Rmu_ssc0000444.1_g000001

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000444.1
OG0028728
Physical Location & Seq
Forward (+)
1 .. 1625
1625 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000444.1_g000001.1.cds

Sequence Viewer

Length: 1041 bp
ttttcacaccaccatggagaacacccttctccttctctctctcctcctcctcctcctcctagttccttcctctgctcaaatgccagggtttgttagtttggattgtggaggtgaagagttttttactgatgatcttggtctgaattggagtcctgatgaacttcgttacggcgaaacgagttttatagaggttttgaatgagaccaggaagcaatacacttcgctgaggcactttcctgctgattccagaaaatactgttacacgatgaatgtcacaagtaggactaggtacctgttgagagcgacgttcttgtatggtaactttgacagcaacaatgtttatcctaagtttgatatttctgttggggcaactcattggtctacgattgtgatttcggatgcgaatactatagagatgatagagctgatatttctggctactagtcctactgtcagtgtgtgcttgtccaatgctacaactgggcagccttttatatcgaccttggagcttcgacagttcaatggttcggtttactatactgattatgaacaacagttttacctcagtgtctccgctaggattaattttggtgcagatagtgaagatccagttaggtaccctgatgacccttttgatagaatttggttatcagactccatcaagaaagcaaattaccttgttgacattgctgctggaaccaagaaagtcgcaaccaaattgccaattgatgttaatagggatgacctgccgcctcagaaagttatgcagacggctgtagttggtacaaatggatcattgacttaccggctgaacctggatggttttcctggtactggctgggcagtcacctactttgcagaaattgaagatttggctccagatgagtccagaaagtttaggctagtacttccaggaaatcctgaactcagcaaagctattgttaatattgaggaaaacgcccaaggaaaatatcgtctctatgaaccaggatttacaaacttatcgcttccatttgtattatcttttagatttgggaaaac
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_4 LRR_8 Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

347

Amino Acids

39.12

Weight (kDa)

4.87

Isoelectric Point (pI)

34.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028728)

Species Orthologous Gene IDs
malus_domestica MD12G1125000.v1.1
rosa_multiflora Rmu_ssc0000444.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 754
Acc65I GGTACC 2 cut(s) 289, 616
AccB1I GGYRCC 2 cut(s) 289, 616
AccI GTMKAC 1 cut(s) 381
AciI CCGC 2 cut(s) 574, 750
AclWI GGATC 2 cut(s) 600, 800
AcsI RAATTY 1 cut(s) 640
AfaI GTAC 5 cut(s) 291, 618, 785, 833, 907
AfiI CCNNNNNNNGG 1 cut(s) 834
AgsI TTSAA 3 cut(s) 197, 521, 867
AhlI ACTAGT 1 cut(s) 441
AjnI CCWGG 6 cut(s) 83, 204, 814, 827, 911, 986
AluBI AGCT 3 cut(s) 425, 509, 936
AluI AGCT 3 cut(s) 425, 509, 936
Alw26I GTCTC 3 cut(s) 195, 575, 981
AlwI GGATC 2 cut(s) 600, 800
ApeKI GCWGC 2 cut(s) 485, 690
ApoI RAATTY 1 cut(s) 640
AseI ATTAAT 1 cut(s) 583
Asp718I GGTACC 2 cut(s) 289, 616
AsuHPI GGTGA 2 cut(s) 123, 839
BanI GGYRCC 2 cut(s) 289, 616
BbvCI CCTCAGC 1 cut(s) 225
BbvI GCAGC 2 cut(s) 497, 677
BccI CCATC 2 cut(s) 666, 813
BceAI ACGGC 2 cut(s) 185, 787
BciT130I CCWGG 6 cut(s) 85, 206, 816, 829, 913, 988
BcoDI GTCTC 3 cut(s) 195, 575, 981
BcuI ACTAGT 1 cut(s) 441
BfaI CTAG 5 cut(s) 60, 286, 442, 577, 903
BfmI CTRYAG 2 cut(s) 409, 775
BfuAI ACCTGC 1 cut(s) 754
BisI GCNGC 3 cut(s) 486, 691, 750
BlsI GCNGC 3 cut(s) 487, 692, 751
BmcAI AGTACT 1 cut(s) 907
Bme1390I CCNGG 6 cut(s) 85, 206, 816, 829, 913, 988
BmiI GGNNCC 4 cut(s) 291, 618, 698, 877
BmrFI CCNGG 6 cut(s) 85, 206, 816, 829, 913, 988
BmrI ACTGGG 1 cut(s) 490
BmsI GCATC 1 cut(s) 389
BmuI ACTGGG 1 cut(s) 490
BpmI CTGGAG 1 cut(s) 862
Bpu10I CCTNAGC 1 cut(s) 225
BsaI GGTCTC 1 cut(s) 195
BsaJI CCNNGG 4 cut(s) 13, 84, 502, 962
Bsc4I CCNNNNNNNGG 1 cut(s) 834
Bse118I RCCGGY 1 cut(s) 805
Bse1I ACTGG 3 cut(s) 485, 609, 839
Bse3DI GCAATG 1 cut(s) 685
BseBI CCWGG 6 cut(s) 85, 206, 816, 829, 913, 988
BseDI CCNNGG 4 cut(s) 13, 84, 502, 962
BseGI GGATG 3 cut(s) 404, 746, 824
BseLI CCNNNNNNNGG 1 cut(s) 834
BseMI GCAATG 1 cut(s) 685
BseMII CTCAG 4 cut(s) 216, 578, 768, 941
BseNI ACTGG 3 cut(s) 485, 609, 839
BseRI GAGGAG 5 cut(s) 33, 36, 39, 42, 45
BseXI GCAGC 2 cut(s) 497, 677
BseYI CCCAGC 1 cut(s) 838
BsgI GTGCAG 1 cut(s) 613
BshNI GGYRCC 2 cut(s) 289, 616
BsiSI CCGG 1 cut(s) 806
BslI CCNNNNNNNGG 1 cut(s) 834
BsmAI GTCTC 3 cut(s) 195, 575, 981
BsmBI CGTCTC 1 cut(s) 981
Bso31I GGTCTC 1 cut(s) 195
Bsp143I GATC 3 cut(s) 131, 605, 792
Bsp19I CCATGG 1 cut(s) 13
BspACI CCGC 2 cut(s) 574, 750
BspCNI CTCAG 4 cut(s) 217, 577, 767, 940
BspLI GGNNCC 4 cut(s) 291, 618, 698, 877
BspMI ACCTGC 1 cut(s) 754
BspPI GGATC 2 cut(s) 600, 800
BspT107I GGYRCC 2 cut(s) 289, 616
BspTNI GGTCTC 1 cut(s) 195
BsrDI GCAATG 1 cut(s) 685
BsrFI RCCGGY 1 cut(s) 805
BsrI ACTGG 3 cut(s) 485, 609, 839
BssAI RCCGGY 1 cut(s) 805
BssECI CCNNGG 4 cut(s) 13, 84, 502, 962
BssMI GATC 3 cut(s) 131, 605, 792
BssT1I CCWWGG 3 cut(s) 13, 502, 962
Bst2UI CCWGG 6 cut(s) 85, 206, 816, 829, 913, 988
Bst4CI ACNGT 4 cut(s) 258, 452, 517, 556
Bst6I CTCTTC 1 cut(s) 109
BstDEI CTNAG 5 cut(s) 225, 346, 564, 754, 927
BstDSI CCRYGG 1 cut(s) 13
BstF5I GGATG 3 cut(s) 404, 746, 824
BstKTI GATC 3 cut(s) 134, 608, 795
BstMAI GTCTC 3 cut(s) 195, 575, 981
BstMBI GATC 3 cut(s) 131, 605, 792
BstNI CCWGG 6 cut(s) 85, 206, 816, 829, 913, 988
BstSCI CCNGG 6 cut(s) 83, 204, 814, 827, 911, 986
BstSFI CTRYAG 2 cut(s) 409, 775
BstV1I GCAGC 2 cut(s) 497, 677
BstX2I RGATCY 1 cut(s) 605
BstYI RGATCY 1 cut(s) 605
BtgI CCRYGG 1 cut(s) 13
BtsCI GGATG 3 cut(s) 404, 746, 824
BtsIMutI CAGTG 2 cut(s) 461, 572
BveI ACCTGC 1 cut(s) 754
Cfr10I RCCGGY 1 cut(s) 805
Csp6I GTAC 5 cut(s) 290, 617, 784, 832, 906
CviAII CATG 1 cut(s) 14
CviQI GTAC 5 cut(s) 290, 617, 784, 832, 906
DdeI CTNAG 5 cut(s) 225, 346, 564, 754, 927
DpnI GATC 3 cut(s) 133, 607, 794
DpnII GATC 3 cut(s) 131, 605, 792
Eam1104I CTCTTC 1 cut(s) 109
EarI CTCTTC 1 cut(s) 109
Eco130I CCWWGG 3 cut(s) 13, 502, 962
Eco31I GGTCTC 1 cut(s) 195
EcoRII CCWGG 6 cut(s) 83, 204, 814, 827, 911, 986
EcoT14I CCWWGG 3 cut(s) 13, 502, 962
ErhI CCWWGG 3 cut(s) 13, 502, 962
Esp3I CGTCTC 1 cut(s) 981
FaeI CATG 1 cut(s) 17
FaiI YATR 9 cut(s) 15, 186, 316, 411, 495, 538, 547, 765, 982
FatI CATG 1 cut(s) 13
FblI GTMKAC 1 cut(s) 381
Fnu4HI GCNGC 3 cut(s) 486, 691, 750
FokI GGATG 3 cut(s) 411, 753, 831
Fsp4HI GCNGC 3 cut(s) 486, 691, 750
FspBI CTAG 5 cut(s) 60, 286, 442, 577, 903
GluI GCNGC 3 cut(s) 486, 691, 750
GsaI CCCAGC 1 cut(s) 842
GsuI CTGGAG 1 cut(s) 862
HapII CCGG 1 cut(s) 806
Hin1II CATG 1 cut(s) 17
HincII GTYRAC 1 cut(s) 683
HindII GTYRAC 1 cut(s) 683
HinfI GANTC 4 cut(s) 149, 243, 654, 885
HpaII CCGG 1 cut(s) 806
HphI GGTGA 2 cut(s) 123, 839
Hpy166II GTNNAC 3 cut(s) 382, 533, 683
Hpy188I TCNGA 4 cut(s) 142, 398, 653, 757
Hpy188III TCNNGA 6 cut(s) 153, 247, 662, 879, 889, 921
Hpy8I GTNNAC 3 cut(s) 382, 533, 683
Hpy99I CGWCG 1 cut(s) 308
HpyAV CCTTC 3 cut(s) 36, 42, 76
HpyCH4III ACNGT 4 cut(s) 258, 452, 517, 556
HpyCH4IV ACGT 1 cut(s) 306
HpyCH4V TGCA 3 cut(s) 594, 767, 858
HpyF3I CTNAG 5 cut(s) 225, 346, 564, 754, 927
HpySE526I ACGT 1 cut(s) 306
Hsp92II CATG 1 cut(s) 17
KpnI GGTACC 2 cut(s) 293, 620
Kzo9I GATC 3 cut(s) 131, 605, 792
LmnI GCTCC 2 cut(s) 506, 881
Lsp1109I GCAGC 2 cut(s) 497, 677
LweI GCATC 1 cut(s) 389
MaeI CTAG 5 cut(s) 60, 286, 442, 577, 903
MaeII ACGT 1 cut(s) 306
MaeIII GTNAC 5 cut(s) 165, 258, 272, 318, 845
MalI GATC 3 cut(s) 133, 607, 794
MboI GATC 3 cut(s) 131, 605, 792
MboII GAAGA 3 cut(s) 126, 615, 879
MfeI CAATTG 1 cut(s) 724
MflI RGATCY 1 cut(s) 605
MluCI AATT 7 cut(s) 143, 584, 640, 671, 717, 724, 862
MlyI GAGTC 3 cut(s) 158, 648, 894
MseI TTAA 3 cut(s) 583, 733, 943
MslI CAYNNNNRTG 1 cut(s) 12
MspI CCGG 1 cut(s) 806
MspR9I CCNGG 6 cut(s) 85, 206, 816, 829, 913, 988
MunI CAATTG 1 cut(s) 724
MvaI CCWGG 6 cut(s) 85, 206, 816, 829, 913, 988
NcoI CCATGG 1 cut(s) 13
NdeII GATC 3 cut(s) 131, 605, 792
NlaIII CATG 1 cut(s) 17
NlaIV GGNNCC 4 cut(s) 291, 618, 698, 877
NmuCI GTSAC 2 cut(s) 272, 845
PfeI GAWTC 1 cut(s) 243
PfoI TCCNGGA 1 cut(s) 911
PkrI GCNGC 3 cut(s) 487, 692, 751
PleI GAGTC 3 cut(s) 157, 648, 893
PpsI GAGTC 3 cut(s) 157, 648, 893
PshBI ATTAAT 1 cut(s) 583
Psp6I CCWGG 6 cut(s) 83, 204, 814, 827, 911, 986
PspFI CCCAGC 1 cut(s) 838
PspGI CCWGG 6 cut(s) 83, 204, 814, 827, 911, 986
PspN4I GGNNCC 4 cut(s) 291, 618, 698, 877
PsuI RGATCY 1 cut(s) 605
RsaI GTAC 5 cut(s) 291, 618, 785, 833, 907
RsaNI GTAC 5 cut(s) 290, 617, 784, 832, 906
RseI CAYNNNNRTG 1 cut(s) 12
SaqAI TTAA 3 cut(s) 583, 733, 943
SatI GCNGC 3 cut(s) 486, 691, 750
Sau3AI GATC 3 cut(s) 131, 605, 792
ScaI AGTACT 1 cut(s) 907
SchI GAGTC 3 cut(s) 158, 648, 894
ScrFI CCNGG 6 cut(s) 85, 206, 816, 829, 913, 988
SfaNI GCATC 1 cut(s) 389
SfcI CTRYAG 2 cut(s) 409, 775
SmiMI CAYNNNNRTG 1 cut(s) 12
SpeI ACTAGT 1 cut(s) 441
Sse9I AATT 7 cut(s) 143, 584, 640, 671, 717, 724, 862
SsiI CCGC 2 cut(s) 574, 750
SspI AATATT 1 cut(s) 947
SspMI CTAG 5 cut(s) 60, 286, 442, 577, 903
StyD4I CCNGG 6 cut(s) 83, 204, 814, 827, 911, 986
StyI CCWWGG 3 cut(s) 13, 502, 962
TaaI ACNGT 4 cut(s) 258, 452, 517, 556
TaiI ACGT 1 cut(s) 309
TaqI TCGA 2 cut(s) 498, 512
TasI AATT 7 cut(s) 143, 584, 640, 671, 717, 724, 862
TatI WGTACW 1 cut(s) 905
TauI GCSGC 1 cut(s) 752
TfiI GAWTC 1 cut(s) 243
Tru1I TTAA 3 cut(s) 583, 733, 943
Tru9I TTAA 3 cut(s) 583, 733, 943
TscAI CASTG 2 cut(s) 461, 572
TseFI GTSAC 2 cut(s) 272, 845
TseI GCWGC 2 cut(s) 485, 690
Tsp45I GTSAC 2 cut(s) 272, 845
TspDTI ATGAA 4 cut(s) 172, 282, 562, 997
TspRI CASTG 2 cut(s) 461, 572
VspI ATTAAT 1 cut(s) 583
XapI RAATTY 1 cut(s) 640
XmiI GTMKAC 1 cut(s) 381
XspI CTAG 5 cut(s) 60, 286, 442, 577, 903
ZrmI AGTACT 1 cut(s) 907
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.