Rmu_ssc0000237.1_g000007

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000237.1
OG0025460
Physical Location & Seq
Forward (+)
13807 .. 15459
1653 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 891 bp
atggtgaggcccaaccgctactttcatcttgtagccctatgttcaagctacgctacggtatccggaagtcgcaaatccgtcgccgggaagccacctttccggccttgcaaagttgccctcacaaacatagctttctacatgttaaatagactagaataccgtccagcctcgtcttggccagtaccgaccccgtctcaatcagcaccggccctgccttggccaaacagcttccggcactcagccacactccagccaacctccaaaaagtttccggcaccacctagaaaccctgatcgacttgcatgcatgcattctaccattaacctcgctgctcctacagcccctgcagccccttgcaagcttctacctgcatcagcgcgcccttacatctcggccagccaccagcagtacccggccctcgtctcttccagtactgaccctgtctcggccagcaccggccccaccttggccaaacaacgtccaacactcagccacctctctgccatacttcagccaagctccaacaagtttccgacaccacctagcaaacctgatcgagccttgcacgtctgcatcaacacgcacgtgcatcaagacttgcgaacttcaaaacaacaaccgaattctaatgcattgtttacgcctactctggctaagagcgctcaagccctcatattgatgagacgacatatggatgagtcattccaatgggagtatatgtcagtcaaggaccctagggctttgtgggttgagcttgaagagcgttttggaaatattcaagataccctcctccctaacttgaaggtgacgtggaatgatctacgcttcactgactttaagactatttctgattacaattcaaagactctacgcatcaaatcgatgatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

296

Amino Acids

33.02

Weight (kDa)

10.08

Isoelectric Point (pI)

59.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025460)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000744.1_g000113 Rmu_sc0001998.1_g000044 Rmu_ssc0000237.1_g000007

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 376
AccB1I GGYRCC 1 cut(s) 274
AccII CGCG 1 cut(s) 379
AccIII TCCGGA 1 cut(s) 62
AciI CCGC 1 cut(s) 16
AcoI YGGCCR 5 cut(s) 176, 218, 393, 447, 468
AcsI RAATTY 1 cut(s) 622
AcuI CTGAAG 1 cut(s) 494
AcvI CACGTG 1 cut(s) 586
AfaI GTAC 3 cut(s) 183, 410, 433
AfeI AGCGCT 1 cut(s) 661
AfiI CCNNNNNNNGG 5 cut(s) 84, 174, 216, 445, 466
AflIII ACRYGT 1 cut(s) 138
AgsI TTSAA 6 cut(s) 45, 609, 758, 779, 802, 861
AjiI CACGTC 2 cut(s) 568, 810
AjuI GAANNNNNNNTTGG 2 cut(s) 750, 782
AleI CACNNNNGTG 1 cut(s) 584
AluBI AGCT 6 cut(s) 48, 131, 228, 361, 519, 754
AluI AGCT 6 cut(s) 48, 131, 228, 361, 519, 754
Alw26I GTCTC 4 cut(s) 198, 427, 448, 676
AlwNI CAGNNNCTG 1 cut(s) 344
Aor13HI TCCGGA 1 cut(s) 62
Aor51HI AGCGCT 1 cut(s) 661
ApeKI GCWGC 2 cut(s) 329, 347
ApoI RAATTY 1 cut(s) 622
AspA2I CCTAGG 1 cut(s) 734
AspLEI GCGC 3 cut(s) 379, 381, 662
AspS9I GGNCC 5 cut(s) 9, 208, 415, 458, 730
AsuC2I CCSGG 2 cut(s) 85, 413
AsuHPI GGTGA 2 cut(s) 16, 817
AvaII GGWCC 1 cut(s) 730
AvrII CCTAGG 1 cut(s) 734
BalI TGGCCA 3 cut(s) 178, 220, 470
BanI GGYRCC 1 cut(s) 274
BbrPI CACGTG 1 cut(s) 586
BbvI GCAGC 2 cut(s) 316, 359
BcgI CGANNNNNNTGC 4 cut(s) 61, 95, 285, 319
BciVI GTATCC 1 cut(s) 70
BcnI CCSGG 2 cut(s) 85, 413
BcoDI GTCTC 4 cut(s) 198, 427, 448, 676
BfaI CTAG 4 cut(s) 152, 282, 543, 735
BfmI CTRYAG 2 cut(s) 336, 345
BfoI RGCGCY 1 cut(s) 663
BfuAI ACCTGC 1 cut(s) 376
BfuI GTATCC 1 cut(s) 70
BisI GCNGC 2 cut(s) 330, 348
BlnI CCTAGG 1 cut(s) 734
BlsI GCNGC 2 cut(s) 331, 349
BmcAI AGTACT 1 cut(s) 433
Bme1390I CCNGG 2 cut(s) 85, 413
Bme18I GGWCC 1 cut(s) 730
BmgBI CACGTC 2 cut(s) 568, 810
BmgT120I GGNCC 5 cut(s) 9, 208, 415, 458, 730
BmiI GGNNCC 3 cut(s) 276, 460, 732
BmrFI CCNGG 2 cut(s) 85, 413
BmsI GCATC 4 cut(s) 380, 582, 598, 882
BpmI CTGGAG 1 cut(s) 233
BpuEI CTTGAG 1 cut(s) 648
BpuMI CCSGG 2 cut(s) 85, 413
Bsa29I ATCGAT 1 cut(s) 881
BsaAI YACGTR 1 cut(s) 586
BsaJI CCNNGG 3 cut(s) 215, 465, 734
BsaWI WCCGGW 1 cut(s) 62
BsaXI ACNNNNNCTCC 2 cut(s) 704, 734
Bsc4I CCNNNNNNNGG 5 cut(s) 84, 174, 216, 445, 466
Bse118I RCCGGY 2 cut(s) 205, 455
Bse1I ACTGG 2 cut(s) 179, 429
BseAI TCCGGA 1 cut(s) 62
BseCI ATCGAT 1 cut(s) 881
BseDI CCNNGG 3 cut(s) 215, 465, 734
BseGI GGATG 1 cut(s) 700
BseLI CCNNNNNNNGG 5 cut(s) 84, 174, 216, 445, 466
BseMII CTCAG 2 cut(s) 252, 502
BseNI ACTGG 2 cut(s) 179, 429
BsePI GCGCGC 1 cut(s) 377
BseRI GAGGAG 1 cut(s) 779
BseXI GCAGC 2 cut(s) 316, 359
Bsh1236I CGCG 1 cut(s) 379
BshNI GGYRCC 1 cut(s) 274
BshVI ATCGAT 1 cut(s) 881
BsiSI CCGG 8 cut(s) 63, 84, 100, 206, 232, 272, 413, 456
BslI CCNNNNNNNGG 5 cut(s) 84, 174, 216, 445, 466
BsmAI GTCTC 4 cut(s) 198, 427, 448, 676
BsmBI CGTCTC 3 cut(s) 198, 427, 676
BsmI GAATGC 1 cut(s) 310
Bsp13I TCCGGA 1 cut(s) 62
Bsp143I GATC 3 cut(s) 292, 553, 817
BspACI CCGC 1 cut(s) 16
BspCNI CTCAG 2 cut(s) 251, 501
BspDI ATCGAT 1 cut(s) 881
BspEI TCCGGA 1 cut(s) 62
BspFNI CGCG 1 cut(s) 379
BspLI GGNNCC 3 cut(s) 276, 460, 732
BspMAI CTGCAG 1 cut(s) 349
BspMI ACCTGC 1 cut(s) 376
BspQI GCTCTTC 1 cut(s) 753
BspT107I GGYRCC 1 cut(s) 274
BsrFI RCCGGY 2 cut(s) 205, 455
BsrI ACTGG 2 cut(s) 179, 429
BssAI RCCGGY 2 cut(s) 205, 455
BssECI CCNNGG 3 cut(s) 215, 465, 734
BssHII GCGCGC 1 cut(s) 377
BssMI GATC 3 cut(s) 292, 553, 817
BssT1I CCWWGG 3 cut(s) 215, 465, 734
Bst4CI ACNGT 2 cut(s) 58, 161
Bst6I CTCTTC 2 cut(s) 430, 753
BstBAI YACGTR 1 cut(s) 586
BstC8I GCNNGC 6 cut(s) 304, 308, 359, 379, 397, 451
BstDEI CTNAG 3 cut(s) 238, 488, 654
BstF5I GGATG 1 cut(s) 700
BstFNI CGCG 1 cut(s) 379
BstH2I RGCGCY 1 cut(s) 663
BstHHI GCGC 3 cut(s) 379, 381, 662
BstKTI GATC 3 cut(s) 295, 556, 820
BstMAI GTCTC 4 cut(s) 198, 427, 448, 676
BstMBI GATC 3 cut(s) 292, 553, 817
BstMWI GCNNNNNNNGC 4 cut(s) 338, 347, 659, 760
BstNSI RCATGY 3 cut(s) 142, 306, 310
BstSCI CCNGG 2 cut(s) 83, 411
BstSFI CTRYAG 2 cut(s) 336, 345
BstUI CGCG 1 cut(s) 379
BstV1I GCAGC 2 cut(s) 316, 359
Bsu15I ATCGAT 1 cut(s) 881
BsuI GTATCC 1 cut(s) 70
BsuTUI ATCGAT 1 cut(s) 881
BtrI CACGTC 2 cut(s) 568, 810
BtsCI GGATG 1 cut(s) 700
BtsIMutI CAGTG 1 cut(s) 828
BveI ACCTGC 1 cut(s) 376
Cac8I GCNNGC 6 cut(s) 304, 308, 359, 379, 397, 451
CaiI CAGNNNCTG 1 cut(s) 344
CfoI GCGC 3 cut(s) 379, 381, 662
Cfr10I RCCGGY 2 cut(s) 205, 455
Cfr13I GGNCC 5 cut(s) 9, 208, 415, 458, 730
ClaI ATCGAT 1 cut(s) 881
Csp6I GTAC 3 cut(s) 182, 409, 432
CviAII CATG 3 cut(s) 139, 303, 307
CviQI GTAC 3 cut(s) 182, 409, 432
DdeI CTNAG 3 cut(s) 238, 488, 654
DpnI GATC 3 cut(s) 294, 555, 819
DpnII GATC 3 cut(s) 292, 553, 817
EaeI YGGCCR 5 cut(s) 176, 218, 393, 447, 468
Eam1104I CTCTTC 2 cut(s) 430, 753
EarI CTCTTC 2 cut(s) 430, 753
Eco130I CCWWGG 3 cut(s) 215, 465, 734
Eco47I GGWCC 1 cut(s) 730
Eco47III AGCGCT 1 cut(s) 661
Eco57I CTGAAG 1 cut(s) 494
Eco72I CACGTG 1 cut(s) 586
EcoO109I RGGNCCY 1 cut(s) 730
EcoRI GAATTC 1 cut(s) 622
EcoT14I CCWWGG 3 cut(s) 215, 465, 734
EcoT22I ATGCAT 3 cut(s) 308, 312, 634
ErhI CCWWGG 3 cut(s) 215, 465, 734
Esp3I CGTCTC 3 cut(s) 198, 427, 676
FaeI CATG 3 cut(s) 142, 306, 310
FatI CATG 3 cut(s) 138, 302, 306
FauNDI CATATG 1 cut(s) 690
Fnu4HI GCNGC 2 cut(s) 330, 348
FokI GGATG 1 cut(s) 707
Fsp4HI GCNGC 2 cut(s) 330, 348
FspBI CTAG 4 cut(s) 152, 282, 543, 735
GlaI GCGC 3 cut(s) 378, 380, 661
GluI GCNGC 2 cut(s) 330, 348
GsuI CTGGAG 1 cut(s) 233
HaeII RGCGCY 1 cut(s) 663
HapII CCGG 8 cut(s) 63, 84, 100, 206, 232, 272, 413, 456
HhaI GCGC 3 cut(s) 379, 381, 662
Hin1II CATG 3 cut(s) 142, 306, 310
Hin6I GCGC 3 cut(s) 377, 379, 660
HinP1I GCGC 3 cut(s) 377, 379, 660
HindIII AAGCTT 1 cut(s) 359
HinfI GANTC 2 cut(s) 698, 865
HpaII CCGG 8 cut(s) 63, 84, 100, 206, 232, 272, 413, 456
HphI GGTGA 2 cut(s) 16, 817
Hpy166II GTNNAC 1 cut(s) 639
Hpy188I TCNGA 2 cut(s) 534, 850
Hpy188III TCNNGA 3 cut(s) 63, 593, 779
Hpy8I GTNNAC 1 cut(s) 639
Hpy99I CGWCG 1 cut(s) 83
HpyAV CCTTC 1 cut(s) 796
HpyCH4III ACNGT 2 cut(s) 58, 161
HpyCH4IV ACGT 4 cut(s) 478, 567, 585, 809
HpyF10VI GCNNNNNNNGC 4 cut(s) 338, 347, 659, 760
HpyF3I CTNAG 3 cut(s) 238, 488, 654
HpySE526I ACGT 4 cut(s) 478, 567, 585, 809
Hsp92II CATG 3 cut(s) 142, 306, 310
HspAI GCGC 3 cut(s) 377, 379, 660
Kpn2I TCCGGA 1 cut(s) 62
Kzo9I GATC 3 cut(s) 292, 553, 817
LguI GCTCTTC 1 cut(s) 753
LmnI GCTCC 2 cut(s) 337, 524
Lsp1109I GCAGC 2 cut(s) 316, 359
LweI GCATC 4 cut(s) 380, 582, 598, 882
MaeI CTAG 4 cut(s) 152, 282, 543, 735
MaeII ACGT 4 cut(s) 478, 567, 585, 809
MaeIII GTNAC 1 cut(s) 805
MalI GATC 3 cut(s) 294, 555, 819
MboI GATC 3 cut(s) 292, 553, 817
MboII GAAGA 2 cut(s) 417, 770
MlsI TGGCCA 3 cut(s) 178, 220, 470
MluCI AATT 2 cut(s) 622, 856
MluNI TGGCCA 3 cut(s) 178, 220, 470
MlyI GAGTC 2 cut(s) 707, 859
MmeI TCCRAC 3 cut(s) 506, 546, 557
MnlI CCTC 9 cut(s) 128, 178, 268, 335, 428, 506, 680, 797, 800
Mox20I TGGCCA 3 cut(s) 178, 220, 470
Mph1103I ATGCAT 3 cut(s) 308, 312, 634
MroI TCCGGA 1 cut(s) 62
MscI TGGCCA 3 cut(s) 178, 220, 470
MseI TTAA 3 cut(s) 143, 321, 837
MslI CAYNNNNRTG 4 cut(s) 584, 677, 693, 706
Msp20I TGGCCA 3 cut(s) 178, 220, 470
MspI CCGG 8 cut(s) 63, 84, 100, 206, 232, 272, 413, 456
MspR9I CCNGG 2 cut(s) 85, 413
Mva1269I GAATGC 1 cut(s) 310
MvnI CGCG 1 cut(s) 379
MwoI GCNNNNNNNGC 4 cut(s) 338, 347, 659, 760
NciI CCSGG 2 cut(s) 85, 413
NdeI CATATG 1 cut(s) 690
NdeII GATC 3 cut(s) 292, 553, 817
NlaIII CATG 3 cut(s) 142, 306, 310
NlaIV GGNNCC 3 cut(s) 276, 460, 732
NmeAIII GCCGAG 2 cut(s) 371, 425
NmuCI GTSAC 1 cut(s) 805
NsiI ATGCAT 3 cut(s) 308, 312, 634
NspI RCATGY 3 cut(s) 142, 306, 310
OliI CACNNNNGTG 1 cut(s) 584
PaeI GCATGC 2 cut(s) 306, 310
PauI GCGCGC 1 cut(s) 377
PciI ACATGT 1 cut(s) 138
PciSI GCTCTTC 1 cut(s) 753
PctI GAATGC 1 cut(s) 310
PflFI GACNNNGTC 2 cut(s) 190, 440
PkrI GCNGC 2 cut(s) 331, 349
PleI GAGTC 2 cut(s) 706, 859
PmaCI CACGTG 1 cut(s) 586
PmlI CACGTG 1 cut(s) 586
PpsI GAGTC 2 cut(s) 706, 859
Ppu21I YACGTR 1 cut(s) 586
PpuMI RGGWCCY 1 cut(s) 730
PscI ACATGT 1 cut(s) 138
Psp5II RGGWCCY 1 cut(s) 730
PspCI CACGTG 1 cut(s) 586
PspN4I GGNNCC 3 cut(s) 276, 460, 732
PspPI GGNCC 5 cut(s) 9, 208, 415, 458, 730
PspPPI RGGWCCY 1 cut(s) 730
PstI CTGCAG 1 cut(s) 349
PstNI CAGNNNCTG 1 cut(s) 344
PsyI GACNNNGTC 2 cut(s) 190, 440
PteI GCGCGC 1 cut(s) 377
RsaI GTAC 3 cut(s) 183, 410, 433
RsaNI GTAC 3 cut(s) 182, 409, 432
RseI CAYNNNNRTG 4 cut(s) 584, 677, 693, 706
SapI GCTCTTC 1 cut(s) 753
SaqAI TTAA 3 cut(s) 143, 321, 837
SatI GCNGC 2 cut(s) 330, 348
Sau3AI GATC 3 cut(s) 292, 553, 817
Sau96I GGNCC 5 cut(s) 9, 208, 415, 458, 730
ScaI AGTACT 1 cut(s) 433
SchI GAGTC 2 cut(s) 707, 859
ScrFI CCNGG 2 cut(s) 85, 413
SfaNI GCATC 4 cut(s) 380, 582, 598, 882
SfcI CTRYAG 2 cut(s) 336, 345
SinI GGWCC 1 cut(s) 730
SmiMI CAYNNNNRTG 4 cut(s) 584, 677, 693, 706
SmlI CTYRAG 1 cut(s) 663
SmoI CTYRAG 1 cut(s) 663
SphI GCATGC 2 cut(s) 306, 310
Sse9I AATT 2 cut(s) 622, 856
SsiI CCGC 1 cut(s) 16
SspI AATATT 1 cut(s) 775
SspMI CTAG 4 cut(s) 152, 282, 543, 735
StyD4I CCNGG 2 cut(s) 83, 411
StyI CCWWGG 3 cut(s) 215, 465, 734
TaaI ACNGT 2 cut(s) 58, 161
TaiI ACGT 4 cut(s) 481, 570, 588, 812
TaqI TCGA 3 cut(s) 295, 556, 881
TasI AATT 2 cut(s) 622, 856
TatI WGTACW 1 cut(s) 431
Tru1I TTAA 3 cut(s) 143, 321, 837
Tru9I TTAA 3 cut(s) 143, 321, 837
TscAI CASTG 1 cut(s) 835
TseFI GTSAC 1 cut(s) 805
TseI GCWGC 2 cut(s) 329, 347
Tsp45I GTSAC 1 cut(s) 805
TspDTI ATGAA 1 cut(s) 14
TspGWI ACGGA 1 cut(s) 67
TspRI CASTG 1 cut(s) 835
Tth111I GACNNNGTC 2 cut(s) 190, 440
VpaK11BI GGWCC 1 cut(s) 730
XapI RAATTY 1 cut(s) 622
XceI RCATGY 3 cut(s) 142, 306, 310
XcmI CCANNNNNNNNNTGG 1 cut(s) 171
XmaJI CCTAGG 1 cut(s) 734
XspI CTAG 4 cut(s) 152, 282, 543, 735
ZrmI AGTACT 1 cut(s) 433
Zsp2I ATGCAT 3 cut(s) 308, 312, 634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.