Rroxscaffold_3G00249870
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000445
Physical Location & Seq
Forward (+)
43618295 .. 43618615
321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00249870.1

Sequence Viewer

Length: 321 bp
ATGTATCAGATTTGTAGAGTCATTGGCGCTCCAACGAGGAATACATGGAGGGAGGGATGTCTTCTTGCAAGCCATATGAACTATGAATTTCCACAGATTGATAGTCTTGGTCTTAGAGCAGTAATACCGACATGGGTTAGTGATTCTGCAGTAGAGTTCATCGGGTCGCTTTGCTCTTGGGACCCTTTGAAGAGGCCAACAGCTGCACAAGCCCTTCACCATCCTTTCTTCACTGGAGGCTACAAAGATTCAGCTTCTACTAATTACTCAGCTAACAACGTTGGAAATGTAAGCTGCCTGCAGCAGCCTATTCTAGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

106

Amino Acids

11.7

Weight (kDa)

6.8

Isoelectric Point (pI)

37.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000445)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19110 AT4G19110 AT4G19110 AT5G45430 AT5G45430
fragaria_vesca FvH4_2g16890 FvH4_5g19220 FvH4_5g19340 FvH4_5g19350 FvH4_5g19360 FvH4_5g23910 FvH4_7g27810
malus_domestica MD00G1001400.v1.1 MD04G1058900.v1.1 MD04G1059300.v1.1 MD04G1059500.v1.1 MD04G1059600.v1.1 MD04G1059800.v1.1 MD04G1061700.v1.1 MD04G1061800.v1.1 MD06G1014800.v1.1 MD06G1052900.v1.1 MD06G1055500.v1.1
prunus_persica Prupe.5G021300_v2.0.a1 Prupe.5G065900_v2.0.a1 Prupe.5G066500_v2.0.a1
pyrus_communis pycom06g04440
rosa_chinensis RchiOBHm_Chr1g0374681 RchiOBHm_Chr2g0120471 RchiOBHm_Chr2g0120711 RchiOBHm_Chr7g0203821 RchiOBHm_Chr7g0203861 RchiOBHm_Chr7g0208401 RchiOBHm_Chr7g0209011 RchiOBHm_Chr7g0213341
rosa_laevigata RLG00000001348 RLG00000002813 RLG00000003173 RLG00000003212 RLG00000003503 RLG00000022835 RLG00000026723 RLG00000035532
rosa_multiflora Rmu_co7960007.1_g000001 Rmu_co7963796.1_g000001 Rmu_co8519951.1_g000002 Rmu_sc0002038.1_g000009 Rmu_sc0004947.1_g000015 Rmu_sc0007490.1_g000005 Rmu_sc0011180.1_g000003 Rmu_sc0015273.1_g000013 Rmu_ssc0000190.1_g000014 Rmu_ssc0000372.1_g000031
rosa_roxburghii Rroxscaffold_3G00246080 Rroxscaffold_3G00249860 Rroxscaffold_3G00249870 Rroxscaffold_3G00253500 Rroxscaffold_4G00283340
rosa_rugosa Rorug01G0384300 Rorug07G0079000 Rorug07G0079000 Rorug07G0079000 Rorug07G0108300 Rorug07G0141200
rosa_samantha Rh1AG395700 Rh1BG359900 Rh1DG006600 Rh1DG390900 Rh2AG287100 Rh3BG335800 Rh3CG321100 Rh5DG116800 Rh7AG273000 Rh7BG207600 Rh7BG207800 Rh7BG237700 Rh7BG268400 Rh7CG221100 Rh7CG221300 Rh7CG254000 Rh7CG257900 Rh7CG292200 Rh7DG215700 Rh7DG215900 Rh7DG244500 Rh7DG249800 Rh7DG280700
rosa_wichuraiana Rw0G010370 Rw1G035090 Rw2G023020 Rw7G018200 Rw7G020570 Rw7G023690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 279
AcsI RAATTY 1 cut(s) 86
AgsI TTSAA 1 cut(s) 190
AluBI AGCT 4 cut(s) 203, 254, 272, 294
AluI AGCT 4 cut(s) 203, 254, 272, 294
AoxI GGCC 1 cut(s) 194
ApeKI GCWGC 4 cut(s) 203, 294, 301, 304
ApoI RAATTY 1 cut(s) 86
AspLEI GCGC 1 cut(s) 29
AspS9I GGNCC 1 cut(s) 181
AsuHPI GGTGA 1 cut(s) 209
AvaII GGWCC 1 cut(s) 181
BbsI GAAGAC 1 cut(s) 53
BbvI GCAGC 4 cut(s) 190, 281, 313, 316
BccI CCATC 1 cut(s) 228
BfaI CTAG 2 cut(s) 314, 319
BfmI CTRYAG 2 cut(s) 147, 299
BfoI RGCGCY 1 cut(s) 30
BisI GCNGC 4 cut(s) 204, 295, 302, 305
BlsI GCNGC 4 cut(s) 205, 296, 303, 306
Bme18I GGWCC 1 cut(s) 181
BmgT120I GGNCC 1 cut(s) 181
BmiI GGNNCC 2 cut(s) 182, 183
BpiI GAAGAC 1 cut(s) 53
BpmI CTGGAG 1 cut(s) 255
Bse1I ACTGG 1 cut(s) 238
BseGI GGATG 2 cut(s) 62, 220
BseMII CTCAG 1 cut(s) 282
BseNI ACTGG 1 cut(s) 238
BseXI GCAGC 4 cut(s) 190, 281, 313, 316
BsgI GTGCAG 1 cut(s) 189
BshFI GGCC 1 cut(s) 196
BslFI GGGAC 1 cut(s) 194
BsmFI GGGAC 1 cut(s) 194
BsnI GGCC 1 cut(s) 196
BspANI GGCC 1 cut(s) 196
BspCNI CTCAG 1 cut(s) 281
BspLI GGNNCC 2 cut(s) 182, 183
BspMAI CTGCAG 2 cut(s) 151, 303
BsrI ACTGG 1 cut(s) 238
Bst6I CTCTTC 1 cut(s) 185
BstC8I GCNNGC 2 cut(s) 70, 299
BstDEI CTNAG 2 cut(s) 113, 268
BstF5I GGATG 2 cut(s) 62, 220
BstH2I RGCGCY 1 cut(s) 30
BstHHI GCGC 1 cut(s) 29
BstMWI GCNNNNNNNGC 1 cut(s) 209
BstSFI CTRYAG 2 cut(s) 147, 299
BstV1I GCAGC 4 cut(s) 190, 281, 313, 316
BstV2I GAAGAC 1 cut(s) 53
BsuRI GGCC 1 cut(s) 196
BtsCI GGATG 2 cut(s) 62, 220
BtsIMutI CAGTG 1 cut(s) 231
Cac8I GCNNGC 2 cut(s) 70, 299
CfoI GCGC 1 cut(s) 29
Cfr13I GGNCC 1 cut(s) 181
CviAII CATG 2 cut(s) 45, 132
CviJI RGCY 9 cut(s) 72, 196, 203, 212, 240, 254, 272, 294, 307
CviKI_1 RGCY 9 cut(s) 72, 196, 203, 212, 240, 254, 272, 294, 307
DdeI CTNAG 2 cut(s) 113, 268
Eam1104I CTCTTC 1 cut(s) 185
EarI CTCTTC 1 cut(s) 185
Eco47I GGWCC 1 cut(s) 181
EcoO109I RGGNCCY 1 cut(s) 181
FaeI CATG 2 cut(s) 48, 135
FaiI YATR 5 cut(s) 46, 75, 77, 84, 133
FaqI GGGAC 1 cut(s) 194
FatI CATG 2 cut(s) 44, 131
FauNDI CATATG 1 cut(s) 75
Fnu4HI GCNGC 4 cut(s) 204, 295, 302, 305
FokI GGATG 2 cut(s) 69, 207
Fsp4HI GCNGC 4 cut(s) 204, 295, 302, 305
FspBI CTAG 2 cut(s) 314, 319
GlaI GCGC 1 cut(s) 28
GluI GCNGC 4 cut(s) 204, 295, 302, 305
GsuI CTGGAG 1 cut(s) 255
HaeII RGCGCY 1 cut(s) 30
HaeIII GGCC 1 cut(s) 196
HhaI GCGC 1 cut(s) 29
Hin1II CATG 2 cut(s) 48, 135
Hin6I GCGC 1 cut(s) 27
HinP1I GCGC 1 cut(s) 27
HinfI GANTC 3 cut(s) 18, 143, 248
HphI GGTGA 1 cut(s) 209
Hpy188I TCNGA 1 cut(s) 9
HpyAV CCTTC 1 cut(s) 224
HpyCH4IV ACGT 1 cut(s) 279
HpyCH4V TGCA 4 cut(s) 68, 149, 206, 301
HpyF10VI GCNNNNNNNGC 1 cut(s) 209
HpyF3I CTNAG 2 cut(s) 113, 268
HpySE526I ACGT 1 cut(s) 279
Hsp92II CATG 2 cut(s) 48, 135
HspAI GCGC 1 cut(s) 27
KflI GGGWCCC 1 cut(s) 181
LmnI GCTCC 1 cut(s) 34
LpnPI CCDG 2 cut(s) 219, 311
Lsp1109I GCAGC 4 cut(s) 190, 281, 313, 316
MaeI CTAG 2 cut(s) 314, 319
MaeII ACGT 1 cut(s) 279
MboII GAAGA 3 cut(s) 53, 202, 220
MluCI AATT 2 cut(s) 86, 262
MlyI GAGTC 1 cut(s) 27
MmeI TCCRAC 2 cut(s) 56, 262
MnlI CCTC 5 cut(s) 30, 42, 46, 186, 230
MspA1I CMGCKG 1 cut(s) 203
MwoI GCNNNNNNNGC 1 cut(s) 209
NdeI CATATG 1 cut(s) 75
NlaIII CATG 2 cut(s) 48, 135
NlaIV GGNNCC 2 cut(s) 182, 183
PfeI GAWTC 2 cut(s) 143, 248
PkrI GCNGC 4 cut(s) 205, 296, 303, 306
PleI GAGTC 1 cut(s) 26
PpsI GAGTC 1 cut(s) 26
PpuMI RGGWCCY 1 cut(s) 181
Psp1406I AACGTT 1 cut(s) 279
Psp5II RGGWCCY 1 cut(s) 181
PspN4I GGNNCC 2 cut(s) 182, 183
PspPI GGNCC 1 cut(s) 181
PspPPI RGGWCCY 1 cut(s) 181
PstI CTGCAG 2 cut(s) 151, 303
PvuII CAGCTG 1 cut(s) 203
SatI GCNGC 4 cut(s) 204, 295, 302, 305
Sau96I GGNCC 1 cut(s) 181
SchI GAGTC 1 cut(s) 27
SetI ASST 5 cut(s) 205, 256, 274, 282, 296
SfcI CTRYAG 2 cut(s) 147, 299
SinI GGWCC 1 cut(s) 181
Sse9I AATT 2 cut(s) 86, 262
SspMI CTAG 2 cut(s) 314, 319
TaiI ACGT 1 cut(s) 282
TasI AATT 2 cut(s) 86, 262
TfiI GAWTC 2 cut(s) 143, 248
TscAI CASTG 1 cut(s) 238
TseI GCWGC 4 cut(s) 203, 294, 301, 304
TspDTI ATGAA 3 cut(s) 92, 99, 148
TspRI CASTG 1 cut(s) 238
VpaK11BI GGWCC 1 cut(s) 181
XapI RAATTY 1 cut(s) 86
XspI CTAG 2 cut(s) 314, 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.