Rmu_ssc0000284.1_g000002

Cytosolic domain of 10TM putative phosphate transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000284.1
OG0031016
Physical Location & Seq
Forward (+)
6997 .. 9039
2043 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000284.1_g000002.1.cds

Sequence Viewer

Length: 831 bp
atggctacactgggtgatataggagttgcagcagcaatcaatattctgactgcatttgctttctttgtggcgtttgccatactccggcttcagcctgtgaacgatagggtctactttccgaaatggtatctcaaaggactgagggccagtccgttgggcggggcacttgtaaccaaatttgtgaatttggactacaggtcatatgtgaggtttctgaattggatgcctgccgcattgcaaatgccggaacctgagctagttgcacatgcagggttggactctgtagtttacctgaggatttacttgacagggctaaagatttttgttcctattgcatttctggcgttttcagtcatggtccctgtcaattggactaacagcaccctaaagaagtcaaatttagtttacagcaacctagatgagctttctatttcaaatgttcctcttggatctcatagattttggactcatttagtaatggtctatgcttttacattctggacatgctatgttttgaatagggagtatgagatcgttgcaacaatgagattgcactttcttgcatcagaacaacggcgccctgatcagttcacagtactggttagaaatgtgccaccagatcctgatgaaacagtcagtcagcttgtggaacatttttttcttgttaaccacccagatcattatctcactcatcaggttgtttacaatgcaaataaactttctaaattagtcaatgagaagaagaaagttcagaattggctcgactactatcaacttaaattttcaagaaatccatcaagaagaccattaacaaaggtatcatattcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHM7_cyt RSN1_7TM RSN1_TM

Protein Analysis

276

Amino Acids

31.89

Weight (kDa)

9.54

Isoelectric Point (pI)

37.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031016)

Species Orthologous Gene IDs
rosa_multiflora Rmu_ssc0000284.1_g000002
rosa_samantha Rh2AG536300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 576
AccI GTMKAC 1 cut(s) 111
AciI CCGC 2 cut(s) 159, 231
AclWI GGATC 2 cut(s) 457, 614
AcsI RAATTY 4 cut(s) 176, 184, 397, 779
AcuI CTGAAG 1 cut(s) 74
AcyI GRCGYC 1 cut(s) 577
AdeI CACNNNGTG 1 cut(s) 14
AfaI GTAC 1 cut(s) 597
AfiI CCNNNNNNNGG 2 cut(s) 84, 158
AgsI TTSAA 3 cut(s) 435, 517, 786
AhdI GACNNNNNGTC 1 cut(s) 196
AluBI AGCT 3 cut(s) 256, 424, 643
AluI AGCT 3 cut(s) 256, 424, 643
AlwI GGATC 2 cut(s) 457, 614
AlwNI CAGNNNCTG 1 cut(s) 623
AoxI GGCC 1 cut(s) 144
ApeKI GCWGC 2 cut(s) 29, 32
ApoI RAATTY 4 cut(s) 176, 184, 397, 779
AspLEI GCGC 1 cut(s) 579
AspS9I GGNCC 2 cut(s) 144, 358
AsuHPI GGTGA 1 cut(s) 26
AvaII GGWCC 1 cut(s) 358
AxyI CCTNAGG 1 cut(s) 293
BaeGI GKGCMC 1 cut(s) 166
BaeI ACNNNNGTAYC 1 cut(s) 801
BanI GGYRCC 1 cut(s) 576
BbsI GAAGAC 1 cut(s) 808
BbvI GCAGC 2 cut(s) 41, 44
BccI CCATC 1 cut(s) 802
BceAI ACGGC 1 cut(s) 590
BclI TGATCA 1 cut(s) 583
BfaI CTAG 2 cut(s) 257, 416
BfmI CTRYAG 2 cut(s) 193, 282
BfoI RGCGCY 1 cut(s) 580
BisI GCNGC 3 cut(s) 30, 33, 231
BlsI GCNGC 3 cut(s) 31, 34, 232
BmcAI AGTACT 1 cut(s) 597
Bme18I GGWCC 1 cut(s) 358
BmeRI GACNNNNNGTC 1 cut(s) 196
BmgT120I GGNCC 2 cut(s) 144, 358
BmiI GGNNCC 3 cut(s) 249, 360, 578
BmrI ACTGGG 1 cut(s) 20
BmsI GCATC 2 cut(s) 213, 572
BmuI ACTGGG 1 cut(s) 20
BpiI GAAGAC 1 cut(s) 808
Bpu10I CCTNAGC 1 cut(s) 252
BsaBI GATNNNNATC 1 cut(s) 681
BsaHI GRCGYC 1 cut(s) 577
Bsc4I CCNNNNNNNGG 2 cut(s) 84, 158
Bse1I ACTGG 3 cut(s) 15, 147, 603
Bse21I CCTNAGG 1 cut(s) 293
Bse3DI GCAATG 1 cut(s) 233
Bse8I GATNNNNATC 1 cut(s) 681
BseGI GGATG 1 cut(s) 228
BseJI GATNNNNATC 1 cut(s) 681
BseLI CCNNNNNNNGG 2 cut(s) 84, 158
BseMI GCAATG 1 cut(s) 233
BseMII CTCAG 3 cut(s) 131, 243, 284
BseNI ACTGG 3 cut(s) 15, 147, 603
BseSI GKGCMC 1 cut(s) 166
BseXI GCAGC 2 cut(s) 41, 44
BshFI GGCC 1 cut(s) 146
BshNI GGYRCC 1 cut(s) 576
BsiSI CCGG 2 cut(s) 85, 245
BslFI GGGAC 1 cut(s) 344
BslI CCNNNNNNNGG 2 cut(s) 84, 158
BsmFI GGGAC 1 cut(s) 344
BsnI GGCC 1 cut(s) 146
Bsp1286I GDGCHC 1 cut(s) 166
Bsp143I GATC 5 cut(s) 449, 531, 583, 619, 676
BspACI CCGC 2 cut(s) 159, 231
BspANI GGCC 1 cut(s) 146
BspCNI CTCAG 3 cut(s) 132, 244, 285
BspLI GGNNCC 3 cut(s) 249, 360, 578
BspPI GGATC 2 cut(s) 457, 614
BspT107I GGYRCC 1 cut(s) 576
BsrDI GCAATG 1 cut(s) 233
BsrI ACTGG 3 cut(s) 15, 147, 603
BssMI GATC 5 cut(s) 449, 531, 583, 619, 676
BssNI GRCGYC 1 cut(s) 577
Bst4CI ACNGT 2 cut(s) 595, 634
BstACI GRCGYC 1 cut(s) 577
BstC8I GCNNGC 1 cut(s) 228
BstDEI CTNAG 3 cut(s) 140, 252, 293
BstF5I GGATG 1 cut(s) 228
BstH2I RGCGCY 1 cut(s) 580
BstHHI GCGC 1 cut(s) 579
BstKTI GATC 5 cut(s) 452, 534, 586, 622, 679
BstMBI GATC 5 cut(s) 449, 531, 583, 619, 676
BstMWI GCNNNNNNNGC 1 cut(s) 341
BstNSI RCATGY 2 cut(s) 269, 507
BstSFI CTRYAG 2 cut(s) 193, 282
BstSLI GKGCMC 1 cut(s) 166
BstV1I GCAGC 2 cut(s) 41, 44
BstV2I GAAGAC 1 cut(s) 808
BstX2I RGATCY 2 cut(s) 449, 619
BstXI CCANNNNNNTGG 1 cut(s) 154
BstYI RGATCY 2 cut(s) 449, 619
Bsu36I CCTNAGG 1 cut(s) 293
BsuRI GGCC 1 cut(s) 146
BtsCI GGATG 1 cut(s) 228
BtsIMutI CAGTG 1 cut(s) 8
Cac8I GCNNGC 1 cut(s) 228
CaiI CAGNNNCTG 1 cut(s) 623
CfoI GCGC 1 cut(s) 579
Cfr13I GGNCC 2 cut(s) 144, 358
Csp6I GTAC 1 cut(s) 596
CviAII CATG 3 cut(s) 266, 355, 504
CviJI RGCY 9 cut(s) 5, 88, 94, 146, 256, 313, 424, 643, 760
CviKI_1 RGCY 9 cut(s) 5, 88, 94, 146, 256, 313, 424, 643, 760
CviQI GTAC 1 cut(s) 596
DdeI CTNAG 3 cut(s) 140, 252, 293
DinI GGCGCC 1 cut(s) 578
DpnI GATC 5 cut(s) 451, 533, 585, 621, 678
DpnII GATC 5 cut(s) 449, 531, 583, 619, 676
DraIII CACNNNGTG 1 cut(s) 14
DriI GACNNNNNGTC 1 cut(s) 196
Eam1105I GACNNNNNGTC 1 cut(s) 196
Eco47I GGWCC 1 cut(s) 358
Eco57I CTGAAG 1 cut(s) 74
Eco81I CCTNAGG 1 cut(s) 293
EgeI GGCGCC 1 cut(s) 578
EheI GGCGCC 1 cut(s) 578
FaeI CATG 3 cut(s) 269, 358, 507
FaqI GGGAC 1 cut(s) 344
FatI CATG 3 cut(s) 265, 354, 503
FauI CCCGC 1 cut(s) 152
FauNDI CATATG 1 cut(s) 202
FbaI TGATCA 1 cut(s) 583
FblI GTMKAC 1 cut(s) 111
Fnu4HI GCNGC 3 cut(s) 30, 33, 231
FokI GGATG 1 cut(s) 235
Fsp4HI GCNGC 3 cut(s) 30, 33, 231
FspBI CTAG 2 cut(s) 257, 416
GlaI GCGC 1 cut(s) 578
GluI GCNGC 3 cut(s) 30, 33, 231
HaeII RGCGCY 1 cut(s) 580
HaeIII GGCC 1 cut(s) 146
HapII CCGG 2 cut(s) 85, 245
HhaI GCGC 1 cut(s) 579
Hin1I GRCGYC 1 cut(s) 577
Hin1II CATG 3 cut(s) 269, 358, 507
Hin6I GCGC 1 cut(s) 577
HinP1I GCGC 1 cut(s) 577
HincII GTYRAC 1 cut(s) 667
HindII GTYRAC 1 cut(s) 667
HinfI GANTC 2 cut(s) 278, 466
HpaI GTTAAC 1 cut(s) 667
HpaII CCGG 2 cut(s) 85, 245
HphI GGTGA 1 cut(s) 26
Hpy166II GTNNAC 7 cut(s) 100, 112, 289, 406, 591, 667, 703
Hpy188I TCNGA 5 cut(s) 48, 120, 216, 568, 753
Hpy188III TCNNGA 5 cut(s) 499, 623, 786, 798, 828
Hpy8I GTNNAC 7 cut(s) 100, 112, 289, 406, 591, 667, 703
HpyCH4III ACNGT 2 cut(s) 595, 634
HpyF10VI GCNNNNNNNGC 1 cut(s) 341
HpyF3I CTNAG 3 cut(s) 140, 252, 293
Hsp92I GRCGYC 1 cut(s) 577
Hsp92II CATG 3 cut(s) 269, 358, 507
HspAI GCGC 1 cut(s) 577
KasI GGCGCC 1 cut(s) 576
Ksp22I TGATCA 1 cut(s) 583
KspAI GTTAAC 1 cut(s) 667
Kzo9I GATC 5 cut(s) 449, 531, 583, 619, 676
Lsp1109I GCAGC 2 cut(s) 41, 44
LweI GCATC 2 cut(s) 213, 572
MaeI CTAG 2 cut(s) 257, 416
MaeIII GTNAC 1 cut(s) 169
MalI GATC 5 cut(s) 451, 533, 585, 621, 678
MboI GATC 5 cut(s) 449, 531, 583, 619, 676
MboII GAAGA 3 cut(s) 751, 754, 813
MfeI CAATTG 1 cut(s) 367
MflI RGATCY 2 cut(s) 449, 619
MhlI GDGCHC 1 cut(s) 166
MluCI AATT 8 cut(s) 176, 184, 217, 367, 397, 725, 754, 779
Mly113I GGCGCC 1 cut(s) 577
MlyI GAGTC 2 cut(s) 272, 460
MmeI TCCRAC 1 cut(s) 255
MnlI CCTC 4 cut(s) 135, 201, 288, 453
MseI TTAA 3 cut(s) 666, 777, 809
MspI CCGG 2 cut(s) 85, 245
MunI CAATTG 1 cut(s) 367
MwoI GCNNNNNNNGC 1 cut(s) 341
NarI GGCGCC 1 cut(s) 577
NdeI CATATG 1 cut(s) 202
NdeII GATC 5 cut(s) 449, 531, 583, 619, 676
NlaIII CATG 3 cut(s) 269, 358, 507
NlaIV GGNNCC 3 cut(s) 249, 360, 578
NspI RCATGY 2 cut(s) 269, 507
PkrI GCNGC 3 cut(s) 31, 34, 232
PleI GAGTC 2 cut(s) 272, 460
PluTI GGCGCC 1 cut(s) 580
PpsI GAGTC 2 cut(s) 272, 460
PspN4I GGNNCC 3 cut(s) 249, 360, 578
PspPI GGNCC 2 cut(s) 144, 358
PstNI CAGNNNCTG 1 cut(s) 623
PsuI RGATCY 2 cut(s) 449, 619
RsaI GTAC 1 cut(s) 597
RsaNI GTAC 1 cut(s) 596
SaqAI TTAA 3 cut(s) 666, 777, 809
SatI GCNGC 3 cut(s) 30, 33, 231
Sau3AI GATC 5 cut(s) 449, 531, 583, 619, 676
Sau96I GGNCC 2 cut(s) 144, 358
ScaI AGTACT 1 cut(s) 597
SchI GAGTC 2 cut(s) 272, 460
SduI GDGCHC 1 cut(s) 166
SfaNI GCATC 2 cut(s) 213, 572
SfcI CTRYAG 2 cut(s) 193, 282
SfoI GGCGCC 1 cut(s) 578
SinI GGWCC 1 cut(s) 358
Sse9I AATT 8 cut(s) 176, 184, 217, 367, 397, 725, 754, 779
SsiI CCGC 2 cut(s) 159, 231
SspDI GGCGCC 1 cut(s) 576
SspI AATATT 1 cut(s) 43
SspMI CTAG 2 cut(s) 257, 416
TaaI ACNGT 2 cut(s) 595, 634
TaqI TCGA 1 cut(s) 762
TasI AATT 8 cut(s) 176, 184, 217, 367, 397, 725, 754, 779
TatI WGTACW 1 cut(s) 595
TauI GCSGC 1 cut(s) 233
Tru1I TTAA 3 cut(s) 666, 777, 809
Tru9I TTAA 3 cut(s) 666, 777, 809
TscAI CASTG 1 cut(s) 15
TseI GCWGC 2 cut(s) 29, 32
TspDTI ATGAA 1 cut(s) 642
TspGWI ACGGA 1 cut(s) 141
TspRI CASTG 1 cut(s) 15
VpaK11BI GGWCC 1 cut(s) 358
XapI RAATTY 4 cut(s) 176, 184, 397, 779
XceI RCATGY 2 cut(s) 269, 507
XmiI GTMKAC 1 cut(s) 111
XspI CTAG 2 cut(s) 257, 416
ZrmI AGTACT 1 cut(s) 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.