Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000400.1

Orthogroup ID

OG0025389

Physical Location & Seq

Genomic Coordinates Forward (+)

171034 .. 172092

Gene Structure 1059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

atgtcttctatttggaagctgcatggtgatatactggactttccaacaaattcatcggttgaggatgatgcaagaagtgaagcatcagttgttgctaacttctcccggttcattcctagaatcccttcaacctcttctgtttcccatgttatcagtgttggacagcttctagaatcggcacttgaggttgctggtcacgtagcaggaacatctgtatctacatcacacctcccatgcaacaccatggcaagacagtgtgaatcccttggcacaggcacaaggaagaagctttctaattggttggcccatgaacaacatcaaagcaacactgtcccaccatttcttgcaggtggatgcacagcacttcagaagggagctgcatcggcacaggactcgtggttagctgctatcagtttgcctcctgctagtccgtttgacaacatcctcaaaggcagctggccggttgttagtagaagatctagtattaagcatgatgaaatctgcatctttttatctctcctctcttacctttcacccgccttccctctccctgccaactctaaaaaggttgtgcctcctttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

194

Amino Acids

20.72

Weight (kDa)

7.76

Isoelectric Point (pI)

58.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025389)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000030405
rosa_multiflora	Rmu_ssc0000400.1_g000037
rosa_wichuraiana	Rw0G005690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	338
Acc36I	ACCTGC	1 cut(s)	338
AciI	CCGC	1 cut(s)	537
AcoI	YGGCCR	1 cut(s)	458
AcsI	RAATTY	1 cut(s)	49
AcuI	CTGAAG	1 cut(s)	350
AgsI	TTSAA	1 cut(s)	129
AluBI	AGCT	6 cut(s)	19, 166, 289, 377, 404, 456
AluI	AGCT	6 cut(s)	19, 166, 289, 377, 404, 456
AoxI	GGCC	2 cut(s)	303, 458
ApeKI	GCWGC	4 cut(s)	19, 377, 404, 453
ApoI	RAATTY	1 cut(s)	49
Asp700I	GAANNNNTTC	1 cut(s)	124
AspS9I	GGNCC	1 cut(s)	304
AsuC2I	CCSGG	1 cut(s)	106
AsuHPI	GGTGA	2 cut(s)	38, 525
BaeI	ACNNNNGTAYC	2 cut(s)	198, 231
BauI	CACGAG	1 cut(s)	394
BbvI	GCAGC	4 cut(s)	6, 364, 391, 465
BcgI	CGANNNNNNTGC	2 cut(s)	375, 409
BcnI	CCSGG	1 cut(s)	106
BfaI	CTAG	4 cut(s)	117, 170, 426, 480
BfuAI	ACCTGC	1 cut(s)	338
BglII	AGATCT	1 cut(s)	476
BisI	GCNGC	4 cut(s)	20, 378, 405, 454
BlsI	GCNGC	4 cut(s)	21, 379, 406, 455
Bme1390I	CCNGG	1 cut(s)	106
BmgT120I	GGNCC	1 cut(s)	304
BmrFI	CCNGG	1 cut(s)	106
BmsI	GCATC	5 cut(s)	58, 92, 344, 389, 513
BpuEI	CTTGAG	1 cut(s)	203
BpuMI	CCSGG	1 cut(s)	106
BsaAI	YACGTR	1 cut(s)	199
BsaJI	CCNNGG	2 cut(s)	243, 265
Bse118I	RCCGGY	1 cut(s)	460
Bse1I	ACTGG	1 cut(s)	39
BseDI	CCNNGG	2 cut(s)	243, 265
BseGI	GGATG	3 cut(s)	70, 359, 441
BseNI	ACTGG	1 cut(s)	39
BseRI	GAGGAG	1 cut(s)	509
BseXI	GCAGC	4 cut(s)	6, 364, 391, 465
BshFI	GGCC	2 cut(s)	305, 460
BsiSI	CCGG	2 cut(s)	106, 461
BslFI	GGGAC	1 cut(s)	317
BsmFI	GGGAC	1 cut(s)	317
BsnI	GGCC	2 cut(s)	305, 460
Bsp143I	GATC	1 cut(s)	476
Bsp19I	CCATGG	1 cut(s)	243
BspACI	CCGC	1 cut(s)	537
BspANI	GGCC	2 cut(s)	305, 460
BspMI	ACCTGC	1 cut(s)	338
BsrFI	RCCGGY	1 cut(s)	460
BsrI	ACTGG	1 cut(s)	39
BssAI	RCCGGY	1 cut(s)	460
BssECI	CCNNGG	2 cut(s)	243, 265
BssMI	GATC	1 cut(s)	476
BssSI	CACGAG	1 cut(s)	394
BssT1I	CCWWGG	2 cut(s)	243, 265
Bst2BI	CACGAG	1 cut(s)	394
Bst4CI	ACNGT	2 cut(s)	255, 331
Bst6I	CTCTTC	1 cut(s)	139
BstBAI	YACGTR	1 cut(s)	199
BstC8I	GCNNGC	1 cut(s)	458
BstDSI	CCRYGG	1 cut(s)	243
BstF5I	GGATG	3 cut(s)	70, 359, 441
BstKTI	GATC	1 cut(s)	479
BstMBI	GATC	1 cut(s)	476
BstMWI	GCNNNNNNNGC	1 cut(s)	383
BstSCI	CCNGG	1 cut(s)	104
BstV1I	GCAGC	4 cut(s)	6, 364, 391, 465
BstX2I	RGATCY	1 cut(s)	476
BstYI	RGATCY	1 cut(s)	476
BsuRI	GGCC	2 cut(s)	305, 460
BtgI	CCRYGG	1 cut(s)	243
BtsCI	GGATG	3 cut(s)	70, 359, 441
BtsIMutI	CAGTG	3 cut(s)	160, 260, 327
BveI	ACCTGC	1 cut(s)	338
Cac8I	GCNNGC	1 cut(s)	458
Cfr10I	RCCGGY	1 cut(s)	460
Cfr13I	GGNCC	1 cut(s)	304
CviAII	CATG	6 cut(s)	23, 146, 234, 244, 308, 491
CviJI	RGCY	8 cut(s)	19, 166, 289, 305, 377, 404, 456, 460
CviKI_1	RGCY	8 cut(s)	19, 166, 289, 305, 377, 404, 456, 460
DpnI	GATC	1 cut(s)	478
DpnII	GATC	1 cut(s)	476
EaeI	YGGCCR	1 cut(s)	458
Eam1104I	CTCTTC	1 cut(s)	139
EarI	CTCTTC	1 cut(s)	139
Eco130I	CCWWGG	2 cut(s)	243, 265
Eco57I	CTGAAG	1 cut(s)	350
EcoT14I	CCWWGG	2 cut(s)	243, 265
ErhI	CCWWGG	2 cut(s)	243, 265
FaeI	CATG	6 cut(s)	26, 149, 237, 247, 311, 494
FaiI	YATR	7 cut(s)	24, 32, 147, 235, 245, 309, 492
FaqI	GGGAC	1 cut(s)	317
FatI	CATG	6 cut(s)	22, 145, 233, 243, 307, 490
FauI	CCCGC	1 cut(s)	544
Fnu4HI	GCNGC	4 cut(s)	20, 378, 405, 454
FokI	GGATG	3 cut(s)	77, 366, 428
Fsp4HI	GCNGC	4 cut(s)	20, 378, 405, 454
FspBI	CTAG	4 cut(s)	117, 170, 426, 480
GluI	GCNGC	4 cut(s)	20, 378, 405, 454
HaeIII	GGCC	2 cut(s)	305, 460
HapII	CCGG	2 cut(s)	106, 461
Hin1II	CATG	6 cut(s)	26, 149, 237, 247, 311, 494
HindIII	AAGCTT	1 cut(s)	287
HinfI	GANTC	4 cut(s)	120, 173, 260, 392
HpaII	CCGG	2 cut(s)	106, 461
HphI	GGTGA	2 cut(s)	38, 525
Hpy188I	TCNGA	1 cut(s)	369
Hpy188III	TCNNGA	1 cut(s)	170
HpyAV	CCTTC	3 cut(s)	135, 364, 550
HpyCH4III	ACNGT	2 cut(s)	255, 331
HpyCH4IV	ACGT	1 cut(s)	198
HpyCH4V	TGCA	7 cut(s)	22, 71, 237, 347, 357, 380, 504
HpyF10VI	GCNNNNNNNGC	1 cut(s)	383
HpySE526I	ACGT	1 cut(s)	198
Hsp92II	CATG	6 cut(s)	26, 149, 237, 247, 311, 494
Kzo9I	GATC	1 cut(s)	476
LmnI	GCTCC	1 cut(s)	374
Lsp1109I	GCAGC	4 cut(s)	6, 364, 391, 465
LweI	GCATC	5 cut(s)	58, 92, 344, 389, 513
MaeI	CTAG	4 cut(s)	117, 170, 426, 480
MaeII	ACGT	1 cut(s)	198
MaeIII	GTNAC	1 cut(s)	194
MalI	GATC	1 cut(s)	478
MboI	GATC	1 cut(s)	476
MboII	GAAGA	3 cut(s)	126, 295, 486
MflI	RGATCY	1 cut(s)	476
MluCI	AATT	2 cut(s)	49, 295
MlyI	GAGTC	1 cut(s)	386
MmeI	TCCRAC	2 cut(s)	68, 139
MnlI	CCTC	9 cut(s)	55, 142, 178, 239, 429, 455, 530, 555, 585
MroXI	GAANNNNTTC	1 cut(s)	124
MseI	TTAA	2 cut(s)	486, 583
MspA1I	CMGCKG	1 cut(s)	456
MspI	CCGG	2 cut(s)	106, 461
MspR9I	CCNGG	1 cut(s)	106
MwoI	GCNNNNNNNGC	1 cut(s)	383
NciI	CCSGG	1 cut(s)	106
NcoI	CCATGG	1 cut(s)	243
NdeII	GATC	1 cut(s)	476
NlaIII	CATG	6 cut(s)	26, 149, 237, 247, 311, 494
NmuCI	GTSAC	1 cut(s)	194
PaqCI	CACCTGC	1 cut(s)	338
PdmI	GAANNNNTTC	1 cut(s)	124
PfeI	GAWTC	3 cut(s)	120, 173, 260
PkrI	GCNGC	4 cut(s)	21, 379, 406, 455
PleI	GAGTC	1 cut(s)	386
PpsI	GAGTC	1 cut(s)	386
Ppu21I	YACGTR	1 cut(s)	199
PspPI	GGNCC	1 cut(s)	304
PsuI	RGATCY	1 cut(s)	476
PvuII	CAGCTG	1 cut(s)	456
SaqAI	TTAA	2 cut(s)	486, 583
SatI	GCNGC	4 cut(s)	20, 378, 405, 454
Sau3AI	GATC	1 cut(s)	476
Sau96I	GGNCC	1 cut(s)	304
SchI	GAGTC	1 cut(s)	386
ScrFI	CCNGG	1 cut(s)	106
SfaNI	GCATC	5 cut(s)	58, 92, 344, 389, 513
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
Sse9I	AATT	2 cut(s)	49, 295
SsiI	CCGC	1 cut(s)	537
SspMI	CTAG	4 cut(s)	117, 170, 426, 480
StyD4I	CCNGG	1 cut(s)	104
StyI	CCWWGG	2 cut(s)	243, 265
TaaI	ACNGT	2 cut(s)	255, 331
TaiI	ACGT	1 cut(s)	201
TasI	AATT	2 cut(s)	49, 295
TfiI	GAWTC	3 cut(s)	120, 173, 260
Tru1I	TTAA	2 cut(s)	486, 583
Tru9I	TTAA	2 cut(s)	486, 583
TscAI	CASTG	3 cut(s)	160, 260, 334
TseFI	GTSAC	1 cut(s)	194
TseI	GCWGC	4 cut(s)	19, 377, 404, 453
Tsp45I	GTSAC	1 cut(s)	194
TspDTI	ATGAA	4 cut(s)	42, 100, 324, 510
TspGWI	ACGGA	1 cut(s)	420
TspRI	CASTG	3 cut(s)	160, 260, 334
XapI	RAATTY	1 cut(s)	49
XbaI	TCTAGA	1 cut(s)	169
XmnI	GAANNNNTTC	1 cut(s)	124
XspI	CTAG	4 cut(s)	117, 170, 426, 480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.