Rmu_ssc0000456.1_g000022

Nitroreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000456.1
OG0025467
Physical Location & Seq
Forward (+)
120277 .. 120765
489 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 489 bp
atgtccttctcttcctcctctccttccccttcttcactctccacccccaaacaacccgacccgcaactcgaccaaaacccctcccaggtcctcacgtaccacaacgacaccaagcaccacttccctcgctacgccagaggccctcgcagactcgactgggccaaccagcccaacccattctgccgctacctctcccccccctctcctccaccccacaccacccaactatcacccctcccctctctactccctcttcacctctcttcctcctccaaaacccatctccaaatccaccatttcccaactccttacgactctctagctctctccgcctggaaaaccaccggcttctccacctggtctctcagagtcaatcccagcagcggtaatctacaccccatcaaggcttatataatctccctgctgatcccttccctcactgatttcggcttcctggcccatccattaaagtcgagcgctttgcgctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nitroreductase

Protein Analysis

162

Amino Acids

18.02

Weight (kDa)

9.93

Isoelectric Point (pI)

63.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025467)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001089.1_g000019 Rmu_sc0002131.1_g000002 Rmu_ssc0000456.1_g000022

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 62, 184, 330, 384
AclWI GGATC 1 cut(s) 421
AfaI GTAC 1 cut(s) 98
AfeI AGCGCT 1 cut(s) 478
AfiI CCNNNNNNNGG 3 cut(s) 85, 383, 403
AjnI CCWGG 4 cut(s) 84, 332, 356, 453
AjuI GAANNNNNNNTTGG 2 cut(s) 104, 136
AluBI AGCT 1 cut(s) 323
AluI AGCT 1 cut(s) 323
Alw26I GTCTC 1 cut(s) 366
AlwI GGATC 1 cut(s) 421
Aor51HI AGCGCT 1 cut(s) 478
AoxI GGCC 3 cut(s) 139, 159, 456
ApeKI GCWGC 1 cut(s) 381
AspLEI GCGC 2 cut(s) 479, 486
AspS9I GGNCC 4 cut(s) 88, 140, 159, 457
AsuHPI GGTGA 2 cut(s) 222, 248
AvaII GGWCC 1 cut(s) 88
BbvI GCAGC 1 cut(s) 393
BccI CCATC 3 cut(s) 288, 407, 468
BcgI CGANNNNNNTGC 1 cut(s) 463
BciT130I CCWGG 4 cut(s) 86, 334, 358, 455
BcoDI GTCTC 1 cut(s) 366
BfaI CTAG 2 cut(s) 320, 487
BfoI RGCGCY 1 cut(s) 480
BisI GCNGC 2 cut(s) 184, 382
BlsI GCNGC 2 cut(s) 185, 383
Bme1390I CCNGG 4 cut(s) 86, 334, 358, 455
Bme18I GGWCC 1 cut(s) 88
BmgT120I GGNCC 4 cut(s) 88, 140, 159, 457
BmrFI CCNGG 4 cut(s) 86, 334, 358, 455
BmrI ACTGGG 1 cut(s) 166
BmuI ACTGGG 1 cut(s) 166
BsaAI YACGTR 1 cut(s) 96
BsaI GGTCTC 1 cut(s) 366
BsaJI CCNNGG 1 cut(s) 84
Bsc4I CCNNNNNNNGG 3 cut(s) 85, 383, 403
Bse118I RCCGGY 1 cut(s) 344
Bse1I ACTGG 1 cut(s) 161
BseBI CCWGG 4 cut(s) 86, 334, 358, 455
BseDI CCNNGG 1 cut(s) 84
BseGI GGATG 1 cut(s) 460
BseLI CCNNNNNNNGG 3 cut(s) 85, 383, 403
BseMII CTCAG 1 cut(s) 379
BseNI ACTGG 1 cut(s) 161
BseRI GAGGAG 3 cut(s) 7, 195, 259
BseXI GCAGC 1 cut(s) 393
BseYI CCCAGC 1 cut(s) 377
BshFI GGCC 3 cut(s) 141, 161, 458
BsiSI CCGG 1 cut(s) 345
BslI CCNNNNNNNGG 3 cut(s) 85, 383, 403
BsmAI GTCTC 1 cut(s) 366
BsnI GGCC 3 cut(s) 141, 161, 458
Bso31I GGTCTC 1 cut(s) 366
Bsp143I GATC 1 cut(s) 426
BspACI CCGC 4 cut(s) 62, 184, 330, 384
BspANI GGCC 3 cut(s) 141, 161, 458
BspCNI CTCAG 1 cut(s) 378
BspPI GGATC 1 cut(s) 421
BspTNI GGTCTC 1 cut(s) 366
BsrFI RCCGGY 1 cut(s) 344
BsrI ACTGG 1 cut(s) 161
BssAI RCCGGY 1 cut(s) 344
BssECI CCNNGG 1 cut(s) 84
BssMI GATC 1 cut(s) 426
Bst2UI CCWGG 4 cut(s) 86, 334, 358, 455
Bst6I CTCTTC 3 cut(s) 16, 258, 268
BstBAI YACGTR 1 cut(s) 96
BstDEI CTNAG 1 cut(s) 365
BstF5I GGATG 1 cut(s) 460
BstH2I RGCGCY 1 cut(s) 480
BstHHI GCGC 2 cut(s) 479, 486
BstKTI GATC 1 cut(s) 429
BstMAI GTCTC 1 cut(s) 366
BstMBI GATC 1 cut(s) 426
BstMWI GCNNNNNNNGC 2 cut(s) 329, 483
BstNI CCWGG 4 cut(s) 86, 334, 358, 455
BstSCI CCNGG 4 cut(s) 84, 332, 356, 453
BstV1I GCAGC 1 cut(s) 393
BsuRI GGCC 3 cut(s) 141, 161, 458
BtsCI GGATG 1 cut(s) 460
BtsIMutI CAGTG 1 cut(s) 438
CfoI GCGC 2 cut(s) 479, 486
Cfr10I RCCGGY 1 cut(s) 344
Cfr13I GGNCC 4 cut(s) 88, 140, 159, 457
CsiI ACCWGGT 1 cut(s) 356
Csp6I GTAC 1 cut(s) 97
CviJI RGCY 8 cut(s) 141, 161, 169, 323, 348, 407, 450, 458
CviKI_1 RGCY 8 cut(s) 141, 161, 169, 323, 348, 407, 450, 458
CviQI GTAC 1 cut(s) 97
DdeI CTNAG 1 cut(s) 365
DpnI GATC 1 cut(s) 428
DpnII GATC 1 cut(s) 426
Eam1104I CTCTTC 3 cut(s) 16, 258, 268
EarI CTCTTC 3 cut(s) 16, 258, 268
EciI GGCGGA 1 cut(s) 319
Eco31I GGTCTC 1 cut(s) 366
Eco47I GGWCC 1 cut(s) 88
Eco47III AGCGCT 1 cut(s) 478
EcoO109I RGGNCCY 2 cut(s) 88, 140
EcoRII CCWGG 4 cut(s) 84, 332, 356, 453
FaiI YATR 2 cut(s) 411, 413
FalI AAGNNNNNCTT 2 cut(s) 104, 136
FauI CCCGC 1 cut(s) 69
Fnu4HI GCNGC 2 cut(s) 184, 382
FokI GGATG 1 cut(s) 447
Fsp4HI GCNGC 2 cut(s) 184, 382
FspBI CTAG 2 cut(s) 320, 487
GlaI GCGC 2 cut(s) 478, 485
GluI GCNGC 2 cut(s) 184, 382
GsaI CCCAGC 1 cut(s) 381
HaeII RGCGCY 1 cut(s) 480
HaeIII GGCC 3 cut(s) 141, 161, 458
HapII CCGG 1 cut(s) 345
HhaI GCGC 2 cut(s) 479, 486
Hin6I GCGC 2 cut(s) 477, 484
HinP1I GCGC 2 cut(s) 477, 484
HinfI GANTC 3 cut(s) 150, 314, 369
HpaII CCGG 1 cut(s) 345
HphI GGTGA 2 cut(s) 222, 248
Hpy188I TCNGA 1 cut(s) 368
HpyAV CCTTC 4 cut(s) 16, 33, 39, 441
HpyCH4IV ACGT 1 cut(s) 95
HpyF10VI GCNNNNNNNGC 2 cut(s) 329, 483
HpyF3I CTNAG 1 cut(s) 365
HpySE526I ACGT 1 cut(s) 95
HspAI GCGC 2 cut(s) 477, 484
Kzo9I GATC 1 cut(s) 426
Lsp1109I GCAGC 1 cut(s) 393
MabI ACCWGGT 1 cut(s) 356
MaeI CTAG 2 cut(s) 320, 487
MaeII ACGT 1 cut(s) 95
MalI GATC 1 cut(s) 428
MboI GATC 1 cut(s) 426
MboII GAAGA 4 cut(s) 3, 24, 245, 255
MlyI GAGTC 3 cut(s) 144, 308, 378
MseI TTAA 1 cut(s) 467
MspA1I CMGCKG 1 cut(s) 384
MspI CCGG 1 cut(s) 345
MspR9I CCNGG 4 cut(s) 86, 334, 358, 455
MvaI CCWGG 4 cut(s) 86, 334, 358, 455
MwoI GCNNNNNNNGC 2 cut(s) 329, 483
NdeII GATC 1 cut(s) 426
PkrI GCNGC 2 cut(s) 185, 383
PleI GAGTC 3 cut(s) 144, 308, 377
PpsI GAGTC 3 cut(s) 144, 308, 377
Ppu21I YACGTR 1 cut(s) 96
PpuMI RGGWCCY 1 cut(s) 88
Psp5II RGGWCCY 1 cut(s) 88
Psp6I CCWGG 4 cut(s) 84, 332, 356, 453
PspFI CCCAGC 1 cut(s) 377
PspGI CCWGG 4 cut(s) 84, 332, 356, 453
PspPI GGNCC 4 cut(s) 88, 140, 159, 457
PspPPI RGGWCCY 1 cut(s) 88
RsaI GTAC 1 cut(s) 98
RsaNI GTAC 1 cut(s) 97
SaqAI TTAA 1 cut(s) 467
SatI GCNGC 2 cut(s) 184, 382
Sau3AI GATC 1 cut(s) 426
Sau96I GGNCC 4 cut(s) 88, 140, 159, 457
SchI GAGTC 3 cut(s) 144, 308, 378
ScrFI CCNGG 4 cut(s) 86, 334, 358, 455
SetI ASST 6 cut(s) 90, 98, 192, 261, 325, 359
SexAI ACCWGGT 1 cut(s) 356
SinI GGWCC 1 cut(s) 88
SsiI CCGC 4 cut(s) 62, 184, 330, 384
SspMI CTAG 2 cut(s) 320, 487
StyD4I CCNGG 4 cut(s) 84, 332, 356, 453
TaiI ACGT 1 cut(s) 98
TaqI TCGA 3 cut(s) 69, 153, 473
TauI GCSGC 1 cut(s) 186
Tru1I TTAA 1 cut(s) 467
Tru9I TTAA 1 cut(s) 467
TscAI CASTG 1 cut(s) 445
TseI GCWGC 1 cut(s) 381
TspRI CASTG 1 cut(s) 445
VpaK11BI GGWCC 1 cut(s) 88
XspI CTAG 2 cut(s) 320, 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.