Rmu_ssc0000381.1_g000014

F-box protein SKIP14-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000381.1
Physical Location & Seq
Forward (+)
85827 .. 86150
324 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 324 bp
atgagggatcaatgtaaagagaagagttcggatggtgaagcatcgagttcgaattcgaatttgaagaagagtatccattacaagggtgaattgggtggctattatgagccttctactgatgatattcttgataggttgcctgttaatccttttggaatggatatgaggtctacttttacggccatttgtgcttggctagaggattttgagaagaggtgtgagtcttatgggtttggggaagatgaaagagaatccaaattggggacaaagctctgtacatcgatcatgtttaaccttccaattcccaactcttcgatttcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

107

Amino Acids

12.03

Weight (kDa)

4.84

Isoelectric Point (pI)

44.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0025368)

Species Orthologous Gene IDs
rosa_laevigata RLG00000024610
rosa_multiflora Rmu_sc0004088.1_g000002 Rmu_ssc0000381.1_g000014

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 170
AclWI GGATC 1 cut(s) 15
AcoI YGGCCR 1 cut(s) 180
AcsI RAATTY 2 cut(s) 52, 58
AfaI GTAC 1 cut(s) 277
AfiI CCNNNNNNNGG 2 cut(s) 82, 261
AgsI TTSAA 1 cut(s) 64
AluBI AGCT 1 cut(s) 271
AluI AGCT 1 cut(s) 271
AlwI GGATC 1 cut(s) 15
AoxI GGCC 1 cut(s) 180
ApoI RAATTY 2 cut(s) 52, 58
AsuHPI GGTGA 2 cut(s) 47, 98
AsuII TTCGAA 2 cut(s) 50, 56
BccI CCATC 1 cut(s) 26
BceAI ACGGC 1 cut(s) 195
BcgI CGANNNNNNTGC 2 cut(s) 30, 64
BciVI GTATCC 1 cut(s) 83
BfaI CTAG 1 cut(s) 197
BfuI GTATCC 1 cut(s) 83
BmsI GCATC 1 cut(s) 50
Bpu14I TTCGAA 2 cut(s) 50, 56
Bsa29I ATCGAT 1 cut(s) 281
Bsc4I CCNNNNNNNGG 2 cut(s) 82, 261
BseCI ATCGAT 1 cut(s) 281
BseGI GGATG 1 cut(s) 37
BseLI CCNNNNNNNGG 2 cut(s) 82, 261
BshFI GGCC 1 cut(s) 182
BshVI ATCGAT 1 cut(s) 281
BslFI GGGAC 1 cut(s) 277
BslI CCNNNNNNNGG 2 cut(s) 82, 261
BsmFI GGGAC 1 cut(s) 277
BsnI GGCC 1 cut(s) 182
Bsp119I TTCGAA 2 cut(s) 50, 56
Bsp1407I TGTACA 1 cut(s) 275
Bsp143I GATC 2 cut(s) 7, 282
BspANI GGCC 1 cut(s) 182
BspDI ATCGAT 1 cut(s) 281
BspPI GGATC 1 cut(s) 15
BspT104I TTCGAA 2 cut(s) 50, 56
BsrGI TGTACA 1 cut(s) 275
BssMI GATC 2 cut(s) 7, 282
Bst6I CTCTTC 4 cut(s) 17, 62, 206, 316
BstAUI TGTACA 1 cut(s) 275
BstBI TTCGAA 2 cut(s) 50, 56
BstF5I GGATG 1 cut(s) 37
BstKTI GATC 2 cut(s) 10, 285
BstMBI GATC 2 cut(s) 7, 282
BstMWI GCNNNNNNNGC 1 cut(s) 188
Bsu15I ATCGAT 1 cut(s) 281
BsuI GTATCC 1 cut(s) 83
BsuRI GGCC 1 cut(s) 182
BsuTUI ATCGAT 1 cut(s) 281
BtsCI GGATG 1 cut(s) 37
ClaI ATCGAT 1 cut(s) 281
Csp6I GTAC 1 cut(s) 276
CviAII CATG 1 cut(s) 286
CviJI RGCY 5 cut(s) 99, 109, 182, 196, 271
CviKI_1 RGCY 5 cut(s) 99, 109, 182, 196, 271
CviQI GTAC 1 cut(s) 276
DpnI GATC 2 cut(s) 9, 284
DpnII GATC 2 cut(s) 7, 282
EaeI YGGCCR 1 cut(s) 180
Eam1104I CTCTTC 4 cut(s) 17, 62, 206, 316
EarI CTCTTC 4 cut(s) 17, 62, 206, 316
EcoRI GAATTC 1 cut(s) 52
FaeI CATG 1 cut(s) 289
FaiI YATR 4 cut(s) 105, 164, 228, 287
FaqI GGGAC 1 cut(s) 277
FatI CATG 1 cut(s) 285
FblI GTMKAC 1 cut(s) 170
FokI GGATG 1 cut(s) 44
FspBI CTAG 1 cut(s) 197
HaeIII GGCC 1 cut(s) 182
Hin1II CATG 1 cut(s) 289
HinfI GANTC 2 cut(s) 221, 251
HphI GGTGA 2 cut(s) 47, 98
Hpy166II GTNNAC 1 cut(s) 171
Hpy188I TCNGA 1 cut(s) 31
Hpy188III TCNNGA 2 cut(s) 128, 321
Hpy8I GTNNAC 1 cut(s) 171
HpyAV CCTTC 2 cut(s) 120, 305
HpyF10VI GCNNNNNNNGC 1 cut(s) 188
Hsp92II CATG 1 cut(s) 289
Kzo9I GATC 2 cut(s) 7, 282
LpnPI CCDG 1 cut(s) 153
LweI GCATC 1 cut(s) 50
MaeI CTAG 1 cut(s) 197
MalI GATC 2 cut(s) 9, 284
MboI GATC 2 cut(s) 7, 282
MboII GAAGA 6 cut(s) 34, 76, 79, 223, 251, 303
MluCI AATT 5 cut(s) 52, 58, 89, 257, 300
MlyI GAGTC 1 cut(s) 230
MnlI CCTC 3 cut(s) 159, 193, 207
MseI TTAA 2 cut(s) 144, 291
MwoI GCNNNNNNNGC 1 cut(s) 188
NdeII GATC 2 cut(s) 7, 282
NlaIII CATG 1 cut(s) 289
NspV TTCGAA 2 cut(s) 50, 56
PfeI GAWTC 1 cut(s) 251
PleI GAGTC 1 cut(s) 229
PpsI GAGTC 1 cut(s) 229
RsaI GTAC 1 cut(s) 277
RsaNI GTAC 1 cut(s) 276
SaqAI TTAA 2 cut(s) 144, 291
Sau3AI GATC 2 cut(s) 7, 282
SchI GAGTC 1 cut(s) 230
SetI ASST 5 cut(s) 137, 170, 218, 273, 297
SfaNI GCATC 1 cut(s) 50
SfuI TTCGAA 2 cut(s) 50, 56
SgeI CNNG 7 cut(s) 57, 94, 140, 152, 204, 209, 298
Sse9I AATT 5 cut(s) 52, 58, 89, 257, 300
SspMI CTAG 1 cut(s) 197
TaqI TCGA 5 cut(s) 44, 50, 56, 281, 314
TasI AATT 5 cut(s) 52, 58, 89, 257, 300
TatI WGTACW 1 cut(s) 275
TfiI GAWTC 1 cut(s) 251
Tru1I TTAA 2 cut(s) 144, 291
Tru9I TTAA 2 cut(s) 144, 291
TspDTI ATGAA 1 cut(s) 258
XapI RAATTY 2 cut(s) 52, 58
XmiI GTMKAC 1 cut(s) 170
XspI CTAG 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.