Rmu_ssc0000295.1_g000049

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000295.1
OG0023026
Physical Location & Seq
Reverse (-)
194841 .. 195719
879 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 387 bp
atgcgacgccatatggacaaggcactcagattggagtatatgtcgattaagaatgcaagagagctatgggtagcgctagaagagcgctttgacaatgtcaaagattccctcctccttgacttgaaggttcaatggaacaacctgcgctttgctgatttcaagtctgtagctgaatataattcagaagctcttcgcatacagtccatgttgaggttttgtggacaacctgaaggaaaccgcaagtttggtgtggatacacgtggtggtaatcccacacgtgggagagggggtcgtgaagaagaagaagatggtggagatgtcaatctcaccatagaggacttcaaagttgaagatgaattgcacaaggatgcagcagactttgattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

128

Amino Acids

14.88

Weight (kDa)

5.05

Isoelectric Point (pI)

49.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023026)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004071.1_g000007 Rmu_sc0004350.1_g000012 Rmu_sc0011292.1_g000003 Rmu_ssc0000295.1_g000049

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 150
AciI CCGC 1 cut(s) 238
AcuI CTGAAG 1 cut(s) 249
AcvI CACGTG 2 cut(s) 260, 278
AcyI GRCGYC 1 cut(s) 7
AdeI CACNNNGTG 1 cut(s) 263
AfeI AGCGCT 2 cut(s) 75, 86
AfiI CCNNNNNNNGG 3 cut(s) 210, 278, 279
AflIII ACRYGT 2 cut(s) 257, 275
AgsI TTSAA 5 cut(s) 124, 131, 160, 343, 350
AluBI AGCT 3 cut(s) 64, 170, 188
AluI AGCT 3 cut(s) 64, 170, 188
Aor51HI AGCGCT 2 cut(s) 75, 86
ApeKI GCWGC 1 cut(s) 371
Asp700I GAANNNNTTC 1 cut(s) 189
AspLEI GCGC 3 cut(s) 76, 87, 147
AsuHPI GGTGA 1 cut(s) 319
BbrPI CACGTG 2 cut(s) 260, 278
BbvI GCAGC 1 cut(s) 383
BccI CCATC 1 cut(s) 302
BciVI GTATCC 1 cut(s) 247
BfaI CTAG 1 cut(s) 77
BfmI CTRYAG 1 cut(s) 165
BfoI RGCGCY 2 cut(s) 77, 88
BfuAI ACCTGC 1 cut(s) 150
BfuI GTATCC 1 cut(s) 247
BisI GCNGC 1 cut(s) 372
BlsI GCNGC 1 cut(s) 373
BmsI GCATC 1 cut(s) 358
BsaAI YACGTR 2 cut(s) 260, 278
BsaBI GATNNNNATC 1 cut(s) 321
BsaHI GRCGYC 1 cut(s) 7
BsaXI ACNNNNNCTCC 4 cut(s) 26, 56, 274, 304
Bsc4I CCNNNNNNNGG 3 cut(s) 210, 278, 279
Bse8I GATNNNNATC 1 cut(s) 321
BseGI GGATG 1 cut(s) 373
BseJI GATNNNNATC 1 cut(s) 321
BseLI CCNNNNNNNGG 3 cut(s) 210, 278, 279
BseMII CTCAG 1 cut(s) 40
BseRI GAGGAG 1 cut(s) 101
BseXI GCAGC 1 cut(s) 383
BslI CCNNNNNNNGG 3 cut(s) 210, 278, 279
BsmI GAATGC 1 cut(s) 58
BspACI CCGC 1 cut(s) 238
BspCNI CTCAG 1 cut(s) 39
BspMI ACCTGC 1 cut(s) 150
BspQI GCTCTTC 2 cut(s) 75, 195
BssNI GRCGYC 1 cut(s) 7
Bst4CI ACNGT 1 cut(s) 201
Bst6I CTCTTC 2 cut(s) 75, 195
BstACI GRCGYC 1 cut(s) 7
BstBAI YACGTR 2 cut(s) 260, 278
BstDEI CTNAG 1 cut(s) 26
BstF5I GGATG 1 cut(s) 373
BstH2I RGCGCY 2 cut(s) 77, 88
BstHHI GCGC 3 cut(s) 76, 87, 147
BstMWI GCNNNNNNNGC 1 cut(s) 82
BstSFI CTRYAG 1 cut(s) 165
BstV1I GCAGC 1 cut(s) 383
BsuI GTATCC 1 cut(s) 247
BtsCI GGATG 1 cut(s) 373
BveI ACCTGC 1 cut(s) 150
CfoI GCGC 3 cut(s) 76, 87, 147
CseI GACGC 1 cut(s) 15
CviAII CATG 1 cut(s) 205
CviJI RGCY 3 cut(s) 64, 170, 188
CviKI_1 RGCY 3 cut(s) 64, 170, 188
DdeI CTNAG 1 cut(s) 26
DraIII CACNNNGTG 1 cut(s) 263
Eam1104I CTCTTC 2 cut(s) 75, 195
EarI CTCTTC 2 cut(s) 75, 195
Eco47III AGCGCT 2 cut(s) 75, 86
Eco57I CTGAAG 1 cut(s) 249
Eco72I CACGTG 2 cut(s) 260, 278
FaeI CATG 1 cut(s) 208
FaiI YATR 9 cut(s) 12, 14, 39, 41, 67, 177, 197, 206, 332
FatI CATG 1 cut(s) 204
FauNDI CATATG 1 cut(s) 12
Fnu4HI GCNGC 1 cut(s) 372
FokI GGATG 1 cut(s) 380
Fsp4HI GCNGC 1 cut(s) 372
FspBI CTAG 1 cut(s) 77
GlaI GCGC 3 cut(s) 75, 86, 146
GluI GCNGC 1 cut(s) 372
HaeII RGCGCY 2 cut(s) 77, 88
HgaI GACGC 1 cut(s) 15
HhaI GCGC 3 cut(s) 76, 87, 147
Hin1I GRCGYC 1 cut(s) 7
Hin1II CATG 1 cut(s) 208
Hin6I GCGC 3 cut(s) 74, 85, 145
HinP1I GCGC 3 cut(s) 74, 85, 145
HinfI GANTC 1 cut(s) 104
HphI GGTGA 1 cut(s) 319
Hpy166II GTNNAC 1 cut(s) 221
Hpy188I TCNGA 2 cut(s) 29, 184
Hpy188III TCNNGA 1 cut(s) 293
Hpy8I GTNNAC 1 cut(s) 221
Hpy99I CGWCG 1 cut(s) 9
HpyAV CCTTC 2 cut(s) 118, 224
HpyCH4III ACNGT 1 cut(s) 201
HpyCH4IV ACGT 2 cut(s) 259, 277
HpyCH4V TGCA 3 cut(s) 56, 361, 371
HpyF10VI GCNNNNNNNGC 1 cut(s) 82
HpyF3I CTNAG 1 cut(s) 26
HpySE526I ACGT 2 cut(s) 259, 277
Hsp92I GRCGYC 1 cut(s) 7
Hsp92II CATG 1 cut(s) 208
HspAI GCGC 3 cut(s) 74, 85, 145
LguI GCTCTTC 2 cut(s) 75, 195
LpnPI CCDG 2 cut(s) 155, 240
Lsp1109I GCAGC 1 cut(s) 383
LweI GCATC 1 cut(s) 358
MaeI CTAG 1 cut(s) 77
MaeII ACGT 2 cut(s) 259, 277
MboII GAAGA 7 cut(s) 92, 182, 308, 311, 314, 317, 362
MluCI AATT 2 cut(s) 178, 356
MnlI CCTC 5 cut(s) 119, 122, 204, 278, 328
MroXI GAANNNNTTC 1 cut(s) 189
MseI TTAA 1 cut(s) 48
MslI CAYNNNNRTG 1 cut(s) 366
Mva1269I GAATGC 1 cut(s) 58
MwoI GCNNNNNNNGC 1 cut(s) 82
NdeI CATATG 1 cut(s) 12
NlaIII CATG 1 cut(s) 208
PciSI GCTCTTC 2 cut(s) 75, 195
PctI GAATGC 1 cut(s) 58
PdmI GAANNNNTTC 1 cut(s) 189
PfeI GAWTC 1 cut(s) 104
PflFI GACNNNGTC 1 cut(s) 95
PkrI GCNGC 1 cut(s) 373
PmaCI CACGTG 2 cut(s) 260, 278
PmlI CACGTG 2 cut(s) 260, 278
Ppu21I YACGTR 2 cut(s) 260, 278
PspCI CACGTG 2 cut(s) 260, 278
PsyI GACNNNGTC 1 cut(s) 95
RseI CAYNNNNRTG 1 cut(s) 366
SapI GCTCTTC 2 cut(s) 75, 195
SaqAI TTAA 1 cut(s) 48
SatI GCNGC 1 cut(s) 372
SetI ASST 9 cut(s) 66, 129, 144, 172, 190, 215, 229, 262, 280
SfaNI GCATC 1 cut(s) 358
SfcI CTRYAG 1 cut(s) 165
SmiMI CAYNNNNRTG 1 cut(s) 366
Sse9I AATT 2 cut(s) 178, 356
SsiI CCGC 1 cut(s) 238
SspMI CTAG 1 cut(s) 77
TaaI ACNGT 1 cut(s) 201
TaiI ACGT 2 cut(s) 262, 280
TaqI TCGA 1 cut(s) 44
TasI AATT 2 cut(s) 178, 356
TfiI GAWTC 1 cut(s) 104
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TseI GCWGC 1 cut(s) 371
TspDTI ATGAA 1 cut(s) 369
Tth111I GACNNNGTC 1 cut(s) 95
XmnI GAANNNNTTC 1 cut(s) 189
XspI CTAG 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.