Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000319.1

Orthogroup ID

OG0028643

Physical Location & Seq

Genomic Coordinates Forward (+)

32504 .. 34503

Gene Structure 2000 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ctgctagttgacccccatgatcagcagtcaattgctgatgcccttctgaacctcgtttcggataagcatctttgggcaagatgcaggcagaatggactgaaaaacattcaccttttctcatggccagagcattgtaagacctacttatctcgcataaccagttgcaaaccaaggcagccacaatggcgaagaactgccgctgaaattgattcttcaggatcagattcacctggtgattccttaagagatatacaagatatatctttgaacttgaagctctctttggatggtgagaaaattgaaggggctggatctcttgataatgctttagataatgatgcagctgaaggaaaagtaaaagaagagaatgcggttttgacaatgtcaaagggtgttctagagggctgtcaaaaggctggtgccacagagaaagaagagaacactggggctggtaaatttcctgcactgaggaaaaggaagcatgtatttgtaattgctgtggattgtgatacaacctcagagttcagtgaaattgttgaaaaggttattgagacagtatcaaaggaaaaggatgcaggacctataggattcatactgtcaacagcctatcccatatcagagatacagtctcttttggtctcagggggtttgagcccatcacagtttgatggttttatatgcagcagtggtggtgagctctattatccagcttcaagctctgaggatagtccttctgggcttccctttgtggtagacttggattatcgttcacacactgaatatcgttggggtggagacggtttgagaaagactttggttcgttgggtcgcttctttcaatgagaaaaaaggagacggacaagttgcagcagatgaatcaggaacaactaagcattgctatgcgtttattgtgaaggatccagcagtgattccccctgttaaggaactccggaaaatgatgagaattcaggctcttcgatgcaatgttgtatattctcagaatggtacgaggctgaaggtcatccctgtgttggcttctagatcacaagccctcaggtatctgtatgtccgttggggattggacttgtcaaacattgttacctttgtgggagaactaggtgacacagattacgaaggcttgcttggtggtgtacacaagactgttatattgaagggagtaggtaccagtgctcgtaagcttcatgctaaccggaactttcctttggaacatgtccttccagtcgacaatcccaatgttgttcaaagtgaaggatgctctgataaagacattcgagcatcactggtgaaactaaggattctcaaggggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0007275 GO:0008150 GO:0008194 GO:0009555 GO:0009653 GO:0009987 GO:0010208 GO:0010927 GO:0016020 GO:0016043 GO:0016740 GO:0016757 GO:0016758 GO:0022607 GO:0030198 GO:0032501 GO:0032502 GO:0032989 GO:0035251 GO:0043062 GO:0044085 GO:0044464 GO:0045229 GO:0046524 GO:0046527 GO:0046903 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0071836 GO:0071840 GO:0071944 GO:0085029

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glycos_transf_1 S6PP Sucrose_synth

Protein Analysis

442

Amino Acids

48.46

Weight (kDa)

6.61

Isoelectric Point (pI)

46.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S6PP	PF05116	183 - 375	5.2e-11	Sucrose-6F-phosphate phosphohydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028643)

Species	Orthologous Gene IDs
malus_domestica	MD08G1156900.v1.1
rosa_multiflora	Rmu_ssc0000319.1_g000007

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1181
AccB1I	GGYRCC	2 cut(s)	419, 1181
AccI	GTMKAC	2 cut(s)	753, 1242
AccIII	TCCGGA	1 cut(s)	948
AciI	CCGC	2 cut(s)	198, 371
AclWI	GGATC	4 cut(s)	226, 319, 911, 924
AcoI	YGGCCR	1 cut(s)	122
AcsI	RAATTY	2 cut(s)	455, 963
AcuI	CTGAAG	3 cut(s)	198, 366, 1034
AdeI	CACNNNGTG	1 cut(s)	233
AfaI	GTAC	3 cut(s)	1006, 1152, 1183
AfiI	CCNNNNNNNGG	3 cut(s)	58, 940, 1030
AflII	CTTAAG	1 cut(s)	241
AflIII	ACRYGT	1 cut(s)	1228
AgsI	TTSAA	8 cut(s)	268, 274, 302, 539, 714, 838, 1171, 1262
AjnI	CCWGG	1 cut(s)	229
AjuI	GAANNNNNNNTTGG	6 cut(s)	266, 298, 1125, 1157, 1205, 1237
AluBI	AGCT	6 cut(s)	277, 344, 697, 710, 717, 1198
AluI	AGCT	6 cut(s)	277, 344, 697, 710, 717, 1198
Alw21I	GWGCWC	2 cut(s)	699, 1192
Alw26I	GTCTC	5 cut(s)	545, 633, 643, 789, 846
AlwI	GGATC	4 cut(s)	226, 319, 911, 924
Aor13HI	TCCGGA	1 cut(s)	948
AoxI	GGCC	1 cut(s)	122
ApeKI	GCWGC	4 cut(s)	175, 341, 681, 866
ApoI	RAATTY	2 cut(s)	455, 963
Asp718I	GGTACC	1 cut(s)	1181
AspS9I	GGNCC	1 cut(s)	578
AsuHPI	GGTGA	7 cut(s)	101, 219, 245, 302, 704, 1130, 1315
AvaII	GGWCC	1 cut(s)	578
AxyI	CCTNAGG	1 cut(s)	1052
BalI	TGGCCA	1 cut(s)	124
BamHI	GGATCC	1 cut(s)	916
BanI	GGYRCC	2 cut(s)	419, 1181
BanII	GRGCYC	2 cut(s)	656, 699
Bbv12I	GWGCWC	2 cut(s)	699, 1192
BbvI	GCAGC	4 cut(s)	187, 353, 693, 878
BccI	CCATC	3 cut(s)	281, 662, 664
BciT130I	CCWGG	1 cut(s)	231
BclI	TGATCA	1 cut(s)	19
BcoDI	GTCTC	5 cut(s)	545, 633, 643, 789, 846
BfaI	CTAG	4 cut(s)	5, 398, 1038, 1115
BfmI	CTRYAG	1 cut(s)	582
BfrI	CTTAAG	1 cut(s)	241
BglI	GCCNNNNNGGC	1 cut(s)	184
BisI	GCNGC	5 cut(s)	176, 198, 342, 682, 867
BlsI	GCNGC	5 cut(s)	177, 199, 343, 683, 868
Bme1390I	CCNGG	1 cut(s)	231
Bme18I	GGWCC	1 cut(s)	578
BmgT120I	GGNCC	1 cut(s)	578
BmiI	GGNNCC	3 cut(s)	421, 918, 1183
BmrFI	CCNGG	1 cut(s)	231
BmrI	ACTGGG	1 cut(s)	453
BmsI	GCATC	8 cut(s)	28, 71, 76, 328, 562, 968, 1262, 1304
BmuI	ACTGGG	1 cut(s)	453
BpuEI	CTTGAG	1 cut(s)	1304
BsaBI	GATNNNNATC	1 cut(s)	66
BsaI	GGTCTC	1 cut(s)	643
BsaJI	CCNNGG	1 cut(s)	170
BsaWI	WCCGGW	2 cut(s)	948, 1209
Bsc4I	CCNNNNNNNGG	3 cut(s)	58, 940, 1030
Bse1I	ACTGG	5 cut(s)	159, 448, 1185, 1238, 1305
Bse21I	CCTNAGG	1 cut(s)	1052
Bse3DI	GCAATG	2 cut(s)	892, 988
Bse8I	GATNNNNATC	1 cut(s)	66
BseAI	TCCGGA	1 cut(s)	948
BseBI	CCWGG	1 cut(s)	231
BseDI	CCNNGG	1 cut(s)	170
BseGI	GGATG	4 cut(s)	292, 577, 1020, 1277
BseJI	GATNNNNATC	1 cut(s)	66
BseLI	CCNNNNNNNGG	3 cut(s)	58, 940, 1030
BseMI	GCAATG	2 cut(s)	892, 988
BseMII	CTCAG	6 cut(s)	458, 531, 654, 711, 1010, 1066
BseNI	ACTGG	5 cut(s)	159, 448, 1185, 1238, 1305
BseXI	GCAGC	4 cut(s)	187, 353, 693, 878
BsgI	GTGCAG	1 cut(s)	447
BshFI	GGCC	1 cut(s)	124
BshNI	GGYRCC	2 cut(s)	419, 1181
BsiHKAI	GWGCWC	2 cut(s)	699, 1192
BsiSI	CCGG	2 cut(s)	949, 1210
BslI	CCNNNNNNNGG	3 cut(s)	58, 940, 1030
BsmAI	GTCTC	5 cut(s)	545, 633, 643, 789, 846
BsmBI	CGTCTC	2 cut(s)	789, 846
BsmI	GAATGC	1 cut(s)	373
BsnI	GGCC	1 cut(s)	124
Bso31I	GGTCTC	1 cut(s)	643
Bsp1286I	GDGCHC	3 cut(s)	656, 699, 1192
Bsp13I	TCCGGA	1 cut(s)	948
Bsp1407I	TGTACA	1 cut(s)	1150
Bsp143I	GATC	5 cut(s)	19, 218, 311, 916, 1040
BspACI	CCGC	2 cut(s)	198, 371
BspANI	GGCC	1 cut(s)	124
BspCNI	CTCAG	6 cut(s)	459, 530, 653, 712, 1009, 1065
BspEI	TCCGGA	1 cut(s)	948
BspLI	GGNNCC	3 cut(s)	421, 918, 1183
BspPI	GGATC	4 cut(s)	226, 319, 911, 924
BspQI	GCTCTTC	1 cut(s)	978
BspT107I	GGYRCC	2 cut(s)	419, 1181
BspTI	CTTAAG	1 cut(s)	241
BspTNI	GGTCTC	1 cut(s)	643
BsrDI	GCAATG	2 cut(s)	892, 988
BsrGI	TGTACA	1 cut(s)	1150
BsrI	ACTGG	5 cut(s)	159, 448, 1185, 1238, 1305
BssECI	CCNNGG	1 cut(s)	170
BssMI	GATC	5 cut(s)	19, 218, 311, 916, 1040
BssT1I	CCWWGG	1 cut(s)	170
Bst2UI	CCWGG	1 cut(s)	231
Bst4CI	ACNGT	6 cut(s)	556, 597, 627, 663, 800, 1162
Bst6I	CTCTTC	3 cut(s)	357, 429, 978
BstAFI	CTTAAG	1 cut(s)	241
BstAUI	TGTACA	1 cut(s)	1150
BstC8I	GCNNGC	2 cut(s)	86, 1139
BstDEI	CTNAG	8 cut(s)	467, 517, 640, 720, 888, 996, 1052, 1310
BstF5I	GGATG	4 cut(s)	292, 577, 1020, 1277
BstKTI	GATC	5 cut(s)	22, 221, 314, 919, 1043
BstMAI	GTCTC	5 cut(s)	545, 633, 643, 789, 846
BstMBI	GATC	5 cut(s)	19, 218, 311, 916, 1040
BstMWI	GCNNNNNNNGC	1 cut(s)	184
BstNI	CCWGG	1 cut(s)	231
BstNSI	RCATGY	2 cut(s)	485, 1232
BstSCI	CCNGG	1 cut(s)	229
BstSFI	CTRYAG	1 cut(s)	582
BstV1I	GCAGC	4 cut(s)	187, 353, 693, 878
BstX2I	RGATCY	2 cut(s)	311, 916
BstYI	RGATCY	2 cut(s)	311, 916
Bsu36I	CCTNAGG	1 cut(s)	1052
BsuRI	GGCC	1 cut(s)	124
BtsCI	GGATG	4 cut(s)	292, 577, 1020, 1277
BtsI	GCAGTG	2 cut(s)	691, 930
BtsIMutI	CAGTG	8 cut(s)	441, 464, 532, 691, 774, 930, 1192, 1298
Cac8I	GCNNGC	2 cut(s)	86, 1139
Cfr13I	GGNCC	1 cut(s)	578
CsiI	ACCWGGT	1 cut(s)	229
Csp6I	GTAC	3 cut(s)	1005, 1151, 1182
CviAII	CATG	5 cut(s)	17, 120, 482, 1202, 1229
CviQI	GTAC	3 cut(s)	1005, 1151, 1182
DdeI	CTNAG	8 cut(s)	467, 517, 640, 720, 888, 996, 1052, 1310
DpnI	GATC	5 cut(s)	21, 220, 313, 918, 1042
DpnII	GATC	5 cut(s)	19, 218, 311, 916, 1040
DraIII	CACNNNGTG	1 cut(s)	233
EaeI	YGGCCR	1 cut(s)	122
Eam1104I	CTCTTC	3 cut(s)	357, 429, 978
EarI	CTCTTC	3 cut(s)	357, 429, 978
Ecl136II	GAGCTC	1 cut(s)	697
Eco130I	CCWWGG	1 cut(s)	170
Eco24I	GRGCYC	2 cut(s)	656, 699
Eco31I	GGTCTC	1 cut(s)	643
Eco47I	GGWCC	1 cut(s)	578
Eco53kI	GAGCTC	1 cut(s)	697
Eco57I	CTGAAG	3 cut(s)	198, 366, 1034
Eco81I	CCTNAGG	1 cut(s)	1052
EcoICRI	GAGCTC	1 cut(s)	697
EcoO109I	RGGNCCY	1 cut(s)	578
EcoRI	GAATTC	1 cut(s)	963
EcoRII	CCWGG	1 cut(s)	229
EcoT14I	CCWWGG	1 cut(s)	170
EcoT38I	GRGCYC	2 cut(s)	656, 699
ErhI	CCWWGG	1 cut(s)	170
Esp3I	CGTCTC	2 cut(s)	789, 846
FaeI	CATG	5 cut(s)	20, 123, 485, 1205, 1232
FalI	AAGNNNNNCTT	4 cut(s)	128, 160, 1125, 1157
FatI	CATG	5 cut(s)	16, 119, 481, 1201, 1228
FbaI	TGATCA	1 cut(s)	19
FblI	GTMKAC	2 cut(s)	753, 1242
Fnu4HI	GCNGC	5 cut(s)	176, 198, 342, 682, 867
FokI	GGATG	4 cut(s)	299, 584, 1007, 1284
FriOI	GRGCYC	2 cut(s)	656, 699
Fsp4HI	GCNGC	5 cut(s)	176, 198, 342, 682, 867
FspBI	CTAG	4 cut(s)	5, 398, 1038, 1115
GluI	GCNGC	5 cut(s)	176, 198, 342, 682, 867
HaeIII	GGCC	1 cut(s)	124
HapII	CCGG	2 cut(s)	949, 1210
Hin1II	CATG	5 cut(s)	20, 123, 485, 1205, 1232
HincII	GTYRAC	3 cut(s)	10, 600, 1243
HindII	GTYRAC	3 cut(s)	10, 600, 1243
HindIII	AAGCTT	1 cut(s)	1196
HinfI	GANTC	7 cut(s)	209, 224, 236, 588, 875, 928, 1315
HpaII	CCGG	2 cut(s)	949, 1210
HphI	GGTGA	7 cut(s)	101, 219, 245, 302, 704, 1130, 1315
Hpy166II	GTNNAC	7 cut(s)	10, 600, 754, 770, 1151, 1153, 1243
Hpy188I	TCNGA	8 cut(s)	48, 61, 223, 520, 619, 721, 999, 1279
Hpy188III	TCNNGA	6 cut(s)	216, 317, 398, 879, 949, 1038
Hpy8I	GTNNAC	7 cut(s)	10, 600, 754, 770, 1151, 1153, 1243
HpyCH4III	ACNGT	6 cut(s)	556, 597, 627, 663, 800, 1162
HpyCH4V	TGCA	8 cut(s)	84, 165, 341, 464, 575, 681, 866, 981
HpyF10VI	GCNNNNNNNGC	1 cut(s)	184
HpyF3I	CTNAG	8 cut(s)	467, 517, 640, 720, 888, 996, 1052, 1310
Hsp92II	CATG	5 cut(s)	20, 123, 485, 1205, 1232
Kpn2I	TCCGGA	1 cut(s)	948
KpnI	GGTACC	1 cut(s)	1185
Ksp22I	TGATCA	1 cut(s)	19
Kzo9I	GATC	5 cut(s)	19, 218, 311, 916, 1040
LguI	GCTCTTC	1 cut(s)	978
Lsp1109I	GCAGC	4 cut(s)	187, 353, 693, 878
LweI	GCATC	8 cut(s)	28, 71, 76, 328, 562, 968, 1262, 1304
MabI	ACCWGGT	1 cut(s)	229
MaeI	CTAG	4 cut(s)	5, 398, 1038, 1115
MaeIII	GTNAC	2 cut(s)	1096, 1118
MalI	GATC	5 cut(s)	21, 220, 313, 918, 1042
MboI	GATC	5 cut(s)	19, 218, 311, 916, 1040
MboII	GAAGA	5 cut(s)	201, 204, 374, 446, 965
MfeI	CAATTG	1 cut(s)	30
MflI	RGATCY	2 cut(s)	311, 916
MhlI	GDGCHC	3 cut(s)	656, 699, 1192
MlsI	TGGCCA	1 cut(s)	124
MluCI	AATT	7 cut(s)	30, 204, 297, 455, 492, 531, 963
MluNI	TGGCCA	1 cut(s)	124
MnlI	CCTC	7 cut(s)	62, 394, 462, 526, 715, 1002, 1061
Mox20I	TGGCCA	1 cut(s)	124
MroI	TCCGGA	1 cut(s)	948
MscI	TGGCCA	1 cut(s)	124
MseI	TTAA	2 cut(s)	242, 939
MslI	CAYNNNNRTG	2 cut(s)	897, 1025
Msp20I	TGGCCA	1 cut(s)	124
MspA1I	CMGCKG	2 cut(s)	200, 344
MspCI	CTTAAG	1 cut(s)	241
MspI	CCGG	2 cut(s)	949, 1210
MspR9I	CCNGG	1 cut(s)	231
MunI	CAATTG	1 cut(s)	30
Mva1269I	GAATGC	1 cut(s)	373
MvaI	CCWGG	1 cut(s)	231
MwoI	GCNNNNNNNGC	1 cut(s)	184
NdeII	GATC	5 cut(s)	19, 218, 311, 916, 1040
NlaIII	CATG	5 cut(s)	20, 123, 485, 1205, 1232
NlaIV	GGNNCC	3 cut(s)	421, 918, 1183
NmuCI	GTSAC	1 cut(s)	1118
NspI	RCATGY	2 cut(s)	485, 1232
PciI	ACATGT	1 cut(s)	1228
PciSI	GCTCTTC	1 cut(s)	978
PctI	GAATGC	1 cut(s)	373
PfeI	GAWTC	7 cut(s)	209, 224, 236, 588, 875, 928, 1315
PflFI	GACNNNGTC	1 cut(s)	382
PkrI	GCNGC	5 cut(s)	177, 199, 343, 683, 868
PpuMI	RGGWCCY	1 cut(s)	578
PscI	ACATGT	1 cut(s)	1228
Psp124BI	GAGCTC	1 cut(s)	699
Psp5II	RGGWCCY	1 cut(s)	578
Psp6I	CCWGG	1 cut(s)	229
PspGI	CCWGG	1 cut(s)	229
PspN4I	GGNNCC	3 cut(s)	421, 918, 1183
PspPI	GGNCC	1 cut(s)	578
PspPPI	RGGWCCY	1 cut(s)	578
PsuI	RGATCY	2 cut(s)	311, 916
PsyI	GACNNNGTC	1 cut(s)	382
PvuII	CAGCTG	1 cut(s)	344
RsaI	GTAC	3 cut(s)	1006, 1152, 1183
RsaNI	GTAC	3 cut(s)	1005, 1151, 1182
RseI	CAYNNNNRTG	2 cut(s)	897, 1025
SacI	GAGCTC	1 cut(s)	699
SalI	GTCGAC	1 cut(s)	1241
SapI	GCTCTTC	1 cut(s)	978
SaqAI	TTAA	2 cut(s)	242, 939
SatI	GCNGC	5 cut(s)	176, 198, 342, 682, 867
Sau3AI	GATC	5 cut(s)	19, 218, 311, 916, 1040
Sau96I	GGNCC	1 cut(s)	578
ScrFI	CCNGG	1 cut(s)	231
SduI	GDGCHC	3 cut(s)	656, 699, 1192
SexAI	ACCWGGT	1 cut(s)	229
SfaNI	GCATC	8 cut(s)	28, 71, 76, 328, 562, 968, 1262, 1304
SfcI	CTRYAG	1 cut(s)	582
SinI	GGWCC	1 cut(s)	578
SmiMI	CAYNNNNRTG	2 cut(s)	897, 1025
SmlI	CTYRAG	2 cut(s)	241, 1319
SmoI	CTYRAG	2 cut(s)	241, 1319
Sse9I	AATT	7 cut(s)	30, 204, 297, 455, 492, 531, 963
SsiI	CCGC	2 cut(s)	198, 371
SspMI	CTAG	4 cut(s)	5, 398, 1038, 1115
SstI	GAGCTC	1 cut(s)	699
StyD4I	CCNGG	1 cut(s)	229
StyI	CCWWGG	1 cut(s)	170
TaaI	ACNGT	6 cut(s)	556, 597, 627, 663, 800, 1162
TaqI	TCGA	3 cut(s)	976, 1242, 1291
TasI	AATT	7 cut(s)	30, 204, 297, 455, 492, 531, 963
TatI	WGTACW	1 cut(s)	1150
TauI	GCSGC	1 cut(s)	200
TfiI	GAWTC	7 cut(s)	209, 224, 236, 588, 875, 928, 1315
Tru1I	TTAA	2 cut(s)	242, 939
Tru9I	TTAA	2 cut(s)	242, 939
TscAI	CASTG	8 cut(s)	448, 471, 532, 691, 781, 930, 1192, 1305
TseFI	GTSAC	1 cut(s)	1118
TseI	GCWGC	4 cut(s)	175, 341, 681, 866
Tsp45I	GTSAC	1 cut(s)	1118
TspDTI	ATGAA	3 cut(s)	580, 888, 1190
TspGWI	ACGGA	2 cut(s)	870, 1058
TspRI	CASTG	8 cut(s)	448, 471, 532, 691, 781, 930, 1192, 1305
Tth111I	GACNNNGTC	1 cut(s)	382
Vha464I	CTTAAG	1 cut(s)	241
VpaK11BI	GGWCC	1 cut(s)	578
XapI	RAATTY	2 cut(s)	455, 963
XbaI	TCTAGA	2 cut(s)	397, 1037
XceI	RCATGY	2 cut(s)	485, 1232
XmiI	GTMKAC	2 cut(s)	753, 1242
XspI	CTAG	4 cut(s)	5, 398, 1038, 1115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.