Rmu_ssc0000437.1_g000001

DUF21 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000437.1
OG0024192
Physical Location & Seq
Forward (+)
1 .. 1666
1666 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 813 bp
ggccatggacatgtagctctgtttcgcagagcggagttgaaaacgcttgtagatatgcatggcaatgaggccggaaaaggtggagaattgacacatgatgagacaacaattattgctggagcacttgaactcagtgagaaaactgcccgtgacgccatgactcctatagctgaaacttttgcaattgatatcaatgccaagcttgacaggaatttgatgaatctgataatggagaaagggcatagtagagtgccagtttactatgaagagcctacaaacataattggacttgtcctggtcaaaaacttgttgacagttcatccagaagaggaaacacctgtaaagaatgtcactatacgcaagatcccaagggttcgagaaacattgccgttgtatgacattctgaatgaatttcagaaaggtcacagtcacatggctattgttataagacggtgcaatactgaggagcagcccaatggcaatacagctgacagtccagtgaaagaagtgaaagtggacattgatggtgaaaagcctcctcaggagaagattttgaagagcaaaagatcactgaacaaatggaagagctttccgaacagtgggaatatttcacagaggagtgggtccagaagcaagaaatggtccaaggacatgtattcagacatccttgagatagatagtgaagcactcccaaagctcccagaagaggaagtggctgttggcattataacaatggaagacgttatcgaagagcttttacaggaggagatatttgatgaaactgatcatcagtatgaggactcatactcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF21

Protein Analysis

270

Amino Acids

30.51

Weight (kDa)

5.17

Isoelectric Point (pI)

55.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024192)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g45201
rosa_multiflora Rmu_sc0012516.1_g000001 Rmu_ssc0000437.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 446, 728
AccBSI CCGCTC 1 cut(s) 32
AciI CCGC 1 cut(s) 32
AclWI GGATC 1 cut(s) 358
AcsI RAATTY 2 cut(s) 211, 410
AcyI GRCGYC 1 cut(s) 153
AfiI CCNNNNNNNGG 2 cut(s) 599, 706
AflIII ACRYGT 2 cut(s) 10, 651
AgsI TTSAA 3 cut(s) 40, 128, 556
AjnI CCWGG 1 cut(s) 294
AjuI GAANNNNNNNTTGG 2 cut(s) 702, 734
AluBI AGCT 7 cut(s) 17, 170, 202, 488, 588, 697, 754
AluI AGCT 7 cut(s) 17, 170, 202, 488, 588, 697, 754
Alw21I GWGCWC 1 cut(s) 124
Alw26I GTCTC 1 cut(s) 95
AlwI GGATC 1 cut(s) 358
AoxI GGCC 1 cut(s) 69
ApeKI GCWGC 1 cut(s) 469
ApoI RAATTY 2 cut(s) 211, 410
AspS9I GGNCC 2 cut(s) 624, 642
AsuHPI GGTGA 1 cut(s) 539
AvaII GGWCC 2 cut(s) 624, 642
AxyI CCTNAGG 1 cut(s) 540
BarI GAAGNNNNNNTAC 2 cut(s) 741, 773
BbsI GAAGAC 1 cut(s) 744
Bbv12I GWGCWC 1 cut(s) 124
BbvI GCAGC 1 cut(s) 481
BccI CCATC 1 cut(s) 518
BceAI ACGGC 1 cut(s) 373
BciT130I CCWGG 1 cut(s) 296
BclI TGATCA 1 cut(s) 784
BcoDI GTCTC 1 cut(s) 95
BfmI CTRYAG 1 cut(s) 165
BisI GCNGC 1 cut(s) 470
BlsI GCNGC 1 cut(s) 471
Bme1390I CCNGG 1 cut(s) 296
Bme18I GGWCC 2 cut(s) 624, 642
BmgT120I GGNCC 2 cut(s) 624, 642
BmiI GGNNCC 1 cut(s) 625
BmrFI CCNGG 1 cut(s) 296
BpiI GAAGAC 1 cut(s) 744
BpmI CTGGAG 1 cut(s) 138
BpuEI CTTGAG 1 cut(s) 689
BsaHI GRCGYC 1 cut(s) 153
BsaJI CCNNGG 3 cut(s) 4, 368, 645
Bsc4I CCNNNNNNNGG 2 cut(s) 599, 706
Bse1I ACTGG 2 cut(s) 254, 497
Bse21I CCTNAGG 1 cut(s) 540
Bse3DI GCAATG 2 cut(s) 70, 383
BseBI CCWGG 1 cut(s) 296
BseDI CCNNGG 3 cut(s) 4, 368, 645
BseGI GGATG 2 cut(s) 319, 663
BseLI CCNNNNNNNGG 2 cut(s) 599, 706
BseMI GCAATG 2 cut(s) 70, 383
BseMII CTCAG 3 cut(s) 145, 453, 554
BseNI ACTGG 2 cut(s) 254, 497
BseRI GAGGAG 4 cut(s) 479, 528, 631, 779
BseXI GCAGC 1 cut(s) 481
BshFI GGCC 2 cut(s) 3, 71
BsiHKAI GWGCWC 1 cut(s) 124
BsiSI CCGG 1 cut(s) 72
BslI CCNNNNNNNGG 2 cut(s) 599, 706
BsmAI GTCTC 1 cut(s) 95
BsnI GGCC 2 cut(s) 3, 71
Bsp1286I GDGCHC 1 cut(s) 124
Bsp143I GATC 3 cut(s) 363, 566, 784
Bsp19I CCATGG 1 cut(s) 4
BspACI CCGC 1 cut(s) 32
BspANI GGCC 2 cut(s) 3, 71
BspCNI CTCAG 3 cut(s) 144, 454, 553
BspLI GGNNCC 1 cut(s) 625
BspPI GGATC 1 cut(s) 358
BspQI GCTCTTC 4 cut(s) 261, 551, 578, 744
BsrBI CCGCTC 1 cut(s) 32
BsrDI GCAATG 2 cut(s) 70, 383
BsrI ACTGG 2 cut(s) 254, 497
BssECI CCNNGG 3 cut(s) 4, 368, 645
BssMI GATC 3 cut(s) 363, 566, 784
BssNI GRCGYC 1 cut(s) 153
BssT1I CCWWGG 3 cut(s) 4, 368, 645
Bst2UI CCWGG 1 cut(s) 296
Bst4CI ACNGT 5 cut(s) 316, 428, 453, 494, 599
Bst6I CTCTTC 6 cut(s) 261, 321, 551, 578, 699, 744
BstACI GRCGYC 1 cut(s) 153
BstDEI CTNAG 3 cut(s) 131, 462, 540
BstDSI CCRYGG 1 cut(s) 4
BstF5I GGATG 2 cut(s) 319, 663
BstKTI GATC 3 cut(s) 366, 569, 787
BstMAI GTCTC 1 cut(s) 95
BstMBI GATC 3 cut(s) 363, 566, 784
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstNI CCWGG 1 cut(s) 296
BstNSI RCATGY 2 cut(s) 14, 655
BstSCI CCNGG 1 cut(s) 294
BstSFI CTRYAG 1 cut(s) 165
BstV1I GCAGC 1 cut(s) 481
BstV2I GAAGAC 1 cut(s) 744
BstX2I RGATCY 1 cut(s) 363
BstYI RGATCY 1 cut(s) 363
Bsu36I CCTNAGG 1 cut(s) 540
BsuRI GGCC 2 cut(s) 3, 71
BtgI CCRYGG 1 cut(s) 4
BtsCI GGATG 2 cut(s) 319, 663
BtsIMutI CAGTG 4 cut(s) 139, 504, 569, 604
Cfr13I GGNCC 2 cut(s) 624, 642
CseI GACGC 1 cut(s) 161
CviAII CATG 7 cut(s) 5, 11, 59, 95, 157, 433, 652
DdeI CTNAG 3 cut(s) 131, 462, 540
DpnI GATC 3 cut(s) 365, 568, 786
DpnII GATC 3 cut(s) 363, 566, 784
Eam1104I CTCTTC 6 cut(s) 261, 321, 551, 578, 699, 744
EarI CTCTTC 6 cut(s) 261, 321, 551, 578, 699, 744
Eco130I CCWWGG 3 cut(s) 4, 368, 645
Eco32I GATATC 1 cut(s) 190
Eco47I GGWCC 2 cut(s) 624, 642
Eco81I CCTNAGG 1 cut(s) 540
EcoRII CCWGG 1 cut(s) 294
EcoRV GATATC 1 cut(s) 190
EcoT14I CCWWGG 3 cut(s) 4, 368, 645
EcoT22I ATGCAT 1 cut(s) 60
ErhI CCWWGG 3 cut(s) 4, 368, 645
FaeI CATG 7 cut(s) 8, 14, 62, 98, 160, 436, 655
FatI CATG 7 cut(s) 4, 10, 58, 94, 156, 432, 651
FbaI TGATCA 1 cut(s) 784
Fnu4HI GCNGC 1 cut(s) 470
FokI GGATG 2 cut(s) 306, 650
Fsp4HI GCNGC 1 cut(s) 470
GluI GCNGC 1 cut(s) 470
GsuI CTGGAG 1 cut(s) 138
HaeIII GGCC 2 cut(s) 3, 71
HapII CCGG 1 cut(s) 72
HgaI GACGC 1 cut(s) 161
Hin1I GRCGYC 1 cut(s) 153
Hin1II CATG 7 cut(s) 8, 14, 62, 98, 160, 436, 655
HincII GTYRAC 1 cut(s) 312
HindII GTYRAC 1 cut(s) 312
HindIII AAGCTT 1 cut(s) 200
HinfI GANTC 3 cut(s) 160, 220, 800
HpaII CCGG 1 cut(s) 72
HphI GGTGA 1 cut(s) 539
Hpy166II GTNNAC 3 cut(s) 259, 312, 517
Hpy188I TCNGA 5 cut(s) 225, 405, 417, 594, 661
Hpy188III TCNNGA 4 cut(s) 323, 377, 542, 627
Hpy8I GTNNAC 3 cut(s) 259, 312, 517
HpyCH4III ACNGT 5 cut(s) 316, 428, 453, 494, 599
HpyCH4IV ACGT 1 cut(s) 741
HpyCH4V TGCA 3 cut(s) 58, 182, 456
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
HpyF3I CTNAG 3 cut(s) 131, 462, 540
HpySE526I ACGT 1 cut(s) 741
Hsp92I GRCGYC 1 cut(s) 153
Hsp92II CATG 7 cut(s) 8, 14, 62, 98, 160, 436, 655
Ksp22I TGATCA 1 cut(s) 784
Kzo9I GATC 3 cut(s) 363, 566, 784
LguI GCTCTTC 4 cut(s) 261, 551, 578, 744
LmnI GCTCC 3 cut(s) 119, 466, 702
Lsp1109I GCAGC 1 cut(s) 481
MaeII ACGT 1 cut(s) 741
MaeIII GTNAC 4 cut(s) 149, 349, 422, 428
MalI GATC 3 cut(s) 365, 568, 786
MbiI CCGCTC 1 cut(s) 32
MboI GATC 3 cut(s) 363, 566, 784
MboII GAAGA 8 cut(s) 278, 338, 559, 568, 595, 716, 749, 761
MfeI CAATTG 1 cut(s) 183
MflI RGATCY 1 cut(s) 363
MhlI GDGCHC 1 cut(s) 124
MluCI AATT 6 cut(s) 86, 108, 183, 211, 282, 410
MlyI GAGTC 2 cut(s) 154, 794
MnlI CCTC 9 cut(s) 61, 322, 457, 546, 549, 609, 700, 757, 790
Mph1103I ATGCAT 1 cut(s) 60
MslI CAYNNNNRTG 3 cut(s) 9, 63, 792
MspA1I CMGCKG 1 cut(s) 488
MspI CCGG 1 cut(s) 72
MspR9I CCNGG 1 cut(s) 296
MunI CAATTG 1 cut(s) 183
MvaI CCWGG 1 cut(s) 296
MwoI GCNNNNNNNGC 1 cut(s) 152
NcoI CCATGG 1 cut(s) 4
NdeII GATC 3 cut(s) 363, 566, 784
NlaIII CATG 7 cut(s) 8, 14, 62, 98, 160, 436, 655
NlaIV GGNNCC 1 cut(s) 625
NmuCI GTSAC 4 cut(s) 149, 349, 422, 428
NsiI ATGCAT 1 cut(s) 60
NspI RCATGY 2 cut(s) 14, 655
PciI ACATGT 2 cut(s) 10, 651
PciSI GCTCTTC 4 cut(s) 261, 551, 578, 744
PfeI GAWTC 1 cut(s) 220
PkrI GCNGC 1 cut(s) 471
PleI GAGTC 2 cut(s) 154, 794
PpsI GAGTC 2 cut(s) 154, 794
PscI ACATGT 2 cut(s) 10, 651
PsiI TTATAA 2 cut(s) 446, 728
Psp6I CCWGG 1 cut(s) 294
PspGI CCWGG 1 cut(s) 294
PspN4I GGNNCC 1 cut(s) 625
PspPI GGNCC 2 cut(s) 624, 642
PsuI RGATCY 1 cut(s) 363
PvuII CAGCTG 1 cut(s) 488
RseI CAYNNNNRTG 3 cut(s) 9, 63, 792
SapI GCTCTTC 4 cut(s) 261, 551, 578, 744
SatI GCNGC 1 cut(s) 470
Sau3AI GATC 3 cut(s) 363, 566, 784
Sau96I GGNCC 2 cut(s) 624, 642
SchI GAGTC 2 cut(s) 154, 794
ScrFI CCNGG 1 cut(s) 296
SduI GDGCHC 1 cut(s) 124
SfcI CTRYAG 1 cut(s) 165
SinI GGWCC 2 cut(s) 624, 642
SmiMI CAYNNNNRTG 3 cut(s) 9, 63, 792
SmlI CTYRAG 1 cut(s) 668
SmoI CTYRAG 1 cut(s) 668
Sse9I AATT 6 cut(s) 86, 108, 183, 211, 282, 410
SsiI CCGC 1 cut(s) 32
SspI AATATT 1 cut(s) 607
StyD4I CCNGG 1 cut(s) 294
StyI CCWWGG 3 cut(s) 4, 368, 645
TaaI ACNGT 5 cut(s) 316, 428, 453, 494, 599
TaiI ACGT 1 cut(s) 744
TaqI TCGA 2 cut(s) 376, 747
TasI AATT 6 cut(s) 86, 108, 183, 211, 282, 410
TfiI GAWTC 1 cut(s) 220
TscAI CASTG 4 cut(s) 139, 504, 576, 604
TseFI GTSAC 4 cut(s) 149, 349, 422, 428
TseI GCWGC 1 cut(s) 469
Tsp45I GTSAC 4 cut(s) 149, 349, 422, 428
TspDTI ATGAA 5 cut(s) 233, 279, 308, 423, 792
TspRI CASTG 4 cut(s) 139, 504, 576, 604
VpaK11BI GGWCC 2 cut(s) 624, 642
XapI RAATTY 2 cut(s) 211, 410
XceI RCATGY 2 cut(s) 14, 655
Zsp2I ATGCAT 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.