Rorug05G0574500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0023023
Physical Location & Seq
Forward (+)
76968288 .. 76968818
531 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0574500.1

Sequence Viewer

Length: 531 bp
ATGATGCAAACCTCTCCTGTGTTATCTGCTAACGTAGAGATGTTGCAACATGCAGAGGAGGTGTATACACCAGAAGCTTTTAGACTCTTCCAGCAACAATACACAAGTATTGGTGATTATGTTGTTAATAAAGTTAGCAAGTCTGAGATGAAATATGAATACAAAGTATCTTATCGTGGTGTTGCTCGAGAGCATTTGGTAAAATTTGATGCTTCAGAGCAAACAATAACTTGTAGTTGCATGAAGTTTAATTTTGTTGGGATTTTATGCCGTCATGCATTGAAAGTGTTGGATAGGAAGAATGTGAGAAGAATCCCTCCTACTTACATATTAAATCGATGGAGTAAAGAAGCTAAGGCAAGAAGCATCACTAGTTATCATGGACCAAAGACTAATGAAAATCTGAAGCAGTCGATTGGAAAGCGGTACAGCCATTTGTGTCGTGATTATCGTGAGATTGCATCCTTTGCCGCAGAACATGAGGAATTAACAACGTATGCAGATGAATATGTCATCGATCGAGTTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

176

Amino Acids

20.53

Weight (kDa)

8.96

Isoelectric Point (pI)

39.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 73 - 100 2.7e-06 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0023023)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002829.1_g000014 Rmu_ssc0000190.1_g000011
rosa_rugosa Rorug05G0574500 Rorug07G0108300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 65
AciI CCGC 2 cut(s) 424, 471
AcsI RAATTY 1 cut(s) 203
AcuI CTGAAG 2 cut(s) 198, 425
AfaI GTAC 1 cut(s) 428
AgsI TTSAA 1 cut(s) 283
AhlI ACTAGT 1 cut(s) 371
AluBI AGCT 2 cut(s) 77, 353
AluI AGCT 2 cut(s) 77, 353
Ama87I CYCGRG 1 cut(s) 186
ApoI RAATTY 1 cut(s) 203
AspS9I GGNCC 1 cut(s) 383
AsuHPI GGTGA 1 cut(s) 125
AvaI CYCGRG 1 cut(s) 186
AvaII GGWCC 1 cut(s) 383
BccI CCATC 1 cut(s) 333
BceAI ACGGC 1 cut(s) 255
BcgI CGANNNNNNTGC 1 cut(s) 506
BcuI ACTAGT 1 cut(s) 371
BfaI CTAG 1 cut(s) 372
BisI GCNGC 1 cut(s) 471
BlsI GCNGC 1 cut(s) 472
Bme18I GGWCC 1 cut(s) 383
BmeT110I CYCGRG 1 cut(s) 186
BmgT120I GGNCC 1 cut(s) 383
BmsI GCATC 3 cut(s) 199, 375, 470
Bpu10I CCTNAGC 1 cut(s) 354
Bsa29I ATCGAT 2 cut(s) 337, 516
BseCI ATCGAT 2 cut(s) 337, 516
BseGI GGATG 1 cut(s) 461
BseMII CTCAG 1 cut(s) 135
BseRI GAGGAG 1 cut(s) 71
Bsh1285I CGRYCG 1 cut(s) 520
BshVI ATCGAT 2 cut(s) 337, 516
BsiEI CGRYCG 1 cut(s) 520
BsiHKCI CYCGRG 1 cut(s) 186
BsoBI CYCGRG 1 cut(s) 186
Bsp143I GATC 1 cut(s) 517
BspACI CCGC 2 cut(s) 424, 471
BspCNI CTCAG 1 cut(s) 136
BspDI ATCGAT 2 cut(s) 337, 516
BssMI GATC 1 cut(s) 517
BssNAI GTATAC 1 cut(s) 66
Bst1107I GTATAC 1 cut(s) 66
Bst6I CTCTTC 1 cut(s) 92
BstAPI GCANNNNNTGC 1 cut(s) 467
BstDEI CTNAG 2 cut(s) 144, 354
BstF5I GGATG 1 cut(s) 461
BstKTI GATC 1 cut(s) 520
BstMBI GATC 1 cut(s) 517
BstMCI CGRYCG 1 cut(s) 520
BstMWI GCNNNNNNNGC 1 cut(s) 467
BstNSI RCATGY 1 cut(s) 53
BstZ17I GTATAC 1 cut(s) 66
Bsu15I ATCGAT 2 cut(s) 337, 516
BsuTUI ATCGAT 2 cut(s) 337, 516
BtsCI GGATG 1 cut(s) 461
Cfr13I GGNCC 1 cut(s) 383
ClaI ATCGAT 2 cut(s) 337, 516
Csp6I GTAC 1 cut(s) 427
CviAII CATG 5 cut(s) 50, 241, 275, 380, 479
CviJI RGCY 3 cut(s) 77, 353, 432
CviKI_1 RGCY 3 cut(s) 77, 353, 432
CviQI GTAC 1 cut(s) 427
DdeI CTNAG 2 cut(s) 144, 354
DpnI GATC 1 cut(s) 519
DpnII GATC 1 cut(s) 517
Eam1104I CTCTTC 1 cut(s) 92
EarI CTCTTC 1 cut(s) 92
Eco47I GGWCC 1 cut(s) 383
Eco57I CTGAAG 2 cut(s) 198, 425
Eco88I CYCGRG 1 cut(s) 186
EcoT22I ATGCAT 1 cut(s) 280
FaeI CATG 5 cut(s) 53, 244, 278, 383, 482
FatI CATG 5 cut(s) 49, 240, 274, 379, 478
FblI GTMKAC 1 cut(s) 65
Fnu4HI GCNGC 1 cut(s) 471
FokI GGATG 1 cut(s) 448
Fsp4HI GCNGC 1 cut(s) 471
FspBI CTAG 1 cut(s) 372
GluI GCNGC 1 cut(s) 471
Hin1II CATG 5 cut(s) 53, 244, 278, 383, 482
HindIII AAGCTT 1 cut(s) 75
HinfI GANTC 2 cut(s) 84, 312
HphI GGTGA 1 cut(s) 125
Hpy166II GTNNAC 1 cut(s) 66
Hpy188I TCNGA 3 cut(s) 145, 217, 405
Hpy188III TCNNGA 3 cut(s) 188, 443, 452
Hpy8I GTNNAC 1 cut(s) 66
HpyCH4IV ACGT 2 cut(s) 33, 494
HpyCH4V TGCA 7 cut(s) 7, 46, 53, 240, 278, 461, 500
HpyF10VI GCNNNNNNNGC 1 cut(s) 467
HpyF3I CTNAG 2 cut(s) 144, 354
HpySE526I ACGT 2 cut(s) 33, 494
Hsp92II CATG 5 cut(s) 53, 244, 278, 383, 482
Kzo9I GATC 1 cut(s) 517
LpnPI CCDG 3 cut(s) 30, 84, 104
LweI GCATC 3 cut(s) 199, 375, 470
MaeI CTAG 1 cut(s) 372
MaeII ACGT 2 cut(s) 33, 494
MalI GATC 1 cut(s) 519
MboI GATC 1 cut(s) 517
MboII GAAGA 3 cut(s) 79, 310, 321
MluCI AATT 3 cut(s) 203, 250, 485
MlyI GAGTC 1 cut(s) 78
MmeI TCCRAC 1 cut(s) 270
MnlI CCTC 5 cut(s) 22, 49, 52, 327, 475
Mph1103I ATGCAT 1 cut(s) 280
MseI TTAA 5 cut(s) 126, 249, 332, 488, 529
MwoI GCNNNNNNNGC 1 cut(s) 467
NdeII GATC 1 cut(s) 517
NlaIII CATG 5 cut(s) 53, 244, 278, 383, 482
NsiI ATGCAT 1 cut(s) 280
NspI RCATGY 1 cut(s) 53
PaeR7I CTCGAG 1 cut(s) 186
PcsI WCGNNNNNNNCGW 1 cut(s) 448
PfeI GAWTC 1 cut(s) 312
PkrI GCNGC 1 cut(s) 472
Ple19I CGATCG 1 cut(s) 520
PleI GAGTC 1 cut(s) 78
PpsI GAGTC 1 cut(s) 78
PspPI GGNCC 1 cut(s) 383
PvuI CGATCG 1 cut(s) 520
RsaI GTAC 1 cut(s) 428
RsaNI GTAC 1 cut(s) 427
SaqAI TTAA 5 cut(s) 126, 249, 332, 488, 529
SatI GCNGC 1 cut(s) 471
Sau3AI GATC 1 cut(s) 517
Sau96I GGNCC 1 cut(s) 383
SchI GAGTC 1 cut(s) 78
SetI ASST 6 cut(s) 14, 36, 63, 79, 355, 497
SfaNI GCATC 3 cut(s) 199, 375, 470
Sfr274I CTCGAG 1 cut(s) 186
SinI GGWCC 1 cut(s) 383
SlaI CTCGAG 1 cut(s) 186
SmlI CTYRAG 1 cut(s) 186
SmoI CTYRAG 1 cut(s) 186
SpeI ACTAGT 1 cut(s) 371
Sse9I AATT 3 cut(s) 203, 250, 485
SsiI CCGC 2 cut(s) 424, 471
SspMI CTAG 1 cut(s) 372
TaiI ACGT 2 cut(s) 36, 497
TaqI TCGA 5 cut(s) 187, 337, 413, 516, 520
TasI AATT 3 cut(s) 203, 250, 485
TauI GCSGC 1 cut(s) 473
TfiI GAWTC 1 cut(s) 312
Tru1I TTAA 5 cut(s) 126, 249, 332, 488, 529
Tru9I TTAA 5 cut(s) 126, 249, 332, 488, 529
TspDTI ATGAA 5 cut(s) 164, 171, 257, 411, 519
VpaK11BI GGWCC 1 cut(s) 383
XapI RAATTY 1 cut(s) 203
XceI RCATGY 1 cut(s) 53
XhoI CTCGAG 1 cut(s) 186
XmiI GTMKAC 1 cut(s) 65
XspI CTAG 1 cut(s) 372
Zsp2I ATGCAT 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.