Rmu_ssc0000286.1_g000023

Heterogeneous nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000286.1
OG0031017
Physical Location & Seq
Forward (+)
154998 .. 157775
2778 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 441 bp
atgggttcaggaagtgggaccattggaggaagcacatttggcaatactggggttaactggcggtcttcggcaatttcacctcaaggtggaggaaataatgtttctaacaatagtgggaatcttggttatggagccggtgataacacttatggtttgggaacgggagggtatggaaggaacagtggtacaagtgtaggccctgcgtcttcattcaatgcatcaaatggtggttttgatggagccttcaatgacttttacagtagtggttcagtttatggagatcccacttggcgatcctcaaattccgagcgagatgggcctggaccctttggttatggacttggcagtgcagcttctgacgtttcagctaaaagttctcctggttatgttggtggatatagtgttaataagagacagtcaaatacaggaattgctgcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
RRM_1

Protein Analysis

146

Amino Acids

14.27

Weight (kDa)

6.01

Isoelectric Point (pI)

32.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031017)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0036728.1_g000001 Rmu_ssc0000286.1_g000023

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 61
AclWI GGATC 2 cut(s) 275, 288
AcsI RAATTY 1 cut(s) 301
AfaI GTAC 1 cut(s) 187
AfiI CCNNNNNNNGG 1 cut(s) 86
AgsI TTSAA 2 cut(s) 214, 247
AjnI CCWGG 2 cut(s) 319, 379
AluBI AGCT 2 cut(s) 353, 368
AluI AGCT 2 cut(s) 353, 368
Alw26I GTCTC 1 cut(s) 406
AlwI GGATC 2 cut(s) 275, 288
AlwNI CAGNNNCTG 1 cut(s) 356
AoxI GGCC 2 cut(s) 196, 317
ApeKI GCWGC 2 cut(s) 350, 434
ApoI RAATTY 1 cut(s) 301
AspS9I GGNCC 4 cut(s) 18, 197, 317, 323
AsuHPI GGTGA 2 cut(s) 69, 149
AvaII GGWCC 2 cut(s) 18, 323
BaeI ACNNNNGTAYC 2 cut(s) 177, 210
BbsI GAAGAC 2 cut(s) 57, 198
BbvI GCAGC 2 cut(s) 362, 421
BccI CCATC 2 cut(s) 230, 308
BciT130I CCWGG 2 cut(s) 321, 381
BcoDI GTCTC 1 cut(s) 406
BfaI CTAG 1 cut(s) 439
BisI GCNGC 2 cut(s) 351, 435
BlsI GCNGC 2 cut(s) 352, 436
Bme1390I CCNGG 2 cut(s) 321, 381
Bme18I GGWCC 2 cut(s) 18, 323
BmgT120I GGNCC 4 cut(s) 18, 197, 317, 323
BmiI GGNNCC 4 cut(s) 19, 133, 241, 325
BmrFI CCNGG 2 cut(s) 321, 381
BmrI ACTGGG 1 cut(s) 57
BmsI GCATC 1 cut(s) 227
BmuI ACTGGG 1 cut(s) 57
BpiI GAAGAC 2 cut(s) 57, 198
BpuEI CTTGAG 1 cut(s) 66
Bsc4I CCNNNNNNNGG 1 cut(s) 86
Bse118I RCCGGY 1 cut(s) 134
Bse1I ACTGG 2 cut(s) 52, 62
BseBI CCWGG 2 cut(s) 321, 381
BseLI CCNNNNNNNGG 1 cut(s) 86
BseNI ACTGG 2 cut(s) 52, 62
BseXI GCAGC 2 cut(s) 362, 421
BsgI GTGCAG 1 cut(s) 369
BshFI GGCC 2 cut(s) 198, 319
BsiSI CCGG 1 cut(s) 135
BslFI GGGAC 1 cut(s) 31
BslI CCNNNNNNNGG 1 cut(s) 86
BsmAI GTCTC 1 cut(s) 406
BsmFI GGGAC 1 cut(s) 31
BsnI GGCC 2 cut(s) 198, 319
Bsp143I GATC 2 cut(s) 280, 293
BspACI CCGC 1 cut(s) 61
BspANI GGCC 2 cut(s) 198, 319
BspLI GGNNCC 4 cut(s) 19, 133, 241, 325
BspPI GGATC 2 cut(s) 275, 288
BsrFI RCCGGY 1 cut(s) 134
BsrI ACTGG 2 cut(s) 52, 62
BssAI RCCGGY 1 cut(s) 134
BssMI GATC 2 cut(s) 280, 293
Bst2UI CCWGG 2 cut(s) 321, 381
Bst4CI ACNGT 3 cut(s) 182, 260, 417
BstKTI GATC 2 cut(s) 283, 296
BstMAI GTCTC 1 cut(s) 406
BstMBI GATC 2 cut(s) 280, 293
BstMWI GCNNNNNNNGC 2 cut(s) 39, 316
BstNI CCWGG 2 cut(s) 321, 381
BstSCI CCNGG 2 cut(s) 319, 379
BstV1I GCAGC 2 cut(s) 362, 421
BstV2I GAAGAC 2 cut(s) 57, 198
BstX2I RGATCY 1 cut(s) 280
BstYI RGATCY 1 cut(s) 280
BsuRI GGCC 2 cut(s) 198, 319
BtsI GCAGTG 1 cut(s) 352
BtsIMutI CAGTG 2 cut(s) 187, 352
CaiI CAGNNNCTG 1 cut(s) 356
Cfr10I RCCGGY 1 cut(s) 134
Cfr13I GGNCC 4 cut(s) 18, 197, 317, 323
CseI GACGC 1 cut(s) 192
Csp6I GTAC 1 cut(s) 186
CviJI RGCY 6 cut(s) 134, 198, 242, 319, 353, 368
CviKI_1 RGCY 6 cut(s) 134, 198, 242, 319, 353, 368
CviQI GTAC 1 cut(s) 186
DpnI GATC 2 cut(s) 282, 295
DpnII GATC 2 cut(s) 280, 293
Eco47I GGWCC 2 cut(s) 18, 323
EcoO109I RGGNCCY 1 cut(s) 197
EcoRII CCWGG 2 cut(s) 319, 379
EcoT22I ATGCAT 1 cut(s) 220
FaiI YATR 7 cut(s) 129, 150, 171, 276, 336, 387, 399
FaqI GGGAC 1 cut(s) 31
Fnu4HI GCNGC 2 cut(s) 351, 435
Fsp4HI GCNGC 2 cut(s) 351, 435
FspBI CTAG 1 cut(s) 439
GluI GCNGC 2 cut(s) 351, 435
HaeIII GGCC 2 cut(s) 198, 319
HapII CCGG 1 cut(s) 135
HgaI GACGC 1 cut(s) 192
HincII GTYRAC 1 cut(s) 55
HindII GTYRAC 1 cut(s) 55
HinfI GANTC 1 cut(s) 118
HpaI GTTAAC 1 cut(s) 55
HpaII CCGG 1 cut(s) 135
HphI GGTGA 2 cut(s) 69, 149
Hpy166II GTNNAC 1 cut(s) 55
Hpy188I TCNGA 2 cut(s) 307, 358
Hpy188III TCNNGA 1 cut(s) 9
Hpy8I GTNNAC 1 cut(s) 55
HpyAV CCTTC 2 cut(s) 168, 253
HpyCH4III ACNGT 3 cut(s) 182, 260, 417
HpyCH4IV ACGT 1 cut(s) 360
HpyCH4V TGCA 2 cut(s) 218, 350
HpyF10VI GCNNNNNNNGC 2 cut(s) 39, 316
HpySE526I ACGT 1 cut(s) 360
KspAI GTTAAC 1 cut(s) 55
Kzo9I GATC 2 cut(s) 280, 293
LmnI GCTCC 2 cut(s) 131, 239
LpnPI CCDG 9 cut(s) 33, 43, 148, 213, 306, 333, 366, 393, 411
Lsp1109I GCAGC 2 cut(s) 362, 421
LweI GCATC 1 cut(s) 227
MaeI CTAG 1 cut(s) 439
MaeII ACGT 1 cut(s) 360
MalI GATC 2 cut(s) 282, 295
MboI GATC 2 cut(s) 280, 293
MboII GAAGA 2 cut(s) 57, 198
MflI RGATCY 1 cut(s) 280
MluCI AATT 3 cut(s) 72, 301, 429
MnlI CCTC 5 cut(s) 20, 83, 90, 158, 307
Mph1103I ATGCAT 1 cut(s) 220
MseI TTAA 2 cut(s) 54, 405
MspI CCGG 1 cut(s) 135
MspR9I CCNGG 2 cut(s) 321, 381
MvaI CCWGG 2 cut(s) 321, 381
MwoI GCNNNNNNNGC 2 cut(s) 39, 316
NdeII GATC 2 cut(s) 280, 293
NlaIV GGNNCC 4 cut(s) 19, 133, 241, 325
NsiI ATGCAT 1 cut(s) 220
PfeI GAWTC 1 cut(s) 118
PkrI GCNGC 2 cut(s) 352, 436
Psp6I CCWGG 2 cut(s) 319, 379
PspGI CCWGG 2 cut(s) 319, 379
PspN4I GGNNCC 4 cut(s) 19, 133, 241, 325
PspPI GGNCC 4 cut(s) 18, 197, 317, 323
PstNI CAGNNNCTG 1 cut(s) 356
PsuI RGATCY 1 cut(s) 280
RsaI GTAC 1 cut(s) 187
RsaNI GTAC 1 cut(s) 186
SaqAI TTAA 2 cut(s) 54, 405
SatI GCNGC 2 cut(s) 351, 435
Sau3AI GATC 2 cut(s) 280, 293
Sau96I GGNCC 4 cut(s) 18, 197, 317, 323
ScrFI CCNGG 2 cut(s) 321, 381
SetI ASST 5 cut(s) 82, 88, 355, 363, 370
SfaNI GCATC 1 cut(s) 227
SinI GGWCC 2 cut(s) 18, 323
SmlI CTYRAG 1 cut(s) 81
SmoI CTYRAG 1 cut(s) 81
Sse9I AATT 3 cut(s) 72, 301, 429
SsiI CCGC 1 cut(s) 61
SspMI CTAG 1 cut(s) 439
StyD4I CCNGG 2 cut(s) 319, 379
TaaI ACNGT 3 cut(s) 182, 260, 417
TaiI ACGT 1 cut(s) 363
TasI AATT 3 cut(s) 72, 301, 429
TfiI GAWTC 1 cut(s) 118
Tru1I TTAA 2 cut(s) 54, 405
Tru9I TTAA 2 cut(s) 54, 405
TscAI CASTG 2 cut(s) 187, 352
TseI GCWGC 2 cut(s) 350, 434
TspDTI ATGAA 1 cut(s) 198
TspRI CASTG 2 cut(s) 187, 352
VpaK11BI GGWCC 2 cut(s) 18, 323
XapI RAATTY 1 cut(s) 301
XspI CTAG 1 cut(s) 439
Zsp2I ATGCAT 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.