515, 620, 723, 965
Sau3AI GATC 9 cut(s) 93, 118, 253, 308, 376, 427, 447, 594, 790
Sau96I GGNCC 1 cut(s) 817
ScrFI CCNGG 3 cut(s) 374, 506, 897
SduI GDGCHC 4 cut(s) 151, 168, 505, 685
SfaNI GCATC 5 cut(s) 358, 478, 501, 753, 865
SinI GGWCC 1 cut(s) 817
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
Sse9I AATT 2 cut(s) 341, 464
SseBI AGGCCT 2 cut(s) 336, 832
SsiI CCGC 3 cut(s) 360, 456, 619
SspMI CTAG 3 cut(s) 156, 840, 974
SstI GAGCTC 2 cut(s) 151, 685
StuI AGGCCT 2 cut(s) 336, 832
StyD4I CCNGG 3 cut(s) 372, 504, 895
TaaI ACNGT 1 cut(s) 563
TaiI ACGT 2 cut(s) 216, 483
TaqI TCGA 7 cut(s) 66, 450, 520, 547, 630, 754, 789
TasI AATT 2 cut(s) 341, 464
TatI WGTACW 1 cut(s) 231
TauI GCSGC 3 cut(s) 363, 459, 622
TfiI GAWTC 5 cut(s) 282, 391, 641, 695, 779
Tru1I TTAA 1 cut(s) 261
Tru9I TTAA 1 cut(s) 261
TscAI CASTG 2 cut(s) 362, 781
TseFI GTSAC 3 cut(s) 400, 481, 635
TseI GCWGC 3 cut(s) 514, 722, 964
Tsp45I GTSAC 3 cut(s) 400, 481, 635
TspDTI ATGAA 3 cut(s) 334, 355, 687
TspGWI ACGGA 1 cut(s) 458
TspRI CASTG 2 cut(s) 362, 781
Tth111I GACNNNGTC 1 cut(s) 212
Van91I CCANNNNNTGG 1 cut(s) 492
VpaK11BI GGWCC 1 cut(s) 817
VspI ATTAAT 1 cut(s) 261
XapI RAATTY 1 cut(s) 341
XceI RCATGY 1 cut(s) 580
XmiI GTMKAC 1 cut(s) 573
XspI CTAG 3 cut(s) 156, 840, 974
ZraI GACGTC 1 cut(s) 214
Zsp2I ATGCAT 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.