Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000338.1

Orthogroup ID

OG0029218

Physical Location & Seq

Genomic Coordinates Reverse (-)

9583 .. 11007

Gene Structure 1425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000338.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

atggttcttcaaagaaaggcagaagaggcaacaaatgctaccaagcgacttaaacaattgttggaagcacgcaaatctgttatacgtgacaactcggctaactcaaatgggcatactccagcaaactccaatggacatgcttcagctagccagggaaatgaaagatctttacaacggtggcttgatcatgagctggaagtcatggtgcatgtgtatgaagttcgtcatgaatatgagaagcaacaacaattgcgaaccgcactagaaaaggagttggccttgtttaagcaagcagatcagctttcttcagaagggcagggtagccaagtaggaaagagtggacattccagagtgttatccatgtcactggacgcacgaatggcaagaatagcttcacttgagaacatgctgagcatgtcttcgaatgctctcatggtgatggctacacagctgtcggaggcagaagatagggaccgaagtttaagtggtcgtggacgttggaaccaactgcgttcaatgggtgatgctaagaacttgcttcaatatatatttaacatcgctgcagaaacaaggtgcgtatacaacctagatcgaatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000022 GO:0000070 GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000819 GO:0000910 GO:0002376 GO:0002478 GO:0002495 GO:0002504 GO:0003674 GO:0003676 GO:0003677 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0005871 GO:0005874 GO:0005875 GO:0005876 GO:0006355 GO:0006810 GO:0006890 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0007059 GO:0008088 GO:0008089 GO:0008150 GO:0008574 GO:0009664 GO:0009832 GO:0009889 GO:0009891 GO:0009893 GO:0009937 GO:0009966 GO:0009987 GO:0010215 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010970 GO:0015630 GO:0016043 GO:0016192 GO:0016363 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019882 GO:0019884 GO:0019886 GO:0022402 GO:0022607 GO:0023051 GO:0030198 GO:0030496 GO:0030705 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0034399 GO:0042127 GO:0042546 GO:0042623 GO:0043062 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044421 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045171 GO:0045229 GO:0045893 GO:0045935 GO:0046907 GO:0048002 GO:0048193 GO:0048285 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051179 GO:0051225 GO:0051231 GO:0051234 GO:0051252 GO:0051254 GO:0051255 GO:0051256 GO:0051276 GO:0051301 GO:0051641 GO:0051649 GO:0060255 GO:0061640 GO:0065007 GO:0070013 GO:0070726 GO:0070925 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071840 GO:0080090 GO:0090307 GO:0097159 GO:0098813 GO:0098930 GO:0099080 GO:0099081 GO:0099111 GO:0099512 GO:0099513 GO:0140014 GO:1901363 GO:1902680 GO:1902850 GO:1903047 GO:1903506 GO:1903508 GO:1990939 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

199

Amino Acids

22.44

Weight (kDa)

9.09

Isoelectric Point (pI)

46.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029218)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g14280
rosa_multiflora	Rmu_ssc0000338.1_g000002

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	579
AciI	CCGC	1 cut(s)	258
AcuI	CTGAAG	2 cut(s)	126, 291
AgsI	TTSAA	3 cut(s)	11, 516, 542
AjnI	CCWGG	1 cut(s)	150
AluBI	AGCT	5 cut(s)	146, 193, 301, 392, 451
AluI	AGCT	5 cut(s)	146, 193, 301, 392, 451
AoxI	GGCC	1 cut(s)	276
ApeKI	GCWGC	1 cut(s)	560
Asp700I	GAANNNNTTC	1 cut(s)	391
AspS9I	GGNCC	1 cut(s)	472
AsuHPI	GGTGA	2 cut(s)	448, 533
AsuII	TTCGAA	1 cut(s)	422
AsuNHI	GCTAGC	1 cut(s)	146
AvaII	GGWCC	1 cut(s)	472
BbsI	GAAGAC	1 cut(s)	411
BbvI	GCAGC	1 cut(s)	547
BccI	CCATC	1 cut(s)	433
BciT130I	CCWGG	1 cut(s)	152
BclI	TGATCA	1 cut(s)	184
BfaI	CTAG	3 cut(s)	147, 263, 587
BfmI	CTRYAG	1 cut(s)	561
BglII	AGATCT	1 cut(s)	164
BisI	GCNGC	1 cut(s)	561
BlpI	GCTNAGC	1 cut(s)	410
BlsI	GCNGC	1 cut(s)	562
Bme1390I	CCNGG	1 cut(s)	152
Bme18I	GGWCC	1 cut(s)	472
BmgT120I	GGNCC	1 cut(s)	472
BmiI	GGNNCC	2 cut(s)	473, 503
BmrFI	CCNGG	1 cut(s)	152
BmsI	GCATC	1 cut(s)	514
BmtI	GCTAGC	1 cut(s)	150
BpiI	GAAGAC	1 cut(s)	411
BpmI	CTGGAG	1 cut(s)	102
Bpu1102I	GCTNAGC	1 cut(s)	410
Bpu14I	TTCGAA	1 cut(s)	422
BpuEI	CTTGAG	1 cut(s)	419
BsaAI	YACGTR	1 cut(s)	86
BsaJI	CCNNGG	1 cut(s)	151
Bse1I	ACTGG	1 cut(s)	372
BseBI	CCWGG	1 cut(s)	152
BseDI	CCNNGG	1 cut(s)	151
BseMII	CTCAG	1 cut(s)	401
BseNI	ACTGG	1 cut(s)	372
BseXI	GCAGC	1 cut(s)	547
BshFI	GGCC	1 cut(s)	278
BslFI	GGGAC	1 cut(s)	485
BsmFI	GGGAC	1 cut(s)	485
BsmI	GAATGC	1 cut(s)	430
BsnI	GGCC	1 cut(s)	278
Bsp119I	TTCGAA	1 cut(s)	422
Bsp143I	GATC	4 cut(s)	164, 184, 295, 589
Bsp1720I	GCTNAGC	1 cut(s)	410
BspACI	CCGC	1 cut(s)	258
BspANI	GGCC	1 cut(s)	278
BspCNI	CTCAG	1 cut(s)	402
BspHI	TCATGA	2 cut(s)	187, 226
BspLI	GGNNCC	2 cut(s)	473, 503
BspMAI	CTGCAG	1 cut(s)	565
BspOI	GCTAGC	1 cut(s)	150
BspT104I	TTCGAA	1 cut(s)	422
BsrI	ACTGG	1 cut(s)	372
BssECI	CCNNGG	1 cut(s)	151
BssMI	GATC	4 cut(s)	164, 184, 295, 589
BssNAI	GTATAC	1 cut(s)	580
Bst1107I	GTATAC	1 cut(s)	580
Bst2UI	CCWGG	1 cut(s)	152
Bst4CI	ACNGT	1 cut(s)	177
Bst6I	CTCTTC	1 cut(s)	18
BstAPI	GCANNNNNTGC	1 cut(s)	35
BstBAI	YACGTR	1 cut(s)	86
BstBI	TTCGAA	1 cut(s)	422
BstC8I	GCNNGC	3 cut(s)	70, 148, 291
BstDEI	CTNAG	2 cut(s)	410, 528
BstKTI	GATC	4 cut(s)	167, 187, 298, 592
BstMBI	GATC	4 cut(s)	164, 184, 295, 589
BstMWI	GCNNNNNNNGC	4 cut(s)	26, 35, 380, 389
BstNI	CCWGG	1 cut(s)	152
BstNSI	RCATGY	4 cut(s)	140, 212, 409, 418
BstSCI	CCNGG	1 cut(s)	150
BstSFI	CTRYAG	1 cut(s)	561
BstV1I	GCAGC	1 cut(s)	547
BstV2I	GAAGAC	1 cut(s)	411
BstX2I	RGATCY	1 cut(s)	164
BstXI	CCANNNNNNTGG	1 cut(s)	367
BstYI	RGATCY	1 cut(s)	164
BstZ17I	GTATAC	1 cut(s)	580
BsuRI	GGCC	1 cut(s)	278
BtgZI	GCGATG	1 cut(s)	541
BtsIMutI	CAGTG	1 cut(s)	365
Cac8I	GCNNGC	3 cut(s)	70, 148, 291
CciI	TCATGA	2 cut(s)	187, 226
Cfr13I	GGNCC	1 cut(s)	472
CseI	GACGC	1 cut(s)	380
CviAII	CATG	9 cut(s)	137, 188, 202, 209, 227, 361, 406, 415, 433
DdeI	CTNAG	2 cut(s)	410, 528
DpnI	GATC	4 cut(s)	166, 186, 297, 591
DpnII	GATC	4 cut(s)	164, 184, 295, 589
Eam1104I	CTCTTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	18
Eco47I	GGWCC	1 cut(s)	472
Eco57I	CTGAAG	2 cut(s)	126, 291
EcoRII	CCWGG	1 cut(s)	150
FaeI	CATG	9 cut(s)	140, 191, 205, 212, 230, 364, 409, 418, 436
FalI	AAGNNNNNCTT	2 cut(s)	376, 408
FaqI	GGGAC	1 cut(s)	485
FatI	CATG	9 cut(s)	136, 187, 201, 208, 226, 360, 405, 414, 432
FbaI	TGATCA	1 cut(s)	184
FblI	GTMKAC	1 cut(s)	579
Fnu4HI	GCNGC	1 cut(s)	561
Fsp4HI	GCNGC	1 cut(s)	561
FspBI	CTAG	3 cut(s)	147, 263, 587
GluI	GCNGC	1 cut(s)	561
GsuI	CTGGAG	1 cut(s)	102
HaeIII	GGCC	1 cut(s)	278
HgaI	GACGC	1 cut(s)	380
Hin1II	CATG	9 cut(s)	140, 191, 205, 212, 230, 364, 409, 418, 436
HinfI	GANTC	1 cut(s)	594
HphI	GGTGA	2 cut(s)	448, 533
Hpy166II	GTNNAC	3 cut(s)	341, 494, 580
Hpy188I	TCNGA	3 cut(s)	310, 457, 599
Hpy188III	TCNNGA	3 cut(s)	188, 227, 348
Hpy8I	GTNNAC	3 cut(s)	341, 494, 580
HpyAV	CCTTC	1 cut(s)	305
HpyCH4III	ACNGT	1 cut(s)	177
HpyCH4IV	ACGT	2 cut(s)	85, 496
HpyCH4V	TGCA	2 cut(s)	208, 563
HpyF10VI	GCNNNNNNNGC	4 cut(s)	26, 35, 380, 389
HpyF3I	CTNAG	2 cut(s)	410, 528
HpySE526I	ACGT	2 cut(s)	85, 496
Hsp92II	CATG	9 cut(s)	140, 191, 205, 212, 230, 364, 409, 418, 436
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	4 cut(s)	164, 184, 295, 589
LpnPI	CCDG	7 cut(s)	132, 137, 164, 179, 302, 353, 361
Lsp1109I	GCAGC	1 cut(s)	547
LweI	GCATC	1 cut(s)	514
MaeI	CTAG	3 cut(s)	147, 263, 587
MaeII	ACGT	2 cut(s)	85, 496
MaeIII	GTNAC	2 cut(s)	86, 363
MalI	GATC	4 cut(s)	166, 186, 297, 591
MboI	GATC	4 cut(s)	164, 184, 295, 589
MboII	GAAGA	4 cut(s)	35, 297, 411, 476
MfeI	CAATTG	2 cut(s)	56, 248
MflI	RGATCY	1 cut(s)	164
MluCI	AATT	2 cut(s)	56, 248
MmeI	TCCRAC	3 cut(s)	42, 435, 479
MnlI	CCTC	2 cut(s)	19, 451
MroXI	GAANNNNTTC	1 cut(s)	391
MseI	TTAA	4 cut(s)	51, 285, 482, 552
MslI	CAYNNNNRTG	3 cut(s)	213, 231, 437
MspA1I	CMGCKG	1 cut(s)	451
MspR9I	CCNGG	1 cut(s)	152
MunI	CAATTG	2 cut(s)	56, 248
Mva1269I	GAATGC	1 cut(s)	430
MvaI	CCWGG	1 cut(s)	152
MwoI	GCNNNNNNNGC	4 cut(s)	26, 35, 380, 389
NdeII	GATC	4 cut(s)	164, 184, 295, 589
NheI	GCTAGC	1 cut(s)	146
NlaIII	CATG	9 cut(s)	140, 191, 205, 212, 230, 364, 409, 418, 436
NlaIV	GGNNCC	2 cut(s)	473, 503
NmeAIII	GCCGAG	1 cut(s)	74
NmuCI	GTSAC	2 cut(s)	86, 363
NspI	RCATGY	4 cut(s)	140, 212, 409, 418
NspV	TTCGAA	1 cut(s)	422
PagI	TCATGA	2 cut(s)	187, 226
PctI	GAATGC	1 cut(s)	430
PdmI	GAANNNNTTC	1 cut(s)	391
PfeI	GAWTC	1 cut(s)	594
PkrI	GCNGC	1 cut(s)	562
Ppu21I	YACGTR	1 cut(s)	86
Psp6I	CCWGG	1 cut(s)	150
PspGI	CCWGG	1 cut(s)	150
PspN4I	GGNNCC	2 cut(s)	473, 503
PspPI	GGNCC	1 cut(s)	472
PstI	CTGCAG	1 cut(s)	565
PsuI	RGATCY	1 cut(s)	164
PvuII	CAGCTG	1 cut(s)	451
RseI	CAYNNNNRTG	3 cut(s)	213, 231, 437
SaqAI	TTAA	4 cut(s)	51, 285, 482, 552
SatI	GCNGC	1 cut(s)	561
Sau3AI	GATC	4 cut(s)	164, 184, 295, 589
Sau96I	GGNCC	1 cut(s)	472
ScrFI	CCNGG	1 cut(s)	152
SetI	ASST	9 cut(s)	88, 148, 195, 303, 394, 453, 499, 575, 588
SfaNI	GCATC	1 cut(s)	514
SfcI	CTRYAG	1 cut(s)	561
SfuI	TTCGAA	1 cut(s)	422
SinI	GGWCC	1 cut(s)	472
SmiMI	CAYNNNNRTG	3 cut(s)	213, 231, 437
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
Sse9I	AATT	2 cut(s)	56, 248
SsiI	CCGC	1 cut(s)	258
SspMI	CTAG	3 cut(s)	147, 263, 587
StyD4I	CCNGG	1 cut(s)	150
TaaI	ACNGT	1 cut(s)	177
TaiI	ACGT	2 cut(s)	88, 499
TaqI	TCGA	2 cut(s)	422, 592
TaqII	GACCGA	1 cut(s)	489
TasI	AATT	2 cut(s)	56, 248
TfiI	GAWTC	1 cut(s)	594
Tru1I	TTAA	4 cut(s)	51, 285, 482, 552
Tru9I	TTAA	4 cut(s)	51, 285, 482, 552
TscAI	CASTG	1 cut(s)	372
TseFI	GTSAC	2 cut(s)	86, 363
TseI	GCWGC	1 cut(s)	560
Tsp45I	GTSAC	2 cut(s)	86, 363
TspDTI	ATGAA	3 cut(s)	174, 231, 243
TspRI	CASTG	1 cut(s)	372
VpaK11BI	GGWCC	1 cut(s)	472
XceI	RCATGY	4 cut(s)	140, 212, 409, 418
XmiI	GTMKAC	1 cut(s)	579
XmnI	GAANNNNTTC	1 cut(s)	391
XspI	CTAG	3 cut(s)	147, 263, 587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.