Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000484.1

Orthogroup ID

OG0031026

Physical Location & Seq

Genomic Coordinates Reverse (-)

84296 .. 87874

Gene Structure 3579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000484.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

atgagacccgggtcagacatggtaaaggagaaccacgagagcctctctcagcctctcacgtcgcccaagaaagcagctaaggcatcaaggaaacagtcgaaagcggcaaaggagacaacgacgagtttcgagaaggacttgcaggaaatagaggagaagcttcgaaggtcgcccctctcccttcgccggcttcattctccactgtccgtccaccataagacatcaaacaaagtgggttttcttcgcctcgatctcttctacgagtctgtggaagaaattccccaagattcgagctgtggaaggagaatcatcgacgagaagaaaccgagcggagctgaaatcgctttgatcggagtcggcgattccggccaccatagccggtatttcttgagggttatgaaagttgtaattggagttgagatgaagaacttttgtttggaagttttgtcaaattctgactttgggccgccgctggtgccgccactgtggtggtattttccagcgaacaacgagtcaacgacgccgccaaacaagaagtctgccctccatccccttgccgtcgccgtcctttctacctggtatgagacttctaggttgccgccaccgctacacgaaaccctaagagggtttcgccgatctttcgccactcaagatcactccgaaaagctaggaggtctcgagttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMG_box

Protein Analysis

228

Amino Acids

25.7

Weight (kDa)

9.3

Isoelectric Point (pI)

69.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031026)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_ssc0000484.1_g000020
rosa_roxburghii	Rroxscaffold_4G00287600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	475
AccBSI	CCGCTC	1 cut(s)	330
AciI	CCGC	8 cut(s)	104, 330, 467, 470, 479, 524, 599, 605
AcoI	YGGCCR	1 cut(s)	367
AcsI	RAATTY	2 cut(s)	276, 451
AcyI	GRCGYC	1 cut(s)	521
AfiI	CCNNNNNNNGG	2 cut(s)	186, 624
AjiI	CACGTC	1 cut(s)	60
AjnI	CCWGG	1 cut(s)	575
AjuI	GAANNNNNNNTTGG	2 cut(s)	419, 451
AleI	CACNNNNGTG	1 cut(s)	487
AluBI	AGCT	5 cut(s)	77, 160, 294, 335, 667
AluI	AGCT	5 cut(s)	77, 160, 294, 335, 667
Alw26I	GTCTC	3 cut(s)	107, 578, 680
Ama87I	CYCGRG	2 cut(s)	8, 677
AoxI	GGCC	2 cut(s)	367, 464
ApeKI	GCWGC	1 cut(s)	74
ApoI	RAATTY	2 cut(s)	276, 451
ArsI	GACNNNNNNTTYG	4 cut(s)	497, 521, 529, 553
Asp700I	GAANNNNTTC	1 cut(s)	276
AspS9I	GGNCC	1 cut(s)	464
AsuC2I	CCSGG	2 cut(s)	9, 10
AsuII	TTCGAA	1 cut(s)	163
AvaI	CYCGRG	2 cut(s)	8, 677
BanI	GGYRCC	1 cut(s)	475
BauI	CACGAG	1 cut(s)	35
BbvI	GCAGC	1 cut(s)	86
BccI	CCATC	1 cut(s)	555
BceAI	ACGGC	2 cut(s)	542, 548
BciT130I	CCWGG	1 cut(s)	577
BcnI	CCSGG	2 cut(s)	9, 10
BcoDI	GTCTC	3 cut(s)	107, 578, 680
BfaI	CTAG	3 cut(s)	591, 668, 685
BisI	GCNGC	7 cut(s)	75, 105, 467, 470, 479, 524, 599
BlsI	GCNGC	7 cut(s)	76, 106, 468, 471, 480, 525, 600
Bme1390I	CCNGG	3 cut(s)	9, 10, 577
BmeT110I	CYCGRG	2 cut(s)	8, 677
BmgBI	CACGTC	1 cut(s)	60
BmgT120I	GGNCC	1 cut(s)	464
BmiI	GGNNCC	1 cut(s)	477
BmrFI	CCNGG	3 cut(s)	9, 10, 577
BmsI	GCATC	1 cut(s)	92
BoxI	GACNNNNGTC	1 cut(s)	10
BplI	GAGNNNNNCTC	4 cut(s)	29, 61, 31, 63
Bpu10I	CCTNAGC	1 cut(s)	78
Bpu14I	TTCGAA	1 cut(s)	163
BpuEI	CTTGAG	2 cut(s)	409, 633
BpuMI	CCSGG	2 cut(s)	9, 10
BsaHI	GRCGYC	1 cut(s)	521
BsaI	GGTCTC	1 cut(s)	680
BsaJI	CCNNGG	1 cut(s)	8
Bsc4I	CCNNNNNNNGG	2 cut(s)	186, 624
Bse118I	RCCGGY	2 cut(s)	186, 378
BseBI	CCWGG	1 cut(s)	577
BseDI	CCNNGG	1 cut(s)	8
BseGI	GGATG	1 cut(s)	547
BseLI	CCNNNNNNNGG	2 cut(s)	186, 624
BseMII	CTCAG	1 cut(s)	62
BseRI	GAGGAG	1 cut(s)	167
BseXI	GCAGC	1 cut(s)	86
BshFI	GGCC	2 cut(s)	369, 466
BshNI	GGYRCC	1 cut(s)	475
BsiHKCI	CYCGRG	2 cut(s)	8, 677
BsiSI	CCGG	4 cut(s)	9, 187, 366, 379
BslI	CCNNNNNNNGG	2 cut(s)	186, 624
BsmAI	GTCTC	3 cut(s)	107, 578, 680
BsnI	GGCC	2 cut(s)	369, 466
Bso31I	GGTCTC	1 cut(s)	680
BsoBI	CYCGRG	2 cut(s)	8, 677
Bsp119I	TTCGAA	1 cut(s)	163
Bsp143I	GATC	4 cut(s)	250, 348, 635, 652
BspACI	CCGC	8 cut(s)	104, 330, 467, 470, 479, 524, 599, 605
BspANI	GGCC	2 cut(s)	369, 466
BspCNI	CTCAG	1 cut(s)	61
BspLI	GGNNCC	1 cut(s)	477
BspT104I	TTCGAA	1 cut(s)	163
BspT107I	GGYRCC	1 cut(s)	475
BspTNI	GGTCTC	1 cut(s)	680
BsrBI	CCGCTC	1 cut(s)	330
BsrFI	RCCGGY	2 cut(s)	186, 378
BssAI	RCCGGY	2 cut(s)	186, 378
BssECI	CCNNGG	1 cut(s)	8
BssMI	GATC	4 cut(s)	250, 348, 635, 652
BssNI	GRCGYC	1 cut(s)	521
BssSI	CACGAG	1 cut(s)	35
Bst2BI	CACGAG	1 cut(s)	35
Bst2UI	CCWGG	1 cut(s)	577
Bst4CI	ACNGT	3 cut(s)	96, 204, 486
Bst6I	CTCTTC	1 cut(s)	260
BstACI	GRCGYC	1 cut(s)	521
BstBI	TTCGAA	1 cut(s)	163
BstC8I	GCNNGC	1 cut(s)	188
BstDEI	CTNAG	3 cut(s)	48, 78, 620
BstF5I	GGATG	1 cut(s)	547
BstKTI	GATC	4 cut(s)	253, 351, 638, 655
BstMAI	GTCTC	3 cut(s)	107, 578, 680
BstMBI	GATC	4 cut(s)	250, 348, 635, 652
BstMWI	GCNNNNNNNGC	7 cut(s)	80, 341, 366, 375, 475, 478, 604
BstNI	CCWGG	1 cut(s)	577
BstPAI	GACNNNNGTC	1 cut(s)	10
BstSCI	CCNGG	3 cut(s)	7, 8, 575
BstV1I	GCAGC	1 cut(s)	86
BstXI	CCANNNNNNTGG	1 cut(s)	489
BsuRI	GGCC	2 cut(s)	369, 466
BtrI	CACGTC	1 cut(s)	60
BtsCI	GGATG	1 cut(s)	547
BtsIMutI	CAGTG	2 cut(s)	200, 482
Cac8I	GCNNGC	1 cut(s)	188
Cfr10I	RCCGGY	2 cut(s)	186, 378
Cfr13I	GGNCC	1 cut(s)	464
Cfr9I	CCCGGG	1 cut(s)	8
CseI	GACGC	1 cut(s)	529
CsiI	ACCWGGT	1 cut(s)	575
CspCI	CAANNNNNGTGG	2 cut(s)	213, 248
CviAII	CATG	1 cut(s)	19
DdeI	CTNAG	3 cut(s)	48, 78, 620
DpnI	GATC	4 cut(s)	252, 350, 637, 654
DpnII	GATC	4 cut(s)	250, 348, 635, 652
EaeI	YGGCCR	1 cut(s)	367
Eam1104I	CTCTTC	1 cut(s)	260
EarI	CTCTTC	1 cut(s)	260
Eco31I	GGTCTC	1 cut(s)	680
Eco88I	CYCGRG	2 cut(s)	8, 677
EcoRII	CCWGG	1 cut(s)	575
FaeI	CATG	1 cut(s)	22
FaiI	YATR	5 cut(s)	20, 216, 375, 398, 582
FatI	CATG	1 cut(s)	18
Fnu4HI	GCNGC	7 cut(s)	75, 105, 467, 470, 479, 524, 599
FokI	GGATG	1 cut(s)	534
Fsp4HI	GCNGC	7 cut(s)	75, 105, 467, 470, 479, 524, 599
FspBI	CTAG	3 cut(s)	591, 668, 685
GluI	GCNGC	7 cut(s)	75, 105, 467, 470, 479, 524, 599
HaeIII	GGCC	2 cut(s)	369, 466
HapII	CCGG	4 cut(s)	9, 187, 366, 379
HgaI	GACGC	1 cut(s)	529
Hin1I	GRCGYC	1 cut(s)	521
Hin1II	CATG	1 cut(s)	22
HincII	GTYRAC	1 cut(s)	516
HindII	GTYRAC	1 cut(s)	516
HindIII	AAGCTT	1 cut(s)	158
HinfI	GANTC	6 cut(s)	263, 287, 306, 354, 362, 512
HpaII	CCGG	4 cut(s)	9, 187, 366, 379
Hpy166II	GTNNAC	2 cut(s)	211, 516
Hpy188I	TCNGA	4 cut(s)	16, 353, 457, 661
Hpy188III	TCNNGA	4 cut(s)	130, 388, 650, 677
Hpy8I	GTNNAC	2 cut(s)	211, 516
Hpy99I	CGWCG	5 cut(s)	64, 124, 317, 523, 563
HpyAV	CCTTC	4 cut(s)	127, 159, 191, 294
HpyCH4III	ACNGT	3 cut(s)	96, 204, 486
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	1 cut(s)	142
HpyF10VI	GCNNNNNNNGC	7 cut(s)	80, 341, 366, 375, 475, 478, 604
HpyF3I	CTNAG	3 cut(s)	48, 78, 620
HpySE526I	ACGT	1 cut(s)	59
Hsp92I	GRCGYC	1 cut(s)	521
Hsp92II	CATG	1 cut(s)	22
KroI	GCCGGC	1 cut(s)	186
KroNI	GCCGGC	1 cut(s)	188
Kzo9I	GATC	4 cut(s)	250, 348, 635, 652
LmnI	GCTCC	1 cut(s)	332
LpnPI	CCDG	9 cut(s)	22, 128, 200, 379, 392, 458, 513, 562, 589
Lsp1109I	GCAGC	1 cut(s)	86
LweI	GCATC	1 cut(s)	92
MabI	ACCWGGT	1 cut(s)	575
MaeI	CTAG	3 cut(s)	591, 668, 685
MaeII	ACGT	1 cut(s)	59
MalI	GATC	4 cut(s)	252, 350, 637, 654
MbiI	CCGCTC	1 cut(s)	330
MboI	GATC	4 cut(s)	250, 348, 635, 652
MboII	GAAGA	5 cut(s)	233, 247, 284, 331, 436
MluCI	AATT	3 cut(s)	276, 408, 451
MlyI	GAGTC	3 cut(s)	272, 363, 521
MnlI	CCTC	9 cut(s)	53, 63, 145, 185, 257, 384, 554, 617, 665
MroNI	GCCGGC	1 cut(s)	186
MroXI	GAANNNNTTC	1 cut(s)	276
MslI	CAYNNNNRTG	1 cut(s)	487
MspA1I	CMGCKG	1 cut(s)	472
MspI	CCGG	4 cut(s)	9, 187, 366, 379
MspR9I	CCNGG	3 cut(s)	9, 10, 577
MvaI	CCWGG	1 cut(s)	577
MwoI	GCNNNNNNNGC	7 cut(s)	80, 341, 366, 375, 475, 478, 604
NaeI	GCCGGC	1 cut(s)	188
NciI	CCSGG	2 cut(s)	9, 10
NdeII	GATC	4 cut(s)	250, 348, 635, 652
NgoMIV	GCCGGC	1 cut(s)	186
NlaIII	CATG	1 cut(s)	22
NlaIV	GGNNCC	1 cut(s)	477
NspV	TTCGAA	1 cut(s)	163
OliI	CACNNNNGTG	1 cut(s)	487
PaeR7I	CTCGAG	1 cut(s)	677
PcsI	WCGNNNNNNNCGW	1 cut(s)	357
PdiI	GCCGGC	1 cut(s)	188
PdmI	GAANNNNTTC	1 cut(s)	276
PfeI	GAWTC	3 cut(s)	287, 306, 362
PkrI	GCNGC	7 cut(s)	76, 106, 468, 471, 480, 525, 600
PleI	GAGTC	3 cut(s)	271, 362, 520
PpsI	GAGTC	3 cut(s)	271, 362, 520
PshAI	GACNNNNGTC	1 cut(s)	10
Psp6I	CCWGG	1 cut(s)	575
PspGI	CCWGG	1 cut(s)	575
PspN4I	GGNNCC	1 cut(s)	477
PspPI	GGNCC	1 cut(s)	464
RseI	CAYNNNNRTG	1 cut(s)	487
SatI	GCNGC	7 cut(s)	75, 105, 467, 470, 479, 524, 599
Sau3AI	GATC	4 cut(s)	250, 348, 635, 652
Sau96I	GGNCC	1 cut(s)	464
SchI	GAGTC	3 cut(s)	272, 363, 521
ScrFI	CCNGG	3 cut(s)	9, 10, 577
SexAI	ACCWGGT	1 cut(s)	575
SfaNI	GCATC	1 cut(s)	92
Sfr274I	CTCGAG	1 cut(s)	677
SfuI	TTCGAA	1 cut(s)	163
SlaI	CTCGAG	1 cut(s)	677
SmaI	CCCGGG	1 cut(s)	10
SmiMI	CAYNNNNRTG	1 cut(s)	487
SmlI	CTYRAG	3 cut(s)	388, 648, 677
SmoI	CTYRAG	3 cut(s)	388, 648, 677
Sse9I	AATT	3 cut(s)	276, 408, 451
SsiI	CCGC	8 cut(s)	104, 330, 467, 470, 479, 524, 599, 605
SspMI	CTAG	3 cut(s)	591, 668, 685
StyD4I	CCNGG	3 cut(s)	7, 8, 575
TaaI	ACNGT	3 cut(s)	96, 204, 486
TaiI	ACGT	1 cut(s)	62
TaqI	TCGA	7 cut(s)	98, 129, 163, 249, 290, 312, 678
TasI	AATT	3 cut(s)	276, 408, 451
TauI	GCSGC	6 cut(s)	107, 469, 472, 481, 526, 601
TfiI	GAWTC	3 cut(s)	287, 306, 362
TscAI	CASTG	2 cut(s)	207, 489
TseI	GCWGC	1 cut(s)	74
TspDTI	ATGAA	3 cut(s)	182, 413, 437
TspGWI	ACGGA	1 cut(s)	196
TspMI	CCCGGG	1 cut(s)	8
TspRI	CASTG	2 cut(s)	207, 489
XapI	RAATTY	2 cut(s)	276, 451
XhoI	CTCGAG	1 cut(s)	677
XmaI	CCCGGG	1 cut(s)	8
XmnI	GAANNNNTTC	1 cut(s)	276
XspI	CTAG	3 cut(s)	591, 668, 685

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.